AT1G33811

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016047
Physical Location & Seq
Forward (+)
12267808 .. 12269913
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33811.1

Sequence Viewer

Length: 1113 bp
ATGGGCATTCTCCGTTTTGTATTGTTGATTAGTTTGAATCTGGTTTTGTTTGGTTTTAAAACGACCGTGTCACAGCCACAACAACAGGCACAAGTCCCATGTTTATTCATCTTCGGTGACTCTTTAGTCGACAATGGAAACAACAATAGGTTGCTTTCTCTTGCGAGGGCTAATTACCGACCTTATGGCATTGACTTTCCCCAAGGTACAACGGGACGGTTCACCAACGGTCGCACCTACGTTGATGCACTAGCTCAAATTCTTGGATTTAGGAACTATATTCCACCATATTCCAGGATTCGTGGCCAGGCTATACTTAGAGGTGCGAATTTCGCATCTGGTGCAGCTGGCATTAGAGATGAGACCGGTGACAACTTGGGTGCACATACTTCTATGAACCAGCAGGTAGAGCTATACACGACCGCGGTTCAACAGATGCTTCGATACTTCAGAGGAGACACAAATGAGCTCCAGAGATACTTAAGCCGTTGTATCTTTTACTCGGGAATGGGAAGTAACGATTATCTCAACAATTACTTCATGCCTGACTTTTACTCAACCAGTACCAATTACAATGACAAAACCTTTGCTGAGTCTCTGATAAAGAACTACACACAACAGCTCACGCGATTGTACCAATTTGGAGCTCGGAAAGTGATTGTGACTGGAGTGGGACAGATCGGTTGCATACCTTACCAGCTCGCCCGCTACAATAATCGTAACAATAGTACTGGCAGATGCAACGAAAAGATTAACAACGCAATTGTGGTGTTTAACACTCAAGTCAAGAAACTAGTGGACCGTTTAAACAAAGGTCAGTTGAAGGGAGCAAAGTTTGTTTACCTTGATTCCTACAAGAGTACCTATGATCTCGCCGTCAATGGAGCCGCTTACGGATTTGAGGTTGTGGACAAAGGTTGTTGTGGGGTGGGGAGGAACAATGGTCAGATAACATGTTTGCCGCTGCAGACCCCGTGCCCTGACCGAACCAAGTATCTCTTTTGGGACGCGTTTCATCCGACGGAGACTGCTAACATACTGCTGGCGAAATCTAATTTTTACTCCCGAGCTTACACTTACCCAATCAACATCCAAGAACTAGCCAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

370

Amino Acids

41.7

Weight (kDa)

9.37

Isoelectric Point (pI)

17.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 35 - 350 4.8e-40 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33811
fragaria_vesca FvH4_5g32900
malus_domestica MD08G1215700.v1.1
prunus_persica Prupe.1G547400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0230871
rosa_laevigata RLG00000001456
rosa_multiflora Rmu_sc0000551.1_g000017 Rmu_sc0010407.1_g000024
rosa_roxburghii Rroxscaffold_3G00229730
rosa_rugosa Rorug07G0262700
rosa_samantha Rh7BG392000 Rh7CG434900 Rh7DG410400
rosa_wichuraiana Rw7G034290 Rw7G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 394
AccI GTMKAC 1 cut(s) 129
AccII CGCG 3 cut(s) 425, 628, 1010
AciI CCGC 5 cut(s) 423, 425, 706, 888, 962
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 2 cut(s) 258, 328
AcuI CTGAAG 1 cut(s) 433
AfaI GTAC 5 cut(s) 208, 565, 635, 730, 862
AflII CTTAAG 1 cut(s) 481
AflIII ACRYGT 2 cut(s) 953, 1008
AgeI ACCGGT 1 cut(s) 365
AgsI TTSAA 3 cut(s) 37, 431, 823
AhlI ACTAGT 1 cut(s) 793
AjnI CCWGG 2 cut(s) 293, 306
AluBI AGCT 8 cut(s) 254, 347, 412, 469, 622, 647, 700, 1070
AluI AGCT 8 cut(s) 254, 347, 412, 469, 622, 647, 700, 1070
Alw21I GWGCWC 3 cut(s) 385, 471, 649
Alw26I GTCTC 4 cut(s) 356, 450, 600, 1019
Alw44I GTGCAC 1 cut(s) 381
Ama87I CYCGRG 2 cut(s) 502, 1065
AoxI GGCC 1 cut(s) 304
ApaLI GTGCAC 1 cut(s) 381
ApeKI GCWGC 2 cut(s) 344, 964
ApoI RAATTY 2 cut(s) 258, 328
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AsiGI ACCGGT 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 799
AsuHPI GGTGA 3 cut(s) 128, 214, 380
AvaI CYCGRG 2 cut(s) 502, 1065
AvaII GGWCC 1 cut(s) 799
BaeGI GKGCMC 2 cut(s) 385, 980
BaeI ACNNNNGTAYC 2 cut(s) 844, 877
BalI TGGCCA 1 cut(s) 306
BanII GRGCYC 2 cut(s) 471, 649
Bbv12I GWGCWC 3 cut(s) 385, 471, 649
BbvI GCAGC 2 cut(s) 356, 951
BceAI ACGGC 2 cut(s) 471, 860
BciT130I CCWGG 2 cut(s) 295, 308
BcoDI GTCTC 4 cut(s) 356, 450, 600, 1019
BcuI ACTAGT 1 cut(s) 793
BfaI CTAG 3 cut(s) 251, 794, 1100
BfmI CTRYAG 1 cut(s) 965
BfrI CTTAAG 1 cut(s) 481
BfuAI ACCTGC 1 cut(s) 394
BisI GCNGC 4 cut(s) 345, 888, 962, 965
BlsI GCNGC 4 cut(s) 346, 889, 963, 966
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 2 cut(s) 295, 308
Bme18I GGWCC 1 cut(s) 799
BmeT110I CYCGRG 2 cut(s) 502, 1065
BmgT120I GGNCC 1 cut(s) 799
BmiI GGNNCC 1 cut(s) 886
BmrFI CCNGG 2 cut(s) 295, 308
BmsI GCATC 4 cut(s) 235, 344, 426, 728
BpmI CTGGAG 2 cut(s) 455, 687
BpuEI CTTGAG 1 cut(s) 765
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 202, 423
BsaWI WCCGGW 1 cut(s) 365
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 3 cut(s) 561, 670, 736
BseBI CCWGG 2 cut(s) 295, 308
BseDI CCNNGG 2 cut(s) 202, 423
BseGI GGATG 2 cut(s) 1015, 1089
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 3 cut(s) 561, 670, 736
BseRI GAGGAG 1 cut(s) 468
BseSI GKGCMC 2 cut(s) 385, 980
BseXI GCAGC 2 cut(s) 356, 951
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 3 cut(s) 425, 628, 1010
Bsh1285I CGRYCG 3 cut(s) 66, 232, 423
BshFI GGCC 1 cut(s) 306
BshTI ACCGGT 1 cut(s) 365
BsiEI CGRYCG 3 cut(s) 66, 232, 423
BsiHKAI GWGCWC 3 cut(s) 385, 471, 649
BsiHKCI CYCGRG 2 cut(s) 502, 1065
BsiSI CCGG 1 cut(s) 366
BslFI GGGAC 4 cut(s) 80, 228, 687, 1019
BsmAI GTCTC 4 cut(s) 356, 450, 600, 1019
BsmFI GGGAC 4 cut(s) 80, 228, 687, 1019
BsmI GAATGC 1 cut(s) 6
BsnI GGCC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 356
BsoBI CYCGRG 2 cut(s) 502, 1065
Bsp1286I GDGCHC 4 cut(s) 385, 471, 649, 980
Bsp143I GATC 2 cut(s) 678, 868
BspACI CCGC 5 cut(s) 423, 425, 706, 888, 962
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 1 cut(s) 583
BspFNI CGCG 3 cut(s) 425, 628, 1010
BspLI GGNNCC 1 cut(s) 886
BspMAI CTGCAG 1 cut(s) 969
BspMI ACCTGC 1 cut(s) 394
BspTI CTTAAG 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 3 cut(s) 561, 670, 736
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 202, 423
BssMI GATC 2 cut(s) 678, 868
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 295, 308
Bst4CI ACNGT 4 cut(s) 67, 219, 230, 803
BstAFI CTTAAG 1 cut(s) 481
BstAPI GCANNNNNTGC 1 cut(s) 341
BstC8I GCNNGC 4 cut(s) 349, 702, 706, 1044
BstDEI CTNAG 2 cut(s) 317, 591
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 1015, 1089
BstFNI CGCG 3 cut(s) 425, 628, 1010
BstKTI GATC 2 cut(s) 681, 871
BstMAI GTCTC 4 cut(s) 356, 450, 600, 1019
BstMBI GATC 2 cut(s) 678, 868
BstMCI CGRYCG 3 cut(s) 66, 232, 423
BstMWI GCNNNNNNNGC 3 cut(s) 332, 341, 409
BstNI CCWGG 2 cut(s) 295, 308
BstNSI RCATGY 1 cut(s) 957
BstSCI CCNGG 2 cut(s) 293, 306
BstSFI CTRYAG 1 cut(s) 965
BstSLI GKGCMC 2 cut(s) 385, 980
BstUI CGCG 3 cut(s) 425, 628, 1010
BstV1I GCAGC 2 cut(s) 356, 951
BsuRI GGCC 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 1015, 1089
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 4 cut(s) 349, 702, 706, 1044
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 799
Cfr42I CCGCGG 1 cut(s) 426
CseI GACGC 1 cut(s) 1016
Csp6I GTAC 5 cut(s) 207, 564, 634, 729, 861
CspAI ACCGGT 1 cut(s) 365
CviAII CATG 3 cut(s) 99, 541, 954
CviQI GTAC 5 cut(s) 207, 564, 634, 729, 861
DdeI CTNAG 2 cut(s) 317, 591
DpnI GATC 2 cut(s) 680, 870
DpnII GATC 2 cut(s) 678, 868
DraI TTTAAA 2 cut(s) 58, 807
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 304
Ecl136II GAGCTC 2 cut(s) 469, 647
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 471, 649
Eco31I GGTCTC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 799
Eco53kI GAGCTC 2 cut(s) 469, 647
Eco57I CTGAAG 1 cut(s) 433
Eco88I CYCGRG 2 cut(s) 502, 1065
EcoICRI GAGCTC 2 cut(s) 469, 647
EcoRII CCWGG 2 cut(s) 293, 306
EcoT14I CCWWGG 1 cut(s) 202
EcoT38I GRGCYC 2 cut(s) 471, 649
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 3 cut(s) 102, 544, 957
FalI AAGNNNNNCTT 2 cut(s) 983, 1015
FaqI GGGAC 4 cut(s) 80, 228, 687, 1019
FatI CATG 3 cut(s) 98, 540, 953
FauI CCCGC 1 cut(s) 713
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 345, 888, 962, 965
FokI GGATG 2 cut(s) 1002, 1076
FriOI GRGCYC 2 cut(s) 471, 649
Fsp4HI GCNGC 4 cut(s) 345, 888, 962, 965
FspBI CTAG 3 cut(s) 251, 794, 1100
GluI GCNGC 4 cut(s) 345, 888, 962, 965
GsuI CTGGAG 2 cut(s) 455, 687
HaeIII GGCC 1 cut(s) 306
HapII CCGG 1 cut(s) 366
HgaI GACGC 1 cut(s) 1016
Hin1II CATG 3 cut(s) 102, 544, 957
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 5 cut(s) 37, 119, 298, 593, 848
HpaII CCGG 1 cut(s) 366
HphI GGTGA 3 cut(s) 128, 214, 380
Hpy166II GTNNAC 6 cut(s) 130, 222, 383, 799, 841, 910
Hpy188I TCNGA 5 cut(s) 452, 600, 651, 948, 1020
Hpy188III TCNNGA 4 cut(s) 472, 504, 787, 1065
Hpy8I GTNNAC 6 cut(s) 130, 222, 383, 799, 841, 910
Hpy99I CGWCG 1 cut(s) 1024
HpyAV CCTTC 1 cut(s) 817
HpyCH4III ACNGT 4 cut(s) 67, 219, 230, 803
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 6 cut(s) 248, 344, 383, 687, 741, 967
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 341, 409
HpyF3I CTNAG 2 cut(s) 317, 591
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 3 cut(s) 102, 544, 957
KspI CCGCGG 1 cut(s) 426
Kzo9I GATC 2 cut(s) 678, 868
LmnI GCTCC 4 cut(s) 474, 644, 827, 884
Lsp1109I GCAGC 2 cut(s) 356, 951
LweI GCATC 4 cut(s) 235, 344, 426, 728
MaeI CTAG 3 cut(s) 251, 794, 1100
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 6 cut(s) 69, 116, 368, 515, 661, 719
MalI GATC 2 cut(s) 680, 870
MboI GATC 2 cut(s) 678, 868
MboII GAAGA 1 cut(s) 103
MfeI CAATTG 1 cut(s) 762
MhlI GDGCHC 4 cut(s) 385, 471, 649, 980
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 8 cut(s) 172, 258, 328, 532, 568, 638, 762, 1054
MluI ACGCGT 1 cut(s) 1008
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 2 cut(s) 113, 602
MmeI TCCRAC 1 cut(s) 1043
MnlI CCTC 5 cut(s) 159, 314, 446, 895, 927
Mox20I TGGCCA 1 cut(s) 306
MscI TGGCCA 1 cut(s) 306
MseI TTAA 5 cut(s) 57, 482, 753, 774, 806
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 3 cut(s) 347, 425, 964
MspCI CTTAAG 1 cut(s) 481
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 2 cut(s) 295, 308
MssI GTTTAAAC 1 cut(s) 807
MunI CAATTG 1 cut(s) 762
Mva1269I GAATGC 1 cut(s) 6
MvaI CCWGG 2 cut(s) 295, 308
MvnI CGCG 3 cut(s) 425, 628, 1010
MwoI GCNNNNNNNGC 3 cut(s) 332, 341, 409
NdeII GATC 2 cut(s) 678, 868
NlaIII CATG 3 cut(s) 102, 544, 957
NlaIV GGNNCC 1 cut(s) 886
NmuCI GTSAC 4 cut(s) 69, 116, 368, 661
NspI RCATGY 1 cut(s) 957
PciI ACATGT 1 cut(s) 953
PctI GAATGC 1 cut(s) 6
PfeI GAWTC 3 cut(s) 37, 298, 848
PflFI GACNNNGTC 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 293
PinAI ACCGGT 1 cut(s) 365
PkrI GCNGC 4 cut(s) 346, 889, 963, 966
PleI GAGTC 2 cut(s) 113, 601
PmeI GTTTAAAC 1 cut(s) 807
PpsI GAGTC 2 cut(s) 113, 601
PscI ACATGT 1 cut(s) 953
Psp124BI GAGCTC 2 cut(s) 471, 649
Psp6I CCWGG 2 cut(s) 293, 306
PspGI CCWGG 2 cut(s) 293, 306
PspN4I GGNNCC 1 cut(s) 886
PspPI GGNCC 1 cut(s) 799
PstI CTGCAG 1 cut(s) 969
PsyI GACNNNGTC 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 5 cut(s) 208, 565, 635, 730, 862
RsaNI GTAC 5 cut(s) 207, 564, 634, 729, 861
SacI GAGCTC 2 cut(s) 471, 649
SacII CCGCGG 1 cut(s) 426
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 5 cut(s) 57, 482, 753, 774, 806
SatI GCNGC 4 cut(s) 345, 888, 962, 965
Sau3AI GATC 2 cut(s) 678, 868
Sau96I GGNCC 1 cut(s) 799
ScaI AGTACT 1 cut(s) 730
SchI GAGTC 2 cut(s) 113, 602
ScrFI CCNGG 2 cut(s) 295, 308
SduI GDGCHC 4 cut(s) 385, 471, 649, 980
SfaNI GCATC 4 cut(s) 235, 344, 426, 728
SfcI CTRYAG 1 cut(s) 965
Sfr303I CCGCGG 1 cut(s) 426
SgrBI CCGCGG 1 cut(s) 426
SinI GGWCC 1 cut(s) 799
SmlI CTYRAG 2 cut(s) 481, 780
SmoI CTYRAG 2 cut(s) 481, 780
SpeI ACTAGT 1 cut(s) 793
Sse9I AATT 8 cut(s) 172, 258, 328, 532, 568, 638, 762, 1054
SsiI CCGC 5 cut(s) 423, 425, 706, 888, 962
SspMI CTAG 3 cut(s) 251, 794, 1100
SstI GAGCTC 2 cut(s) 471, 649
StyD4I CCNGG 2 cut(s) 293, 306
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 4 cut(s) 67, 219, 230, 803
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 129, 442
TaqII GACCGA 1 cut(s) 999
TasI AATT 8 cut(s) 172, 258, 328, 532, 568, 638, 762, 1054
TatI WGTACW 1 cut(s) 728
TauI GCSGC 2 cut(s) 890, 964
TfiI GAWTC 3 cut(s) 37, 298, 848
Tru1I TTAA 5 cut(s) 57, 482, 753, 774, 806
Tru9I TTAA 5 cut(s) 57, 482, 753, 774, 806
TseFI GTSAC 4 cut(s) 69, 116, 368, 661
TseI GCWGC 2 cut(s) 344, 964
Tsp45I GTSAC 4 cut(s) 69, 116, 368, 661
TspDTI ATGAA 4 cut(s) 97, 410, 529, 1004
TspGWI ACGGA 2 cut(s) 909, 1037
Tth111I GACNNNGTC 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 481
VneI GTGCAC 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 799
XapI RAATTY 2 cut(s) 258, 328
XceI RCATGY 1 cut(s) 957
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 3 cut(s) 251, 794, 1100
ZrmI AGTACT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.