Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019620

Physical Location & Seq

Genomic Coordinates Reverse (-)

13339804 .. 13341228

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G35880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATCAAAGTGAATCCCTTCGTCTTCTTCGAAGTACTCTATCGACACATTTTTGGTTTTCAAGGATTAGTCAAAACCTTTTTCTTTCTCCTCTCCGTCATGCCCACAATCGCCCTCAACGGCCAGCTTATCGCGGGCCTATAGCTTACACTACCGCTTCTTCTTATCTCTCTTCTCACCGTCAATATAACCCTCTATCTTCTTCTCCCAAACTTCATTTCATCGCATCTTCTTCCCCTCGCTTCAAATCCTTAACTTGCTCAGCAAACTTACATTATCGGAAGAAGATTGAGCCTTCATCCAAAAAATTTCTCCTTAACTCATTTGCGAAATCTTTTATCGTCTCTGCGTCCTCCGCTAAGCCGAAAGATTCGTCCAATGTTAATCTCCGTAAGCCACTTGCGATATCTCTCGTCGTCACTACTGTTTCTTCCTCCGCATATGTGTTTCTTCTACGACTCTTTTCTCTTGCCTCGATTCTAAATGGTGGCGGAGGAGGAGGGAATTTGGGTGGAGGAGGAGGGAAATTTGGTGGAGGAGGAGATGGCGGATTTTGGAGGGGATTGTTTGCTCTGGCAATACCAGTGGCTATCGCCAACGAAGAACACTCACATGATTGGGATTCTTACGGTTTACCAGCGAACATTGTGTTAAGCTTGGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

222

Amino Acids

23.93

Weight (kDa)

10.38

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35880
pyrus_communis	pycom05g16550
rosa_multiflora	Rmu_co7982186.1_g000001
rosa_samantha	Rh5AG346000 Rh5BG356700 Rh7BG339400 Rh7CG367200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AciI	CCGC	6 cut(s)	135, 156, 357, 438, 492, 549
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	122
AcsI	RAATTY	3 cut(s)	308, 505, 527
AfaI	GTAC	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	63, 247
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	4 cut(s)	128, 146, 657, 665
AluI	AGCT	4 cut(s)	128, 146, 657, 665
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	122, 137
ApoI	RAATTY	3 cut(s)	308, 505, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
Asp700I	GAANNNNTTC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	170
AsuII	TTCGAA	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	17
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	141
BlpI	GCTNAGC	2 cut(s)	262, 360
BmcAI	AGTACT	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	137
BmsI	GCATC	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	17
Bpu1102I	GCTNAGC	2 cut(s)	262, 360
Bpu14I	TTCGAA	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	584
BseGI	GGATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	584
BseRI	GAGGAG	7 cut(s)	81, 510, 513, 531, 534, 552, 555
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	124, 139
BsmAI	GTCTC	1 cut(s)	349
BsmBI	CGTCTC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	124, 139
Bsp119I	TTCGAA	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	4
Bsp1720I	GCTNAGC	2 cut(s)	262, 360
BspACI	CCGC	6 cut(s)	135, 156, 357, 438, 492, 549
BspANI	GGCC	2 cut(s)	124, 139
BspCNI	CTCAG	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	135
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	584
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	3 cut(s)	182, 427, 632
Bst6I	CTCTTC	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	126, 137
BstDEI	CTNAG	2 cut(s)	262, 360
BstF5I	GGATG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	124, 139
BtgZI	GCGATG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	591
Cac8I	GCNNGC	2 cut(s)	126, 137
Cfr13I	GGNCC	1 cut(s)	137
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	36
CspCI	CAANNNNNGTGG	2 cut(s)	567, 602
CviAII	CATG	2 cut(s)	101, 614
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	2 cut(s)	262, 360
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	2 cut(s)	507, 564
Eco32I	GATATC	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	2 cut(s)	104, 617
FaiI	YATR	6 cut(s)	102, 143, 189, 442, 444, 615
FatI	CATG	2 cut(s)	100, 613
FauI	CCCGC	1 cut(s)	128
FauNDI	CATATG	1 cut(s)	442
FokI	GGATG	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	124, 139
HgaI	GACGC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	104, 617
HindIII	AAGCTT	1 cut(s)	655
HinfI	GANTC	5 cut(s)	14, 371, 459, 478, 623
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	635
Hpy188I	TCNGA	1 cut(s)	282
Hpy8I	GTNNAC	1 cut(s)	635
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	29, 306
HpyCH4III	ACNGT	3 cut(s)	182, 427, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	262, 360
Hsp92II	CATG	2 cut(s)	104, 617
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	662
LpnPI	CCDG	4 cut(s)	138, 560, 597, 651
LweI	GCATC	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MluCI	AATT	3 cut(s)	308, 505, 527
MlyI	GAGTC	1 cut(s)	453
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	5 cut(s)	254, 318, 384, 653, 667
MslI	CAYNNNNRTG	1 cut(s)	612
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	104, 617
NmuCI	GTSAC	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	4 cut(s)	14, 371, 478, 623
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	5 cut(s)	254, 318, 384, 653, 667
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	137
ScaI	AGTACT	1 cut(s)	37
SchI	GAGTC	1 cut(s)	453
SetI	ASST	5 cut(s)	81, 130, 148, 659, 667
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	3 cut(s)	308, 505, 527
SsiI	CCGC	6 cut(s)	135, 156, 357, 438, 492, 549
TaaI	ACNGT	3 cut(s)	182, 427, 632
TaqI	TCGA	3 cut(s)	31, 44, 476
TasI	AATT	3 cut(s)	308, 505, 527
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	4 cut(s)	14, 371, 478, 623
Tru1I	TTAA	5 cut(s)	254, 318, 384, 653, 667
Tru9I	TTAA	5 cut(s)	254, 318, 384, 653, 667
TscAI	CASTG	1 cut(s)	591
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	206, 211, 288
TspGWI	ACGGA	2 cut(s)	86, 380
TspRI	CASTG	1 cut(s)	591
XapI	RAATTY	3 cut(s)	308, 505, 527
XmnI	GAANNNNTTC	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.