pycom05g16550

Protein TOC75-3, chloroplastic-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
19840204 .. 19841141
938 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16550.1

Sequence Viewer

Length: 693 bp
ATGGAGAAACAACAGGAGCACGAGGTTTACGGTGCCGAGATCCCCAACGACGGTGGAAAATACGTCGACATGTCATTCAGGGATCTCGGATACAGGAGGAGGCCGGCGCTCTCCGCGACATGGTTCCAAGGTTCAGACGGCCATGGCGGAAGATCCCAAGAGTGGGACTCGCATGGGTTACCGGCCAACATTGTTGTCCAGCTCAACAAGCTCAGTGGGTTCAAGAAATACAAGGTCCCCGAGATCTTGTTCTCCGATCCGCGGCCGTGGAGCATCGTCGGCACCGAAGACTCGTTCTTCATGGTATTCCTCAGACCCTGCGGCGTTTACACCAAAGCCCAGTTGCAAAAGGAGCTCGAGACCTTAGCCAATTGCAGGATGCTCGAGAAGATCGATTTGGAAGGGAAGACCAACCCAAATGGGACTTTGGGCGTGACGATTTCGTCTACAGAGAGCAAGACAAGTTTTGATGCATCATTGTGGGAAAAGCACGAGTATTTGGGGAACCAGGAGAAGGATTACAACAGAAGGATTTATAGGGCGAGGCCGTGTTTGTTGCCGGCGCCTGTGCAGAGGGAGGTGTTGCTGATTGTGAGAGAACAAGGGAAGGTGAGTGCAAGGCTTTCGCAGAAGATTCGCGACCGCGTTCAGAAGTGGTACCAGGATGAAGGTATGCTTCTGCACAGGTTGTGA

Protein Analysis

231

Amino Acids

26.51

Weight (kDa)

8.87

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POTRA1_3_Toc75 PF25282 61 - 150 7.6e-28 Toc75-like, POTRA domain
POTRA2_Toc75 PF25280 146 - 226 3.1e-24 Toc75-like, second POTRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019620)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35880
pyrus_communis pycom05g16550
rosa_multiflora Rmu_co7982186.1_g000001
rosa_samantha Rh5AG346000 Rh5BG356700 Rh7BG339400 Rh7CG367200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 442
Acc65I GGTACC 1 cut(s) 657
AccB1I GGYRCC 4 cut(s) 32, 281, 562, 657
AccI GTMKAC 2 cut(s) 66, 446
AccII CGCG 4 cut(s) 116, 262, 639, 645
AciI CCGC 6 cut(s) 114, 147, 260, 262, 321, 643
AclWI GGATC 4 cut(s) 34, 90, 147, 251
AcoI YGGCCR 3 cut(s) 139, 183, 263
AcyI GRCGYC 1 cut(s) 563
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 7 cut(s) 50, 120, 162, 163, 261, 375, 514
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 2 cut(s) 507, 660
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 3 cut(s) 202, 211, 355
AluI AGCT 3 cut(s) 202, 211, 355
Alw21I GWGCWC 2 cut(s) 21, 357
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 4 cut(s) 34, 90, 147, 251
AlwNI CAGNNNCTG 1 cut(s) 318
Ama87I CYCGRG 3 cut(s) 239, 356, 383
AoxI GGCC 5 cut(s) 101, 139, 183, 263, 545
Asp718I GGTACC 1 cut(s) 657
AspLEI GCGC 2 cut(s) 109, 565
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 622
AvaI CYCGRG 3 cut(s) 239, 356, 383
AvaII GGWCC 1 cut(s) 235
BanI GGYRCC 4 cut(s) 32, 281, 562, 657
BanII GRGCYC 1 cut(s) 357
BauI CACGAG 2 cut(s) 20, 491
BbsI GAAGAC 2 cut(s) 294, 413
Bbv12I GWGCWC 2 cut(s) 21, 357
BceAI ACGGC 3 cut(s) 154, 250, 532
BcgI CGANNNNNNTGC 6 cut(s) 364, 398, 606, 617, 640, 651
BciT130I CCWGG 2 cut(s) 509, 662
BciVI GTATCC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 447
BfoI RGCGCY 2 cut(s) 110, 566
BfuI GTATCC 1 cut(s) 83
BglII AGATCT 1 cut(s) 243
BisI GCNGC 2 cut(s) 263, 322
BlsI GCNGC 2 cut(s) 264, 323
Bme1390I CCNGG 2 cut(s) 509, 662
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 3 cut(s) 239, 356, 383
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 7 cut(s) 34, 125, 237, 283, 506, 564, 659
BmrFI CCNGG 2 cut(s) 509, 662
BmrI ACTGGG 1 cut(s) 334
BmsI GCATC 4 cut(s) 282, 369, 460, 482
BmuI ACTGGG 1 cut(s) 334
BpiI GAAGAC 2 cut(s) 294, 413
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bpu10I CCTNAGC 1 cut(s) 364
Bsa29I ATCGAT 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 127, 142, 260, 266
Bsc4I CCNNNNNNNGG 7 cut(s) 50, 120, 162, 163, 261, 375, 514
Bse118I RCCGGY 3 cut(s) 103, 181, 559
Bse1I ACTGG 1 cut(s) 340
BseBI CCWGG 2 cut(s) 509, 662
BseCI ATCGAT 1 cut(s) 393
BseDI CCNNGG 4 cut(s) 127, 142, 260, 266
BseGI GGATG 2 cut(s) 384, 670
BseLI CCNNNNNNNGG 7 cut(s) 50, 120, 162, 163, 261, 375, 514
BseMII CTCAG 2 cut(s) 226, 325
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 112
BseX3I CGGCCG 1 cut(s) 263
BsgI GTGCAG 2 cut(s) 590, 665
Bsh1236I CGCG 4 cut(s) 116, 262, 639, 645
Bsh1285I CGRYCG 2 cut(s) 266, 643
BshFI GGCC 5 cut(s) 103, 141, 185, 265, 547
BshNI GGYRCC 4 cut(s) 32, 281, 562, 657
BshVI ATCGAT 1 cut(s) 393
BsiEI CGRYCG 2 cut(s) 266, 643
BsiHKAI GWGCWC 2 cut(s) 21, 357
BsiHKCI CYCGRG 3 cut(s) 239, 356, 383
BsiSI CCGG 3 cut(s) 104, 182, 560
BslFI GGGAC 3 cut(s) 179, 221, 436
BslI CCNNNNNNNGG 7 cut(s) 50, 120, 162, 163, 261, 375, 514
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 3 cut(s) 179, 221, 436
BsnI GGCC 5 cut(s) 103, 141, 185, 265, 547
Bso31I GGTCTC 1 cut(s) 353
BsoBI CYCGRG 3 cut(s) 239, 356, 383
Bsp1286I GDGCHC 2 cut(s) 21, 357
Bsp143I GATC 6 cut(s) 39, 82, 152, 243, 256, 390
Bsp19I CCATGG 1 cut(s) 142
Bsp68I TCGCGA 1 cut(s) 639
BspACI CCGC 6 cut(s) 114, 147, 260, 262, 321, 643
BspANI GGCC 5 cut(s) 103, 141, 185, 265, 547
BspCNI CTCAG 2 cut(s) 225, 324
BspDI ATCGAT 1 cut(s) 393
BspFNI CGCG 4 cut(s) 116, 262, 639, 645
BspLI GGNNCC 7 cut(s) 34, 125, 237, 283, 506, 564, 659
BspPI GGATC 4 cut(s) 34, 90, 147, 251
BspT107I GGYRCC 4 cut(s) 32, 281, 562, 657
BspTNI GGTCTC 1 cut(s) 353
BsrFI RCCGGY 3 cut(s) 103, 181, 559
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 3 cut(s) 103, 181, 559
BssECI CCNNGG 4 cut(s) 127, 142, 260, 266
BssMI GATC 6 cut(s) 39, 82, 152, 243, 256, 390
BssNI GRCGYC 1 cut(s) 563
BssSI CACGAG 2 cut(s) 20, 491
BssT1I CCWWGG 2 cut(s) 127, 142
Bst2BI CACGAG 2 cut(s) 20, 491
Bst2UI CCWGG 2 cut(s) 509, 662
Bst4CI ACNGT 2 cut(s) 32, 53
BstACI GRCGYC 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 105, 561
BstDEI CTNAG 3 cut(s) 212, 311, 364
BstDSI CCRYGG 3 cut(s) 142, 260, 266
BstEII GGTNACC 1 cut(s) 177
BstF5I GGATG 2 cut(s) 384, 670
BstFNI CGCG 4 cut(s) 116, 262, 639, 645
BstH2I RGCGCY 2 cut(s) 110, 566
BstHHI GCGC 2 cut(s) 109, 565
BstKTI GATC 6 cut(s) 42, 85, 155, 246, 259, 393
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 6 cut(s) 39, 82, 152, 243, 256, 390
BstMCI CGRYCG 2 cut(s) 266, 643
BstMWI GCNNNNNNNGC 4 cut(s) 113, 208, 279, 352
BstNI CCWGG 2 cut(s) 509, 662
BstNSI RCATGY 1 cut(s) 73
BstPI GGTNACC 1 cut(s) 177
BstSCI CCNGG 2 cut(s) 507, 660
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 4 cut(s) 116, 262, 639, 645
BstV2I GAAGAC 2 cut(s) 294, 413
BstX2I RGATCY 4 cut(s) 39, 82, 152, 243
BstYI RGATCY 4 cut(s) 39, 82, 152, 243
BstZI CGGCCG 1 cut(s) 263
Bsu15I ATCGAT 1 cut(s) 393
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 5 cut(s) 103, 141, 185, 265, 547
BsuTUI ATCGAT 1 cut(s) 393
BtgI CCRYGG 3 cut(s) 142, 260, 266
BtsCI GGATG 2 cut(s) 384, 670
BtsIMutI CAGTG 1 cut(s) 220
BtuMI TCGCGA 1 cut(s) 639
Cac8I GCNNGC 2 cut(s) 105, 561
CaiI CAGNNNCTG 1 cut(s) 318
CfoI GCGC 2 cut(s) 109, 565
Cfr10I RCCGGY 3 cut(s) 103, 181, 559
Cfr13I GGNCC 1 cut(s) 235
Cfr42I CCGCGG 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 393
Csp6I GTAC 1 cut(s) 658
CspCI CAANNNNNGTGG 4 cut(s) 34, 69, 196, 231
CviAII CATG 5 cut(s) 70, 120, 143, 173, 301
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 3 cut(s) 212, 311, 364
DinI GGCGCC 1 cut(s) 564
DpnI GATC 6 cut(s) 41, 84, 154, 245, 258, 392
DpnII GATC 6 cut(s) 39, 82, 152, 243, 256, 390
DrdI GACNNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 442
EaeI YGGCCR 3 cut(s) 139, 183, 263
EagI CGGCCG 1 cut(s) 263
EciI GGCGGA 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 355
EclXI CGGCCG 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 127, 142
Eco24I GRGCYC 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 235
Eco52I CGGCCG 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 355
Eco88I CYCGRG 3 cut(s) 239, 356, 383
Eco91I GGTNACC 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 507, 660
EcoT14I CCWWGG 2 cut(s) 127, 142
EcoT22I ATGCAT 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 357
EgeI GGCGCC 1 cut(s) 564
EheI GGCGCC 1 cut(s) 564
ErhI CCWWGG 2 cut(s) 127, 142
FaeI CATG 5 cut(s) 73, 123, 146, 176, 304
FaiI YATR 7 cut(s) 71, 121, 144, 174, 302, 537, 674
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FaqI GGGAC 3 cut(s) 179, 221, 436
FatI CATG 5 cut(s) 69, 119, 142, 172, 300
FblI GTMKAC 2 cut(s) 66, 446
Fnu4HI GCNGC 2 cut(s) 263, 322
FokI GGATG 2 cut(s) 391, 677
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 263, 322
GlaI GCGC 2 cut(s) 108, 564
GluI GCNGC 2 cut(s) 263, 322
HaeII RGCGCY 2 cut(s) 110, 566
HaeIII GGCC 5 cut(s) 103, 141, 185, 265, 547
HapII CCGG 3 cut(s) 104, 182, 560
HhaI GCGC 2 cut(s) 109, 565
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 5 cut(s) 73, 123, 146, 176, 304
Hin6I GCGC 2 cut(s) 107, 563
HinP1I GCGC 2 cut(s) 107, 563
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 3 cut(s) 167, 290, 634
HpaII CCGG 3 cut(s) 104, 182, 560
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 4 cut(s) 28, 67, 328, 447
Hpy188I TCNGA 5 cut(s) 89, 136, 256, 314, 651
Hpy188III TCNNGA 4 cut(s) 223, 358, 385, 638
Hpy8I GTNNAC 4 cut(s) 28, 67, 328, 447
Hpy99I CGWCG 3 cut(s) 53, 68, 281
HpyAV CCTTC 5 cut(s) 395, 508, 522, 601, 662
HpyCH4III ACNGT 2 cut(s) 32, 53
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 346, 375, 473, 571, 617, 682
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 208, 279, 352
HpyF3I CTNAG 3 cut(s) 212, 311, 364
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 5 cut(s) 73, 123, 146, 176, 304
HspAI GCGC 2 cut(s) 107, 563
KasI GGCGCC 1 cut(s) 562
KpnI GGTACC 1 cut(s) 661
KroI GCCGGC 2 cut(s) 103, 559
KroNI GCCGGC 2 cut(s) 105, 561
KspI CCGCGG 1 cut(s) 263
Kzo9I GATC 6 cut(s) 39, 82, 152, 243, 256, 390
LmnI GCTCC 3 cut(s) 16, 270, 352
LweI GCATC 4 cut(s) 282, 369, 460, 482
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 177, 433
MalI GATC 6 cut(s) 41, 84, 154, 245, 258, 392
MboI GATC 6 cut(s) 39, 82, 152, 243, 256, 390
MboII GAAGA 6 cut(s) 162, 289, 299, 400, 418, 643
MfeI CAATTG 1 cut(s) 370
MflI RGATCY 4 cut(s) 39, 82, 152, 243
MhlI GDGCHC 2 cut(s) 21, 357
MluCI AATT 1 cut(s) 370
Mly113I GGCGCC 1 cut(s) 563
MlyI GAGTC 2 cut(s) 161, 284
MnlI CCTC 7 cut(s) 16, 90, 93, 320, 537, 567, 571
Mph1103I ATGCAT 1 cut(s) 475
MroNI GCCGGC 2 cut(s) 103, 559
MslI CAYNNNNRTG 1 cut(s) 478
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 3 cut(s) 104, 182, 560
MspR9I CCNGG 2 cut(s) 509, 662
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 2 cut(s) 509, 662
MvnI CGCG 4 cut(s) 116, 262, 639, 645
MwoI GCNNNNNNNGC 4 cut(s) 113, 208, 279, 352
NaeI GCCGGC 2 cut(s) 105, 561
NarI GGCGCC 1 cut(s) 563
NcoI CCATGG 1 cut(s) 142
NdeII GATC 6 cut(s) 39, 82, 152, 243, 256, 390
NgoMIV GCCGGC 2 cut(s) 103, 559
NlaIII CATG 5 cut(s) 73, 123, 146, 176, 304
NlaIV GGNNCC 7 cut(s) 34, 125, 237, 283, 506, 564, 659
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 433
NruI TCGCGA 1 cut(s) 639
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 1 cut(s) 73
PaeR7I CTCGAG 2 cut(s) 356, 383
PciI ACATGT 1 cut(s) 69
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 390
PdiI GCCGGC 2 cut(s) 105, 561
PfeI GAWTC 1 cut(s) 634
PkrI GCNGC 2 cut(s) 264, 323
PleI GAGTC 2 cut(s) 161, 284
PluTI GGCGCC 1 cut(s) 566
PpsI GAGTC 2 cut(s) 161, 284
PpuMI RGGWCCY 1 cut(s) 235
PscI ACATGT 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 507, 660
PspEI GGTNACC 1 cut(s) 177
PspGI CCWGG 2 cut(s) 507, 660
PspN4I GGNNCC 7 cut(s) 34, 125, 237, 283, 506, 564, 659
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 318
PsuI RGATCY 4 cut(s) 39, 82, 152, 243
RruI TCGCGA 1 cut(s) 639
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
RseI CAYNNNNRTG 1 cut(s) 478
SacI GAGCTC 1 cut(s) 357
SacII CCGCGG 1 cut(s) 263
SalI GTCGAC 1 cut(s) 65
SatI GCNGC 2 cut(s) 263, 322
Sau3AI GATC 6 cut(s) 39, 82, 152, 243, 256, 390
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 2 cut(s) 161, 284
ScrFI CCNGG 2 cut(s) 509, 662
SduI GDGCHC 2 cut(s) 21, 357
SfaNI GCATC 4 cut(s) 282, 369, 460, 482
SfcI CTRYAG 1 cut(s) 447
SfoI GGCGCC 1 cut(s) 564
Sfr274I CTCGAG 2 cut(s) 356, 383
Sfr303I CCGCGG 1 cut(s) 263
SgrBI CCGCGG 1 cut(s) 263
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 2 cut(s) 356, 383
SmiMI CAYNNNNRTG 1 cut(s) 478
SmlI CTYRAG 2 cut(s) 356, 383
SmoI CTYRAG 2 cut(s) 356, 383
Sse9I AATT 1 cut(s) 370
SsiI CCGC 6 cut(s) 114, 147, 260, 262, 321, 643
SspDI GGCGCC 1 cut(s) 562
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 2 cut(s) 507, 660
StyI CCWWGG 2 cut(s) 127, 142
TaaI ACNGT 2 cut(s) 32, 53
TaiI ACGT 1 cut(s) 66
TaqI TCGA 4 cut(s) 66, 357, 384, 393
TasI AATT 1 cut(s) 370
TauI GCSGC 2 cut(s) 265, 324
TfiI GAWTC 1 cut(s) 634
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 2 cut(s) 289, 681
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 235
XceI RCATGY 1 cut(s) 73
XhoI CTCGAG 2 cut(s) 356, 383
XmiI GTMKAC 2 cut(s) 66, 446
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.