Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7982186.1

Orthogroup ID

OG0019620

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 506

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7982186.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

atgttggccgctgcgccgcccaggacctaccgcacccccaccactctcacttcctcctcctcctcctcctccgctcgcaaattagcctcgccctcctccgccgctacagccaccaacaacacccgccccctaatcgtcaaatgctgcgccgtctctccctcctcctcctcctcctcgcccctttctcaaaaccctaaaccctctccgaatctcctccaaaacgtcgccaaaaccgtcgccggcgtcaccaccgtcaccctcgtcttgaacttgagcaatttccccgccttcctcggaggcggcggtggcaattccggcggcggaggcggaggcggtggaggaggaggtgatggttcgggcggcggcggtttttggaggaggctgttcgggccgcagctggtggcgaatgccgacgagccacagtcgcaggagtgggactctcacggattgccggccaacattgtggtccagctcaacaagctcagtggcttcaagaaatacaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

168

Amino Acids

16.79

Weight (kDa)

10.18

Isoelectric Point (pI)

67.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35880
pyrus_communis	pycom05g16550
rosa_multiflora	Rmu_co7982186.1_g000001
rosa_samantha	Rh5AG346000 Rh5BG356700 Rh7BG339400 Rh7CG367200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	74
AcoI	YGGCCR	2 cut(s)	6, 453
AcyI	GRCGYC	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	268, 493
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	397, 472, 481
AluI	AGCT	3 cut(s)	397, 472, 481
Alw26I	GTCTC	1 cut(s)	157
AoxI	GGCC	3 cut(s)	6, 389, 453
ApeKI	GCWGC	3 cut(s)	11, 144, 394
AspLEI	GCGC	2 cut(s)	16, 149
AspS9I	GGNCC	3 cut(s)	24, 389, 466
AsuHPI	GGTGA	3 cut(s)	238, 247, 359
AvaII	GGWCC	2 cut(s)	24, 466
BbvI	GCAGC	2 cut(s)	131, 406
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	2 cut(s)	24, 466
BmgT120I	GGNCC	3 cut(s)	24, 389, 466
BmrFI	CCNGG	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BpuEI	CTTGAG	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	20, 292
Bse118I	RCCGGY	2 cut(s)	239, 451
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	20, 292
BseMII	CTCAG	1 cut(s)	496
BseXI	GCAGC	2 cut(s)	131, 406
BshFI	GGCC	3 cut(s)	8, 391, 455
BsiSI	CCGG	3 cut(s)	240, 315, 452
BslFI	GGGAC	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	3 cut(s)	8, 391, 455
BspANI	GGCC	3 cut(s)	8, 391, 455
BspCNI	CTCAG	1 cut(s)	495
BsrBI	CCGCTC	1 cut(s)	74
BsrFI	RCCGGY	2 cut(s)	239, 451
BssAI	RCCGGY	2 cut(s)	239, 451
BssECI	CCNNGG	2 cut(s)	20, 292
BssNI	GRCGYC	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	3 cut(s)	235, 253, 423
BstACI	GRCGYC	1 cut(s)	243
BstC8I	GCNNGC	3 cut(s)	76, 241, 453
BstDEI	CTNAG	1 cut(s)	482
BstHHI	GCGC	2 cut(s)	16, 149
BstMAI	GTCTC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	7 cut(s)	107, 306, 315, 324, 388, 424, 478
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	131, 406
BstXI	CCANNNNNNTGG	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	8, 391, 455
BtsIMutI	CAGTG	1 cut(s)	490
Cac8I	GCNNGC	3 cut(s)	76, 241, 453
CfoI	GCGC	2 cut(s)	16, 149
Cfr10I	RCCGGY	2 cut(s)	239, 451
Cfr13I	GGNCC	3 cut(s)	24, 389, 466
CseI	GACGC	1 cut(s)	232
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
DdeI	CTNAG	1 cut(s)	482
EaeI	YGGCCR	2 cut(s)	6, 453
EciI	GGCGGA	3 cut(s)	88, 336, 342
Eco47I	GGWCC	2 cut(s)	24, 466
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	157
FaqI	GGGAC	1 cut(s)	449
FauI	CCCGC	2 cut(s)	131, 292
GlaI	GCGC	2 cut(s)	15, 148
HaeIII	GGCC	3 cut(s)	8, 391, 455
HapII	CCGG	3 cut(s)	240, 315, 452
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	2 cut(s)	16, 149
Hin1I	GRCGYC	1 cut(s)	243
Hin6I	GCGC	2 cut(s)	14, 147
HinP1I	GCGC	2 cut(s)	14, 147
HinfI	GANTC	2 cut(s)	208, 437
HpaII	CCGG	3 cut(s)	240, 315, 452
HphI	GGTGA	3 cut(s)	238, 247, 359
Hpy188I	TCNGA	2 cut(s)	207, 296
Hpy188III	TCNNGA	2 cut(s)	265, 493
Hpy99I	CGWCG	3 cut(s)	227, 239, 416
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	3 cut(s)	235, 253, 423
HpyCH4IV	ACGT	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	7 cut(s)	107, 306, 315, 324, 388, 424, 478
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	243
HspAI	GCGC	2 cut(s)	14, 147
KroI	GCCGGC	2 cut(s)	239, 451
KroNI	GCCGGC	2 cut(s)	241, 453
LpnPI	CCDG	8 cut(s)	7, 34, 253, 328, 383, 413, 465, 482
Lsp1109I	GCAGC	2 cut(s)	131, 406
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	244, 253
MbiI	CCGCTC	1 cut(s)	74
MluCI	AATT	3 cut(s)	80, 277, 310
MlyI	GAGTC	1 cut(s)	431
MreI	CGCCGGCG	1 cut(s)	239
MroNI	GCCGGC	2 cut(s)	239, 451
MspA1I	CMGCKG	2 cut(s)	11, 397
MspI	CCGG	3 cut(s)	240, 315, 452
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	7 cut(s)	107, 306, 315, 324, 388, 424, 478
NaeI	GCCGGC	2 cut(s)	241, 453
NgoMIV	GCCGGC	2 cut(s)	239, 451
NmuCI	GTSAC	2 cut(s)	244, 253
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	412
PdiI	GCCGGC	2 cut(s)	241, 453
PfeI	GAWTC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspPI	GGNCC	3 cut(s)	24, 389, 466
PspPPI	RGGWCCY	1 cut(s)	24
PvuII	CAGCTG	1 cut(s)	397
Sau96I	GGNCC	3 cut(s)	24, 389, 466
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	6 cut(s)	29, 225, 349, 399, 474, 483
SfcI	CTRYAG	1 cut(s)	105
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	2 cut(s)	24, 466
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	3 cut(s)	80, 277, 310
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	3 cut(s)	235, 253, 423
TaiI	ACGT	1 cut(s)	225
TasI	AATT	3 cut(s)	80, 277, 310
TauI	GCSGC	8 cut(s)	11, 19, 104, 303, 321, 363, 366, 394
TfiI	GAWTC	1 cut(s)	208
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	2 cut(s)	244, 253
TseI	GCWGC	3 cut(s)	11, 144, 394
Tsp45I	GTSAC	2 cut(s)	244, 253
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	2 cut(s)	24, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.