AT1G36675

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020215
Physical Location & Seq
Forward (+)
13867568 .. 13869490
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G36675.1

Sequence Viewer

Length: 807 bp
ATGTCGTCAGCTATTACAAACCACCGTCCATATCATGGATCGATTATGTCACCGTCGTCTCAAGCACCCTCTTATTCTTCTACTCCAATGGGTAATGAAACTAATACGAATGTTGGAGCAACTGAATTCCCGGAATTTTCTACACAAATGGCTCTTGGTGTTATGAGTGGTGTTCACGAAACTATTCCAAATGAAGAGGATTTAACTTGTAATCATTCGAGAAGCTCCAAATGGACCACTGATCAAAATTTGGTGCTACTGAGTAGGTGGATTAAATATGAACAAATAGTATCGTTGGTAGAAACCAAAAAGGATAACGTTAAACGCATGCAACAAAGTGGGTGGTCTAAGGATGGTGTATTGGCAAAAGCGCATGAACTATATTCAAATGCTGGAAATACTGGTTCTGGAAGTAGTGGATCTAAGAGAACCCACGAGAGTGATGTCAGGGATGCAAACTCTGTAGGATCTAGTGCTCGTCCAATAGGGAGTGATATTGCTAAGAAAAAAACAAAAAAGAAAGACCTATCAAGCAGCGACAACTACTTCACCAAACGATTTGAGGCAACCAAGAAAGAAGATGGCCGTGGAAATGGCCGTGGTGGTGGAAGTAGAGATGGTCGTGGTGGTGGAAGTGGAGATGGTCGTGGAATTGGTGGTGGTTACCGTGGAAGAGGAATAATTCCGGCTGCATTTATGGGCCGTGGCCGTGGAAGTGGTAACCATGGTCAAATGTCCATTGACGCCTTGCTAGCTCAAGAAGCAAGGAAATTGATGTCGGCTCTTCATCCAGACAGACTTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

268

Amino Acids

28.64

Weight (kDa)

9.7

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36675 AT2G10975 AT3G29637 AT3G29637 AT3G29645 AT5G33390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AclI AACGTT 1 cut(s) 318
AclWI GGATC 3 cut(s) 46, 427, 475
AcoI YGGCCR 3 cut(s) 583, 595, 706
AcsI RAATTY 3 cut(s) 125, 134, 247
AcyI GRCGYC 1 cut(s) 744
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 387
AleI CACNNNNGTG 1 cut(s) 438
AluBI AGCT 3 cut(s) 11, 225, 755
AluI AGCT 3 cut(s) 11, 225, 755
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 3 cut(s) 46, 427, 475
AoxI GGCC 4 cut(s) 583, 595, 700, 706
ApeKI GCWGC 2 cut(s) 534, 689
ApoI RAATTY 3 cut(s) 125, 134, 247
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 2 cut(s) 234, 700
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 42, 541
AsuNHI GCTAGC 1 cut(s) 751
AvaII GGWCC 1 cut(s) 234
BauI CACGAG 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 2 cut(s) 546, 676
BccI CCATC 4 cut(s) 347, 575, 611, 635
BceAI ACGGC 4 cut(s) 570, 582, 687, 693
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 2 cut(s) 471, 752
BfmI CTRYAG 1 cut(s) 462
BisI GCNGC 2 cut(s) 535, 690
BlsI GCNGC 2 cut(s) 536, 691
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 2 cut(s) 234, 700
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 442
BmtI GCTAGC 1 cut(s) 755
BpuEI CTTGAG 2 cut(s) 45, 741
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 744
BsaJI CCNNGG 6 cut(s) 586, 598, 667, 703, 709, 724
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 41
BseDI CCNNGG 6 cut(s) 586, 598, 667, 703, 709, 724
BseGI GGATG 3 cut(s) 358, 457, 787
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 406
BseXI GCAGC 2 cut(s) 546, 676
BshFI GGCC 4 cut(s) 585, 597, 702, 708
BshVI ATCGAT 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 478
BsiSI CCGG 2 cut(s) 131, 686
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 63
BsmBI CGTCTC 1 cut(s) 63
BsnI GGCC 4 cut(s) 585, 597, 702, 708
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 4 cut(s) 38, 241, 419, 467
Bsp19I CCATGG 1 cut(s) 724
BspANI GGCC 4 cut(s) 585, 597, 702, 708
BspCNI CTCAG 1 cut(s) 252
BspDI ATCGAT 1 cut(s) 41
BspOI GCTAGC 1 cut(s) 755
BspPI GGATC 3 cut(s) 46, 427, 475
BspQI GCTCTTC 1 cut(s) 789
BsrI ACTGG 1 cut(s) 406
BssECI CCNNGG 6 cut(s) 586, 598, 667, 703, 709, 724
BssMI GATC 4 cut(s) 38, 241, 419, 467
BssNI GRCGYC 1 cut(s) 744
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 724
Bst2BI CACGAG 1 cut(s) 434
Bst4CI ACNGT 3 cut(s) 26, 54, 668
Bst6I CTCTTC 3 cut(s) 189, 667, 789
BstACI GRCGYC 1 cut(s) 744
BstC8I GCNNGC 2 cut(s) 329, 753
BstDEI CTNAG 4 cut(s) 260, 348, 423, 501
BstDSI CCRYGG 6 cut(s) 586, 598, 667, 703, 709, 724
BstEII GGTNACC 2 cut(s) 662, 719
BstF5I GGATG 3 cut(s) 358, 457, 787
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 4 cut(s) 41, 244, 422, 470
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 4 cut(s) 38, 241, 419, 467
BstMWI GCNNNNNNNGC 2 cut(s) 752, 761
BstNSI RCATGY 1 cut(s) 331
BstPI GGTNACC 2 cut(s) 662, 719
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 462
BstV1I GCAGC 2 cut(s) 546, 676
BstX2I RGATCY 2 cut(s) 419, 467
BstYI RGATCY 2 cut(s) 419, 467
Bsu15I ATCGAT 1 cut(s) 41
BsuRI GGCC 4 cut(s) 585, 597, 702, 708
BsuTUI ATCGAT 1 cut(s) 41
BtgI CCRYGG 6 cut(s) 586, 598, 667, 703, 709, 724
BtsCI GGATG 3 cut(s) 358, 457, 787
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 329, 753
CfoI GCGC 1 cut(s) 373
Cfr13I GGNCC 2 cut(s) 234, 700
ClaI ATCGAT 1 cut(s) 41
CseI GACGC 1 cut(s) 752
CspCI CAANNNNNGTGG 2 cut(s) 323, 358
CviAII CATG 4 cut(s) 35, 328, 374, 725
DdeI CTNAG 4 cut(s) 260, 348, 423, 501
DpnI GATC 4 cut(s) 40, 243, 421, 469
DpnII GATC 4 cut(s) 38, 241, 419, 467
EaeI YGGCCR 3 cut(s) 583, 595, 706
Eam1104I CTCTTC 3 cut(s) 189, 667, 789
EarI CTCTTC 3 cut(s) 189, 667, 789
Eco130I CCWWGG 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 234
Eco91I GGTNACC 2 cut(s) 662, 719
EcoO65I GGTNACC 2 cut(s) 662, 719
EcoRI GAATTC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 724
ErhI CCWWGG 1 cut(s) 724
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 4 cut(s) 38, 331, 377, 728
FatI CATG 4 cut(s) 34, 327, 373, 724
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 535, 690
FokI GGATG 3 cut(s) 365, 464, 774
Fsp4HI GCNGC 2 cut(s) 535, 690
FspBI CTAG 2 cut(s) 471, 752
GlaI GCGC 1 cut(s) 372
GluI GCNGC 2 cut(s) 535, 690
HaeIII GGCC 4 cut(s) 585, 597, 702, 708
HapII CCGG 2 cut(s) 131, 686
HgaI GACGC 1 cut(s) 752
HhaI GCGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 744
Hin1II CATG 4 cut(s) 38, 331, 377, 728
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HpaII CCGG 2 cut(s) 131, 686
HphI GGTGA 2 cut(s) 42, 541
Hpy166II GTNNAC 1 cut(s) 175
Hpy188III TCNNGA 5 cut(s) 176, 219, 408, 758, 791
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 58
HpyCH4III ACNGT 3 cut(s) 26, 54, 668
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 3 cut(s) 331, 455, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 752, 761
HpyF3I CTNAG 4 cut(s) 260, 348, 423, 501
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 744
Hsp92II CATG 4 cut(s) 38, 331, 377, 728
HspAI GCGC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 4 cut(s) 38, 241, 419, 467
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 2 cut(s) 116, 230
LpnPI CCDG 6 cut(s) 144, 378, 387, 393, 433, 699
Lsp1109I GCAGC 2 cut(s) 546, 676
LweI GCATC 1 cut(s) 442
MaeI CTAG 2 cut(s) 471, 752
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 3 cut(s) 48, 662, 719
MalI GATC 4 cut(s) 40, 243, 421, 469
MboI GATC 4 cut(s) 38, 241, 419, 467
MboII GAAGA 5 cut(s) 69, 206, 590, 684, 776
MflI RGATCY 2 cut(s) 419, 467
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 6 cut(s) 125, 134, 247, 651, 681, 770
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 4 cut(s) 79, 190, 556, 668
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 3 cut(s) 203, 273, 321
MslI CAYNNNNRTG 1 cut(s) 438
MspI CCGG 2 cut(s) 131, 686
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 752, 761
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 724
NdeII GATC 4 cut(s) 38, 241, 419, 467
NheI GCTAGC 1 cut(s) 751
NlaIII CATG 4 cut(s) 38, 331, 377, 728
NmuCI GTSAC 1 cut(s) 48
NspI RCATGY 1 cut(s) 331
OliI CACNNNNGTG 1 cut(s) 438
PaeI GCATGC 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 789
PdmI GAANNNNTTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 35
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 2 cut(s) 536, 691
Psp1406I AACGTT 1 cut(s) 318
PspEI GGTNACC 2 cut(s) 662, 719
PspPI GGNCC 2 cut(s) 234, 700
PsuI RGATCY 2 cut(s) 419, 467
RseI CAYNNNNRTG 1 cut(s) 438
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 3 cut(s) 203, 273, 321
SatI GCNGC 2 cut(s) 535, 690
Sau3AI GATC 4 cut(s) 38, 241, 419, 467
Sau96I GGNCC 2 cut(s) 234, 700
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 478
SetI ASST 6 cut(s) 13, 227, 269, 321, 528, 757
SfaNI GCATC 1 cut(s) 442
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 60, 756
SmoI CTYRAG 2 cut(s) 60, 756
SphI GCATGC 1 cut(s) 331
Sse9I AATT 6 cut(s) 125, 134, 247, 651, 681, 770
SspMI CTAG 2 cut(s) 471, 752
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 3 cut(s) 26, 54, 668
TaiI ACGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 41, 218
TasI AATT 6 cut(s) 125, 134, 247, 651, 681, 770
Tru1I TTAA 3 cut(s) 203, 273, 321
Tru9I TTAA 3 cut(s) 203, 273, 321
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 2 cut(s) 534, 689
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 5 cut(s) 111, 207, 294, 390, 776
TspRI CASTG 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 3 cut(s) 125, 134, 247
XceI RCATGY 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 2 cut(s) 471, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.