AT5G33390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0020215
Physical Location & Seq
Forward (+)
12661708 .. 12663496
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G33390.1

Sequence Viewer

Length: 357 bp
ATGAATCTTAACGGCGGTGGTTCTGGCTCTAGTGGTTCTGGATCTGGTGGTTCTGTCTCTGGTGGTTCTGGATCTGGTGGTTCTGGCTCTGGTGGTTCTGGATCTGGTGGTTCTGGCTCTGGTGGACGTGCTAATGGTCGTGGTAATGGTGGACGTGGTAGCGGCCGTGGTGGTGGCCGTGGAGATGGCCGTGGAGATGGTCGTGGAATTGGTGGTGGTGGCCGTGGAAGAGGAAGAATTCCGGCTGCATTTATGGGACGTGGACGTGGCCGTGGAAGGGGTAACCATGGTCAAATGTCCATTGACGCCTTGCAAGCTCAGGAAGCAAGGAGATTGATGCCTGTTCTTCATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

10.81

Weight (kDa)

12.0

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36675 AT2G10975 AT3G29637 AT3G29637 AT3G29645 AT5G33390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 15, 162
AclWI GGATC 3 cut(s) 49, 79, 109
AcoI YGGCCR 5 cut(s) 163, 175, 187, 220, 268
AcsI RAATTY 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 277
AjiI CACGTC 4 cut(s) 128, 155, 260, 266
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 3 cut(s) 49, 79, 109
AoxI GGCC 5 cut(s) 163, 175, 187, 220, 268
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 237
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 179, 191
BceAI ACGGC 6 cut(s) 28, 150, 162, 174, 207, 255
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 163, 246
BlsI GCNGC 2 cut(s) 164, 247
BmgBI CACGTC 4 cut(s) 128, 155, 260, 266
BmsI GCATC 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 6 cut(s) 166, 178, 190, 223, 271, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 277
BseDI CCNNGG 6 cut(s) 166, 178, 190, 223, 271, 286
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 332
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 5 cut(s) 165, 177, 189, 222, 270
BsiEI CGRYCG 1 cut(s) 166
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 5 cut(s) 165, 177, 189, 222, 270
Bsp143I GATC 3 cut(s) 41, 71, 101
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 2 cut(s) 15, 162
BspANI GGCC 5 cut(s) 165, 177, 189, 222, 270
BspCNI CTCAG 1 cut(s) 331
BspPI GGATC 3 cut(s) 49, 79, 109
BssECI CCNNGG 6 cut(s) 166, 178, 190, 223, 271, 286
BssMI GATC 3 cut(s) 41, 71, 101
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 6 cut(s) 166, 178, 190, 223, 271, 286
BstEII GGTNACC 1 cut(s) 281
BstKTI GATC 3 cut(s) 44, 74, 104
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 3 cut(s) 41, 71, 101
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 314, 323
BstPI GGTNACC 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 232
BstX2I RGATCY 3 cut(s) 41, 71, 101
BstYI RGATCY 3 cut(s) 41, 71, 101
BstZI CGGCCG 1 cut(s) 163
BsuRI GGCC 5 cut(s) 165, 177, 189, 222, 270
BtgI CCRYGG 6 cut(s) 166, 178, 190, 223, 271, 286
BtrI CACGTC 4 cut(s) 128, 155, 260, 266
Cac8I GCNNGC 1 cut(s) 315
CseI GACGC 1 cut(s) 314
CviAII CATG 1 cut(s) 287
DdeI CTNAG 1 cut(s) 318
DpnI GATC 3 cut(s) 43, 73, 103
DpnII GATC 3 cut(s) 41, 71, 101
EaeI YGGCCR 5 cut(s) 163, 175, 187, 220, 268
EagI CGGCCG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EclXI CGGCCG 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 163
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
EcoRI GAATTC 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 290
FaiI YATR 3 cut(s) 254, 288, 355
FaqI GGGAC 1 cut(s) 270
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 163, 246
Fsp4HI GCNGC 2 cut(s) 163, 246
FspBI CTAG 1 cut(s) 30
GluI GCNGC 2 cut(s) 163, 246
HaeIII GGCC 5 cut(s) 165, 177, 189, 222, 270
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 1 cut(s) 290
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 242
Hpy166II GTNNAC 3 cut(s) 125, 152, 263
Hpy188III TCNNGA 4 cut(s) 39, 69, 99, 320
Hpy8I GTNNAC 3 cut(s) 125, 152, 263
HpyAV CCTTC 1 cut(s) 270
HpyCH4IV ACGT 4 cut(s) 127, 154, 259, 265
HpyCH4V TGCA 2 cut(s) 248, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 323
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 4 cut(s) 127, 154, 259, 265
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 3 cut(s) 41, 71, 101
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 327
MaeI CTAG 1 cut(s) 30
MaeII ACGT 4 cut(s) 127, 154, 259, 265
MaeIII GTNAC 1 cut(s) 281
MalI GATC 3 cut(s) 43, 73, 103
MboI GATC 3 cut(s) 41, 71, 101
MboII GAAGA 3 cut(s) 240, 246, 338
MflI RGATCY 3 cut(s) 41, 71, 101
MluCI AATT 2 cut(s) 207, 237
MnlI CCTC 1 cut(s) 224
MseI TTAA 1 cut(s) 9
MspI CCGG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 314, 323
NcoI CCATGG 1 cut(s) 286
NdeII GATC 3 cut(s) 41, 71, 101
NlaIII CATG 1 cut(s) 290
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 164, 247
PspEI GGTNACC 1 cut(s) 281
PsuI RGATCY 3 cut(s) 41, 71, 101
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 2 cut(s) 163, 246
Sau3AI GATC 3 cut(s) 41, 71, 101
SetI ASST 5 cut(s) 130, 157, 262, 268, 319
SfaNI GCATC 1 cut(s) 327
Sse9I AATT 2 cut(s) 207, 237
SsiI CCGC 2 cut(s) 15, 162
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 286
TaiI ACGT 4 cut(s) 130, 157, 262, 268
TasI AATT 2 cut(s) 207, 237
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 17, 338, 342
XapI RAATTY 1 cut(s) 237
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.