AT3G29645

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
11480384 .. 11481190
807 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29645.1

Sequence Viewer

Length: 417 bp
ATGACTCTTGGAAGGATGACTGGTGTTGATGAAGACATTCCAAACAATGAAGATTCAACTTCTACTCGACGAAAAATCCCCAAATGGACAACTAAGCAAAATTTGAGTGACTCGCTGTTCATGATCAACCACGCTATAGTAGTCAGTGCTCGTCCCATGGGAGGGATGCGTCTAAAAAGAAAGTTAAAAAAAGGTAAGGGTGATGCATGCTTGGAAGTCGTTAATGAAGAGTGGAATGATTTCAAGCAATTGAAAGAGAAAGAGTTAGAAAACTTGGAAAAAAATTGCCAAGAGACAGAAGAGGCAAACAAATTGAAGAAGATGGAGATGGTTATGAAGCTATCTGAGAATGAGCATCTCAATGATTGGAGCAAAAAGCTATTAGAGAAGTTGAACCACGAACTATTTGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

16.08

Weight (kDa)

7.75

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36675 AT2G10975 AT3G29637 AT3G29637 AT3G29645 AT5G33390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 161, 162
AgsI TTSAA 5 cut(s) 57, 244, 253, 316, 394
AluBI AGCT 2 cut(s) 340, 379
AluI AGCT 2 cut(s) 340, 379
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 100
Asp700I GAANNNNTTC 2 cut(s) 36, 239
AsuHPI GGTGA 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 151
BccI CCATC 2 cut(s) 316, 322
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 135
BmsI GCATC 3 cut(s) 156, 193, 364
BpiI GAAGAC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 162
Bse1I ACTGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 21, 171
BseLI CCNNNNNNNGG 2 cut(s) 161, 162
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 151
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 2 cut(s) 161, 162
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 120
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 156
Bst6I CTCTTC 2 cut(s) 222, 294
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 93, 345
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 2 cut(s) 21, 171
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 2 cut(s) 21, 171
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 208
CciI TCATGA 1 cut(s) 120
CseI GACGC 1 cut(s) 158
CviAII CATG 3 cut(s) 121, 157, 207
CviJI RGCY 2 cut(s) 340, 379
CviKI_1 RGCY 2 cut(s) 340, 379
DdeI CTNAG 2 cut(s) 93, 345
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
Eam1104I CTCTTC 2 cut(s) 222, 294
EarI CTCTTC 2 cut(s) 222, 294
Eco130I CCWWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 124, 160, 210
FaiI YATR 5 cut(s) 122, 137, 158, 208, 335
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 120, 156, 206
FbaI TGATCA 1 cut(s) 123
FokI GGATG 2 cut(s) 28, 178
HgaI GACGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 124, 160, 210
HinfI GANTC 3 cut(s) 4, 53, 110
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 93, 345
Hsp92II CATG 3 cut(s) 124, 160, 210
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 1 cut(s) 6
LweI GCATC 3 cut(s) 156, 193, 364
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 6 cut(s) 44, 62, 239, 311, 328, 331
MfeI CAATTG 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 5 cut(s) 100, 248, 283, 311, 412
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 2 cut(s) 155, 295
Mph1103I ATGCAT 1 cut(s) 208
MroXI GAANNNNTTC 2 cut(s) 36, 239
MseI TTAA 2 cut(s) 185, 222
MslI CAYNNNNRTG 1 cut(s) 360
MunI CAATTG 1 cut(s) 248
NcoI CCATGG 1 cut(s) 156
NdeII GATC 1 cut(s) 123
NlaIII CATG 3 cut(s) 124, 160, 210
NmuCI GTSAC 1 cut(s) 107
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 1 cut(s) 210
PaeI GCATGC 1 cut(s) 210
PagI TCATGA 1 cut(s) 120
PdmI GAANNNNTTC 2 cut(s) 36, 239
PfeI GAWTC 1 cut(s) 53
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 2 cut(s) 185, 222
Sau3AI GATC 1 cut(s) 123
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 151
SetI ASST 3 cut(s) 196, 342, 381
SfaNI GCATC 3 cut(s) 156, 193, 364
SfcI CTRYAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 360
SphI GCATGC 1 cut(s) 210
Sse9I AATT 5 cut(s) 100, 248, 283, 311, 412
StyI CCWWGG 1 cut(s) 156
TaqI TCGA 1 cut(s) 67
TasI AATT 5 cut(s) 100, 248, 283, 311, 412
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 2 cut(s) 185, 222
Tru9I TTAA 2 cut(s) 185, 222
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 5 cut(s) 45, 63, 109, 240, 350
TspRI CASTG 1 cut(s) 151
XapI RAATTY 1 cut(s) 100
XceI RCATGY 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XmnI GAANNNNTTC 2 cut(s) 36, 239
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.