AT1G44414

zinc-ribbon family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017933
Physical Location & Seq
Forward (+)
16847684 .. 16848343
660 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44414.1

Sequence Viewer

Length: 306 bp
ATGTTCTTCTTCTTCGTCGGTGGATTAGGGCAACAAGTGAGACAAGTCCTAAAATCCGGCGCCGGAACATGCATAAGATGCGGTTCTCAAGCCGATTTGGTCGAGTACGACAAAGTCATAAAGCTCTTCTTCGTTCCTGTCTGGAGATGGCCTGGAAAAGATCCTCTACTTCATTGTAGAGACTGTGATCTGTTCTTCCCTCAGTCTCTGTCACCGCCTCCAGTTTCTTTAGCTACGTGTCGATTCTGTGATCGTGTTGTTGAGCCTGAGTTCCGTTTTTGCCCTTTTTGTGGCTCTTCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_15

Protein Analysis

101

Amino Acids

11.44

Weight (kDa)

8.16

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_15 PF17032 23 - 98 1.7e-23 zinc-ribbon family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44414
malus_domestica MD15G1347500.v1.1
prunus_persica Prupe.1G495300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0295891
rosa_laevigata RLG00000011759
rosa_multiflora Rmu_sc0003139.1_g000004
rosa_roxburghii Rroxscaffold_7G00172080
rosa_rugosa Rorug06G0255000
rosa_samantha Rh6AG368600 Rh6CG382500
rosa_wichuraiana Rw6G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 2 cut(s) 81, 215
AclWI GGATC 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 290
AflIII ACRYGT 1 cut(s) 236
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 2 cut(s) 124, 233
AluI AGCT 2 cut(s) 124, 233
Alw26I GTCTC 3 cut(s) 34, 174, 210
AlwI GGATC 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 204
BanI GGYRCC 1 cut(s) 59
BccI CCATC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 34, 174, 210
BfoI RGCGCY 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 68
BpmI CTGGAG 2 cut(s) 163, 204
BpuEI CTTGAG 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 215, 258
BseNI ACTGG 1 cut(s) 221
BshFI GGCC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 57, 63
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 3 cut(s) 34, 174, 210
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 3 cut(s) 160, 187, 250
BspACI CCGC 2 cut(s) 81, 215
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 214, 259
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 1 cut(s) 155
BspQI GCTCTTC 2 cut(s) 131, 301
BspT107I GGYRCC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 221
BssMI GATC 3 cut(s) 160, 187, 250
BssNI GRCGYC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 2 cut(s) 131, 301
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 201, 267
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 3 cut(s) 163, 190, 253
BstMAI GTCTC 3 cut(s) 34, 174, 210
BstMBI GATC 3 cut(s) 160, 187, 250
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 208
CfoI GCGC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 69
CviJI RGCY 6 cut(s) 92, 124, 151, 233, 265, 294
CviKI_1 RGCY 6 cut(s) 92, 124, 151, 233, 265, 294
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 2 cut(s) 201, 267
DinI GGCGCC 1 cut(s) 61
DpnI GATC 3 cut(s) 162, 189, 252
DpnII GATC 3 cut(s) 160, 187, 250
Eam1104I CTCTTC 2 cut(s) 131, 301
EarI CTCTTC 2 cut(s) 131, 301
EcoRII CCWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 74
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
FaeI CATG 1 cut(s) 72
FaiI YATR 3 cut(s) 70, 74, 119
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 1 cut(s) 68
GlaI GCGC 1 cut(s) 61
GsuI CTGGAG 2 cut(s) 163, 204
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 1 cut(s) 151
HapII CCGG 2 cut(s) 57, 63
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 72
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 1 cut(s) 243
HpaII CCGG 2 cut(s) 57, 63
HphI GGTGA 1 cut(s) 204
Hpy188III TCNNGA 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 201, 267
HpySE526I ACGT 1 cut(s) 236
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 72
HspAI GCGC 1 cut(s) 60
KasI GGCGCC 1 cut(s) 59
Kzo9I GATC 3 cut(s) 160, 187, 250
LguI GCTCTTC 2 cut(s) 131, 301
LpnPI CCDG 8 cut(s) 70, 76, 127, 138, 150, 165, 234, 279
LweI GCATC 1 cut(s) 68
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 210
MalI GATC 3 cut(s) 162, 189, 252
MboI GATC 3 cut(s) 160, 187, 250
MboII GAAGA 5 cut(s) 4, 118, 121, 187, 288
MflI RGATCY 1 cut(s) 160
Mly113I GGCGCC 1 cut(s) 60
MnlI CCTC 3 cut(s) 174, 210, 228
Mph1103I ATGCAT 1 cut(s) 74
MspI CCGG 2 cut(s) 57, 63
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 78
NarI GGCGCC 1 cut(s) 60
NdeII GATC 3 cut(s) 160, 187, 250
NlaIII CATG 1 cut(s) 72
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 210
NsiI ATGCAT 1 cut(s) 74
NspI RCATGY 1 cut(s) 72
PciSI GCTCTTC 2 cut(s) 131, 301
PfeI GAWTC 1 cut(s) 243
PflFI GACNNNGTC 1 cut(s) 113
PluTI GGCGCC 1 cut(s) 63
Ppu21I YACGTR 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 160
PsyI GACNNNGTC 1 cut(s) 113
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SapI GCTCTTC 2 cut(s) 131, 301
Sau3AI GATC 3 cut(s) 160, 187, 250
ScrFI CCNGG 1 cut(s) 153
SetI ASST 3 cut(s) 126, 235, 239
SfaNI GCATC 1 cut(s) 68
SfoI GGCGCC 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SsiI CCGC 2 cut(s) 81, 215
SspDI GGCGCC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 102, 241
TfiI GAWTC 1 cut(s) 243
TseFI GTSAC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 263
Tth111I GACNNNGTC 1 cut(s) 113
XceI RCATGY 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.