Prupe.1G495300_v2.0.a1

zinc-ribbon family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017933
Physical Location & Seq
Forward (+)
41115841 .. 41116717
877 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G495300.1

Sequence Viewer

Length: 336 bp
ATGTTCTTCTTCTTCGCTGGAGGAGTGGAGCAGCAGGTCCGGCAGGTGCTGACATCCAGTGCGGGCAGGTGCATAGTGTGCAGGTCGCCGGCGGATATGGTGGACTACGAGAAGGTACTGAAGGTCTTCTTCGTCCCCGTATGGCGGTGGCCCGGAAAGGAGCCCGTCATGCACTGTAACAATTGCAACCTCTTCTTCCCTCAGTCGTACTCTCTGCCGCCTCCGAAGACCGCCGATGACTCTGCGGCGGTCTCGGAGGCTCTGCGCTGTCGTTTCTGCGATCGGGTTGTGGAGCCGGAGTTCAGCTTCTGCCCCTTCTGTGGCTCCGCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_15

Protein Analysis

112

Amino Acids

12.54

Weight (kDa)

6.53

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44414
malus_domestica MD15G1347500.v1.1
prunus_persica Prupe.1G495300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0295891
rosa_laevigata RLG00000011759
rosa_multiflora Rmu_sc0003139.1_g000004
rosa_roxburghii Rroxscaffold_7G00172080
rosa_rugosa Rorug06G0255000
rosa_samantha Rh6AG368600 Rh6CG382500
rosa_wichuraiana Rw6G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 34, 57
Acc36I ACCTGC 4 cut(s) 25, 34, 57, 72
AciI CCGC 8 cut(s) 62, 92, 145, 218, 231, 245, 248, 327
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 117, 209
AfiI CCNNNNNNNGG 2 cut(s) 144, 320
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 256
AlwNI CAGNNNCTG 2 cut(s) 49, 309
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 125
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 2 cut(s) 37, 150
AsuC2I CCSGG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 2 cut(s) 118, 233
BbvI GCAGC 1 cut(s) 43
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 256
BfuAI ACCTGC 4 cut(s) 25, 34, 57, 72
BisI GCNGC 3 cut(s) 32, 218, 246
BlsI GCNGC 3 cut(s) 33, 219, 247
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 150
BmiI GGNNCC 3 cut(s) 162, 294, 325
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 118, 233
BpmI CTGGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 320
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 2 cut(s) 144, 320
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 283
BsiSI CCGG 4 cut(s) 40, 89, 153, 296
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 144, 320
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 151
Bso31I GGTCTC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 8 cut(s) 62, 92, 145, 218, 231, 245, 248, 327
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 162, 294, 325
BspMI ACCTGC 4 cut(s) 25, 34, 57, 72
BspTNI GGTCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 88
BssMI GATC 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 64, 90
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 280
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 3 cut(s) 40, 78, 169
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 2 cut(s) 118, 233
BsuRI GGCC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 64, 172
BveI ACCTGC 4 cut(s) 25, 34, 57, 72
Cac8I GCNNGC 2 cut(s) 64, 90
CaiI CAGNNNCTG 2 cut(s) 49, 309
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 37, 150
Csp6I GTAC 2 cut(s) 116, 208
CviAII CATG 1 cut(s) 169
CviJI RGCY 6 cut(s) 151, 163, 260, 295, 306, 324
CviKI_1 RGCY 6 cut(s) 151, 163, 260, 295, 306, 324
CviQI GTAC 2 cut(s) 116, 208
DdeI CTNAG 1 cut(s) 201
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 1 cut(s) 172
FaiI YATR 6 cut(s) 74, 98, 142, 170, 332, 334
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 168
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 3 cut(s) 32, 218, 246
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 32, 218, 246
GlaI GCGC 1 cut(s) 266
GluI GCNGC 3 cut(s) 32, 218, 246
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 151
HapII CCGG 4 cut(s) 40, 89, 153, 296
HhaI GCGC 1 cut(s) 267
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 1 cut(s) 239
HpaII CCGG 4 cut(s) 40, 89, 153, 296
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 225, 256
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 3 cut(s) 106, 115, 325
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 4 cut(s) 72, 81, 172, 186
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 78, 169
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 265
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 4 cut(s) 28, 160, 292, 329
Lsp1109I GCAGC 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 176
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 6 cut(s) 4, 118, 121, 184, 187, 238
MfeI CAATTG 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 181
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 5 cut(s) 14, 200, 210, 231, 250
MreI CGCCGGCG 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 125
MspI CCGG 4 cut(s) 40, 89, 153, 296
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 40, 78, 169
NaeI GCCGGC 1 cut(s) 90
NciI CCSGG 1 cut(s) 153
NdeII GATC 1 cut(s) 280
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 3 cut(s) 162, 294, 325
PaqCI CACCTGC 2 cut(s) 34, 57
PdiI GCCGGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 125
PkrI GCNGC 3 cut(s) 33, 219, 247
Ple19I CGATCG 1 cut(s) 283
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PspN4I GGNNCC 3 cut(s) 162, 294, 325
PspPI GGNCC 2 cut(s) 37, 150
PstNI CAGNNNCTG 2 cut(s) 49, 309
PvuI CGATCG 1 cut(s) 283
RsaI GTAC 2 cut(s) 117, 209
RsaNI GTAC 2 cut(s) 116, 208
SatI GCNGC 3 cut(s) 32, 218, 246
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 2 cut(s) 37, 150
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 165
SetI ASST 8 cut(s) 39, 48, 71, 86, 117, 126, 192, 308
SgrAI CRCCGGYG 1 cut(s) 88
SinI GGWCC 1 cut(s) 37
Sse9I AATT 1 cut(s) 181
SsiI CCGC 8 cut(s) 62, 92, 145, 218, 231, 245, 248, 327
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 176
TasI AATT 1 cut(s) 181
TauI GCSGC 2 cut(s) 220, 248
TscAI CASTG 2 cut(s) 64, 179
TseI GCWGC 1 cut(s) 31
TspRI CASTG 2 cut(s) 64, 179
VpaK11BI GGWCC 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.