MD15G1347500.v1.1

zinc-ribbon family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017933
Physical Location & Seq
Forward (+)
41167115 .. 41167450
336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1347500.v1.1.491

Sequence Viewer

Length: 336 bp
ATGTTCTTCTTCTTCGCCGGAGGAGTCCAGCAGCAGGTGCGGGAGGTACTGAAATCCGGCGCGGGCAGGTGCATAGCGTGCAGGTCGCCGGCGGATCTGGTGGAGTACGAGAAGGTTCTGAAGCTCTTCTTCGTCCCCGTGTGGCGTTGGCCGGGGAAAGAGCCTGTCATGCACTGCAACAATTGCAACCTCTTCTTTCCTGAGTCCTACTCTCTCCCGCCTCCGAAGACCACCGTGGACTCTGCGGCGGTCTCGGAGGCTCTGCGGTGCCGATTTTGCGATCGGGTTGTGGAGCCCGAGTTCAGCTTCTGCCCCTTCTGTGGCGCTGCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_15

Protein Analysis

112

Amino Acids

12.53

Weight (kDa)

7.51

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_15 PF17032 23 - 108 5.4e-23 zinc-ribbon family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44414
malus_domestica MD15G1347500.v1.1
prunus_persica Prupe.1G495300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0295891
rosa_laevigata RLG00000011759
rosa_multiflora Rmu_sc0003139.1_g000004
rosa_roxburghii Rroxscaffold_7G00172080
rosa_rugosa Rorug06G0255000
rosa_samantha Rh6AG368600 Rh6CG382500
rosa_wichuraiana Rw6G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 25, 57
Acc36I ACCTGC 3 cut(s) 25, 57, 72
AccB1I GGYRCC 1 cut(s) 267
AccII CGCG 1 cut(s) 62
AciI CCGC 7 cut(s) 40, 62, 92, 218, 245, 248, 265
AclWI GGATC 1 cut(s) 102
AcoI YGGCCR 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 48, 107
AfiI CCNNNNNNNGG 2 cut(s) 34, 320
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AluBI AGCT 2 cut(s) 124, 306
AluI AGCT 2 cut(s) 124, 306
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 102
AlwNI CAGNNNCTG 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 2 cut(s) 31, 326
Asp700I GAANNNNTTC 1 cut(s) 125
AspLEI GCGC 2 cut(s) 62, 326
AsuC2I CCSGG 1 cut(s) 153
AvaI CYCGRG 1 cut(s) 296
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 43, 313
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 256
BfoI RGCGCY 1 cut(s) 327
BfuAI ACCTGC 3 cut(s) 25, 57, 72
BisI GCNGC 3 cut(s) 32, 246, 327
BlsI GCNGC 3 cut(s) 33, 247, 328
Bme1390I CCNGG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 269, 294
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpuMI CCSGG 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 152, 234
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 320
Bse118I RCCGGY 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 152, 234
BseLI CCNNNNNNNGG 2 cut(s) 34, 320
BseMII CTCAG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 43, 313
BsgI GTGCAG 2 cut(s) 100, 312
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 4 cut(s) 18, 57, 89, 152
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 34, 320
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 151
Bso31I GGTCTC 1 cut(s) 256
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 94, 280
BspACI CCGC 7 cut(s) 40, 62, 92, 218, 245, 248, 265
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 269, 294
BspMI ACCTGC 3 cut(s) 25, 57, 72
BspPI GGATC 1 cut(s) 102
BspQI GCTCTTC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 152, 234
BssMI GATC 2 cut(s) 94, 280
Bst4CI ACNGT 2 cut(s) 235, 333
Bst6I CTCTTC 2 cut(s) 131, 197
BstAPI GCANNNNNTGC 3 cut(s) 37, 78, 183
BstC8I GCNNGC 3 cut(s) 64, 79, 90
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 234
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 2 cut(s) 62, 326
BstKTI GATC 2 cut(s) 97, 283
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 94, 280
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 5 cut(s) 37, 78, 169, 183, 276
BstSCI CCNGG 1 cut(s) 151
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 43, 313
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
BveI ACCTGC 3 cut(s) 25, 57, 72
Cac8I GCNNGC 3 cut(s) 64, 79, 90
CaiI CAGNNNCTG 1 cut(s) 309
CfoI GCGC 2 cut(s) 62, 326
Cfr10I RCCGGY 1 cut(s) 88
Csp6I GTAC 2 cut(s) 47, 106
CviAII CATG 1 cut(s) 169
CviJI RGCY 6 cut(s) 124, 151, 163, 260, 295, 306
CviKI_1 RGCY 6 cut(s) 124, 151, 163, 260, 295, 306
CviQI GTAC 2 cut(s) 47, 106
DdeI CTNAG 1 cut(s) 201
DpnI GATC 2 cut(s) 96, 282
DpnII GATC 2 cut(s) 94, 280
EaeI YGGCCR 1 cut(s) 149
Eam1104I CTCTTC 2 cut(s) 131, 197
EarI CTCTTC 2 cut(s) 131, 197
EciI GGCGGA 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 297
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 74, 170
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 168
FauI CCCGC 3 cut(s) 33, 55, 225
Fnu4HI GCNGC 3 cut(s) 32, 246, 327
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 3 cut(s) 32, 246, 327
GlaI GCGC 2 cut(s) 61, 325
GluI GCNGC 3 cut(s) 32, 246, 327
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 1 cut(s) 151
HapII CCGG 4 cut(s) 18, 57, 89, 152
HhaI GCGC 2 cut(s) 62, 326
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 2 cut(s) 60, 324
HinP1I GCGC 2 cut(s) 60, 324
HinfI GANTC 3 cut(s) 24, 203, 239
HpaII CCGG 4 cut(s) 18, 57, 89, 152
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 120, 225, 256
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 106, 325
HpyCH4III ACNGT 2 cut(s) 235, 333
HpyCH4V TGCA 6 cut(s) 72, 81, 172, 177, 186, 329
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 78, 169, 183, 276
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 2 cut(s) 60, 324
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 2 cut(s) 94, 280
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 43, 313
MalI GATC 2 cut(s) 96, 282
MboI GATC 2 cut(s) 94, 280
MboII GAAGA 5 cut(s) 4, 118, 121, 184, 238
MfeI CAATTG 1 cut(s) 181
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 1 cut(s) 181
MlyI GAGTC 3 cut(s) 33, 212, 233
MnlI CCTC 5 cut(s) 14, 37, 200, 231, 250
MreI CGCCGGCG 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 125
MspI CCGG 4 cut(s) 18, 57, 89, 152
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 181
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 5 cut(s) 37, 78, 169, 183, 276
NaeI GCCGGC 1 cut(s) 90
NciI CCSGG 1 cut(s) 153
NdeII GATC 2 cut(s) 94, 280
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 269, 294
PaqCI CACCTGC 2 cut(s) 25, 57
PciSI GCTCTTC 1 cut(s) 131
PdiI GCCGGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 125
PkrI GCNGC 3 cut(s) 33, 247, 328
Ple19I CGATCG 1 cut(s) 283
PleI GAGTC 3 cut(s) 32, 211, 233
PpsI GAGTC 3 cut(s) 32, 211, 233
PspN4I GGNNCC 2 cut(s) 269, 294
PstNI CAGNNNCTG 1 cut(s) 309
PsuI RGATCY 1 cut(s) 94
PvuI CGATCG 1 cut(s) 283
RsaI GTAC 2 cut(s) 48, 107
RsaNI GTAC 2 cut(s) 47, 106
SapI GCTCTTC 1 cut(s) 131
SatI GCNGC 3 cut(s) 32, 246, 327
Sau3AI GATC 2 cut(s) 94, 280
SchI GAGTC 3 cut(s) 33, 212, 233
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 297
SetI ASST 8 cut(s) 39, 48, 71, 86, 117, 126, 192, 308
SgrAI CRCCGGYG 1 cut(s) 88
Sse9I AATT 1 cut(s) 181
SsiI CCGC 7 cut(s) 40, 62, 92, 218, 245, 248, 265
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 235, 333
TasI AATT 1 cut(s) 181
TauI GCSGC 1 cut(s) 248
TscAI CASTG 1 cut(s) 179
TseI GCWGC 2 cut(s) 31, 326
TspRI CASTG 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.