Rmu_sc0003139.1_g000004

zinc-ribbon family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003139.1
OG0017933
Physical Location & Seq
Reverse (-)
15980 .. 16306
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003139.1_g000004.1.cds

Sequence Viewer

Length: 327 bp
atgttcttcttctttgctggagggttagagcagcaagtccggcaggtgctgcaatccggtgcgggcaggtgcatagtgtgcaggtcgccggcggatttggtggaatacgagaaggtgctgaagctcttcttcgtccccgtgtggcggtggcccgggaaagagcctctgatgcactgcaacaactgcaagctcttctttcctcagagctattctctcccgcctcccagggatgattccacggcggaggagctgctgcggtgtcgtttttgtgatcggagggtggagtctgagttcagcttctgcccatattgtggctcagctctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_15

Protein Analysis

108

Amino Acids

12.52

Weight (kDa)

7.51

Isoelectric Point (pI)

71.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44414
malus_domestica MD15G1347500.v1.1
prunus_persica Prupe.1G495300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0295891
rosa_laevigata RLG00000011759
rosa_multiflora Rmu_sc0003139.1_g000004
rosa_roxburghii Rroxscaffold_7G00172080
rosa_rugosa Rorug06G0255000
rosa_samantha Rh6AG368600 Rh6CG382500
rosa_wichuraiana Rw6G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 34, 57
Acc36I ACCTGC 3 cut(s) 34, 57, 72
AccB7I CCANNNNNTGG 1 cut(s) 311
AciI CCGC 6 cut(s) 62, 92, 145, 218, 242, 256
AcuI CTGAAG 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 144, 311
AjnI CCWGG 1 cut(s) 224
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
AluBI AGCT 6 cut(s) 124, 190, 207, 250, 297, 320
AluI AGCT 6 cut(s) 124, 190, 207, 250, 297, 320
AlwNI CAGNNNCTG 2 cut(s) 49, 300
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 4 cut(s) 31, 49, 250, 253
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 2 cut(s) 153, 154
AvaI CYCGRG 1 cut(s) 152
BbvI GCAGC 4 cut(s) 36, 43, 237, 240
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 2 cut(s) 153, 154
BfuAI ACCTGC 3 cut(s) 34, 57, 72
BisI GCNGC 4 cut(s) 32, 50, 251, 254
BlpI GCTNAGC 1 cut(s) 316
BlsI GCNGC 4 cut(s) 33, 51, 252, 255
Bme1390I CCNGG 3 cut(s) 153, 154, 226
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 3 cut(s) 153, 154, 226
BmsI GCATC 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 316
BpuMI CCSGG 2 cut(s) 153, 154
BsaJI CCNNGG 4 cut(s) 152, 224, 225, 237
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 311
Bse118I RCCGGY 1 cut(s) 88
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 4 cut(s) 152, 224, 225, 237
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 144, 311
BseMII CTCAG 2 cut(s) 215, 279
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 4 cut(s) 36, 43, 237, 240
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 4 cut(s) 40, 57, 89, 153
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 144, 311
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 152
Bsp143I GATC 1 cut(s) 271
Bsp1720I GCTNAGC 1 cut(s) 316
BspACI CCGC 6 cut(s) 62, 92, 145, 218, 242, 256
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 214, 280
BspMI ACCTGC 3 cut(s) 34, 57, 72
BspQI GCTCTTC 2 cut(s) 131, 197
BsrFI RCCGGY 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 4 cut(s) 152, 224, 225, 237
BssMI GATC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 131, 197
BstAPI GCANNNNNTGC 3 cut(s) 49, 78, 183
BstC8I GCNNGC 3 cut(s) 64, 90, 188
BstDEI CTNAG 3 cut(s) 201, 288, 316
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 5 cut(s) 40, 49, 78, 169, 183
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 3 cut(s) 151, 152, 224
BstV1I GCAGC 4 cut(s) 36, 43, 237, 240
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
BveI ACCTGC 3 cut(s) 34, 57, 72
Cac8I GCNNGC 3 cut(s) 64, 90, 188
CaiI CAGNNNCTG 2 cut(s) 49, 300
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 150
Cfr9I CCCGGG 1 cut(s) 152
CviJI RGCY 9 cut(s) 124, 151, 163, 190, 207, 250, 297, 315, 320
CviKI_1 RGCY 9 cut(s) 124, 151, 163, 190, 207, 250, 297, 315, 320
DdeI CTNAG 3 cut(s) 201, 288, 316
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 131, 197
EarI CTCTTC 2 cut(s) 131, 197
EciI GGCGGA 2 cut(s) 107, 257
Eco57I CTGAAG 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 224
FaiI YATR 2 cut(s) 74, 307
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 179, 211
FaqI GGGAC 1 cut(s) 119
FauI CCCGC 2 cut(s) 55, 225
Fnu4HI GCNGC 4 cut(s) 32, 50, 251, 254
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 4 cut(s) 32, 50, 251, 254
GluI GCNGC 4 cut(s) 32, 50, 251, 254
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 151
HapII CCGG 4 cut(s) 40, 57, 89, 153
HinfI GANTC 2 cut(s) 233, 284
HpaII CCGG 4 cut(s) 40, 57, 89, 153
Hpy188I TCNGA 4 cut(s) 168, 204, 276, 289
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 6 cut(s) 52, 72, 81, 172, 177, 186
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 49, 78, 169, 183
HpyF3I CTNAG 3 cut(s) 201, 288, 316
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 271
LguI GCTCTTC 2 cut(s) 131, 197
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 4 cut(s) 36, 43, 237, 240
LweI GCATC 1 cut(s) 159
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 3 cut(s) 118, 121, 184
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 6 cut(s) 14, 174, 210, 231, 238, 270
MreI CGCCGGCG 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 125
MspI CCGG 4 cut(s) 40, 57, 89, 153
MspR9I CCNGG 3 cut(s) 153, 154, 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 5 cut(s) 40, 49, 78, 169, 183
NaeI GCCGGC 1 cut(s) 90
NciI CCSGG 2 cut(s) 153, 154
NdeII GATC 1 cut(s) 271
NgoMIV GCCGGC 1 cut(s) 88
PaqCI CACCTGC 2 cut(s) 34, 57
PasI CCCWGGG 1 cut(s) 225
PciSI GCTCTTC 2 cut(s) 131, 197
PdiI GCCGGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 4 cut(s) 33, 51, 252, 255
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspPI GGNCC 1 cut(s) 150
PstNI CAGNNNCTG 2 cut(s) 49, 300
SapI GCTCTTC 2 cut(s) 131, 197
SatI GCNGC 4 cut(s) 32, 50, 251, 254
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 3 cut(s) 153, 154, 226
SfaNI GCATC 1 cut(s) 159
SgrAI CRCCGGYG 1 cut(s) 88
SmaI CCCGGG 1 cut(s) 154
SsiI CCGC 6 cut(s) 62, 92, 145, 218, 242, 256
StyD4I CCNGG 3 cut(s) 151, 152, 224
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 1 cut(s) 179
TseI GCWGC 4 cut(s) 31, 49, 250, 253
TspMI CCCGGG 1 cut(s) 152
TspRI CASTG 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 311
XmaI CCCGGG 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.