RLG00000011759

zinc-ribbon family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017933
Physical Location & Seq
Forward (+)
12407993 .. 12408752
760 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011759

Sequence Viewer

Length: 381 bp
ATGTTCTTCTTCTTTGCTGGAGGGTTAGAGCAGCAAGTCCGGCAGGTGCTGCAATCCGGTGCGGGCAGGTGCATAGTGTGCAGGTCGCCGGCGGATTTGGTGGAATACGAGAAGGTGCTGAAACTCTTCTTCGTCCCCGTGTGGCGGTGGCCGGGAAAAGAGCCTCTGATGCACTGCAACAACTGCAAGCTCTTCTTTTCTCAGAGCTATTCTCTCCCGCCTCCCAGGGATGATTCCACGGCGGAGGAGCTGCTGCGGTGTCGTTTTTGTGATCGGAGGGTGGAGTCTGAGTTCAGCTTCTGCCCATATTGTGGCTCCGCTCTATACCATTTCCTTCTCTCTGATCAATTAACAGTTGCCGCCGAGTCGCTGTGGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_15

Protein Analysis

127

Amino Acids

14.6

Weight (kDa)

5.68

Isoelectric Point (pI)

64.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_15 PF17032 23 - 105 4.9e-22 zinc-ribbon family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44414
malus_domestica MD15G1347500.v1.1
prunus_persica Prupe.1G495300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0295891
rosa_laevigata RLG00000011759
rosa_multiflora Rmu_sc0003139.1_g000004
rosa_roxburghii Rroxscaffold_7G00172080
rosa_rugosa Rorug06G0255000
rosa_samantha Rh6AG368600 Rh6CG382500
rosa_wichuraiana Rw6G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 34, 57
Acc36I ACCTGC 3 cut(s) 34, 57, 72
AccB7I CCANNNNNTGG 1 cut(s) 311
AccBSI CCGCTC 1 cut(s) 320
AciI CCGC 8 cut(s) 62, 92, 145, 218, 242, 256, 318, 360
AcoI YGGCCR 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 144, 311
AjnI CCWGG 1 cut(s) 224
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
AluBI AGCT 4 cut(s) 190, 207, 250, 297
AluI AGCT 4 cut(s) 190, 207, 250, 297
AlwNI CAGNNNCTG 2 cut(s) 49, 300
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 4 cut(s) 31, 49, 250, 253
Asp700I GAANNNNTTC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 153
BbvI GCAGC 4 cut(s) 36, 43, 237, 240
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 226
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 379
BfuAI ACCTGC 3 cut(s) 34, 57, 72
BisI GCNGC 5 cut(s) 32, 50, 251, 254, 360
BlsI GCNGC 5 cut(s) 33, 51, 252, 255, 361
Bme1390I CCNGG 2 cut(s) 153, 226
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 2 cut(s) 153, 226
BmsI GCATC 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpmI CTGGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 224, 225, 237
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 311
Bse118I RCCGGY 1 cut(s) 88
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 3 cut(s) 224, 225, 237
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 144, 311
BseMII CTCAG 2 cut(s) 215, 279
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 4 cut(s) 36, 43, 237, 240
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 1 cut(s) 151
BsiSI CCGG 4 cut(s) 40, 57, 89, 152
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 144, 311
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 271, 343
BspACI CCGC 8 cut(s) 62, 92, 145, 218, 242, 256, 318, 360
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 214, 280
BspLI GGNNCC 1 cut(s) 316
BspMI ACCTGC 3 cut(s) 34, 57, 72
BspQI GCTCTTC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 224, 225, 237
BssMI GATC 2 cut(s) 271, 343
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 2 cut(s) 131, 197
BstAPI GCANNNNNTGC 3 cut(s) 49, 78, 183
BstC8I GCNNGC 3 cut(s) 64, 90, 188
BstDEI CTNAG 2 cut(s) 201, 288
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 2 cut(s) 274, 346
BstMBI GATC 2 cut(s) 271, 343
BstMWI GCNNNNNNNGC 5 cut(s) 40, 49, 78, 169, 183
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 151, 224
BstV1I GCAGC 4 cut(s) 36, 43, 237, 240
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
BveI ACCTGC 3 cut(s) 34, 57, 72
Cac8I GCNNGC 3 cut(s) 64, 90, 188
CaiI CAGNNNCTG 2 cut(s) 49, 300
Cfr10I RCCGGY 1 cut(s) 88
CviJI RGCY 7 cut(s) 151, 163, 190, 207, 250, 297, 315
CviKI_1 RGCY 7 cut(s) 151, 163, 190, 207, 250, 297, 315
DdeI CTNAG 2 cut(s) 201, 288
DpnI GATC 2 cut(s) 273, 345
DpnII GATC 2 cut(s) 271, 343
EaeI YGGCCR 1 cut(s) 149
Eam1104I CTCTTC 2 cut(s) 131, 197
EarI CTCTTC 2 cut(s) 131, 197
EciI GGCGGA 2 cut(s) 107, 257
EcoRII CCWGG 1 cut(s) 224
FaiI YATR 3 cut(s) 74, 307, 325
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 1 cut(s) 119
FauI CCCGC 2 cut(s) 55, 225
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 5 cut(s) 32, 50, 251, 254, 360
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 5 cut(s) 32, 50, 251, 254, 360
FspBI CTAG 1 cut(s) 379
GluI GCNGC 5 cut(s) 32, 50, 251, 254, 360
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 151
HapII CCGG 4 cut(s) 40, 57, 89, 152
HinfI GANTC 3 cut(s) 233, 284, 365
HpaII CCGG 4 cut(s) 40, 57, 89, 152
Hpy188I TCNGA 5 cut(s) 168, 204, 276, 289, 343
HpyAV CCTTC 2 cut(s) 106, 344
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 6 cut(s) 52, 72, 81, 172, 177, 186
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 49, 78, 169, 183
HpyF3I CTNAG 2 cut(s) 201, 288
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 271, 343
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 247, 320
Lsp1109I GCAGC 4 cut(s) 36, 43, 237, 240
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 379
MalI GATC 2 cut(s) 273, 345
MbiI CCGCTC 1 cut(s) 320
MboI GATC 2 cut(s) 271, 343
MboII GAAGA 3 cut(s) 118, 121, 184
MluCI AATT 1 cut(s) 347
MlyI GAGTC 2 cut(s) 293, 374
MnlI CCTC 5 cut(s) 14, 174, 231, 238, 270
MreI CGCCGGCG 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 1 cut(s) 350
MspI CCGG 4 cut(s) 40, 57, 89, 152
MspR9I CCNGG 2 cut(s) 153, 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 5 cut(s) 40, 49, 78, 169, 183
NaeI GCCGGC 1 cut(s) 90
NciI CCSGG 1 cut(s) 153
NdeII GATC 2 cut(s) 271, 343
NgoMIV GCCGGC 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 316
PaqCI CACCTGC 2 cut(s) 34, 57
PasI CCCWGGG 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 5 cut(s) 33, 51, 252, 255, 361
PleI GAGTC 2 cut(s) 292, 373
PpsI GAGTC 2 cut(s) 292, 373
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 316
PstNI CAGNNNCTG 2 cut(s) 49, 300
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 5 cut(s) 32, 50, 251, 254, 360
Sau3AI GATC 2 cut(s) 271, 343
SchI GAGTC 2 cut(s) 293, 374
ScrFI CCNGG 2 cut(s) 153, 226
SetI ASST 8 cut(s) 48, 71, 86, 117, 192, 209, 252, 299
SfaNI GCATC 1 cut(s) 159
SgrAI CRCCGGYG 1 cut(s) 88
Sse9I AATT 1 cut(s) 347
SsiI CCGC 8 cut(s) 62, 92, 145, 218, 242, 256, 318, 360
SspMI CTAG 1 cut(s) 379
StyD4I CCNGG 2 cut(s) 151, 224
TaaI ACNGT 1 cut(s) 355
TasI AATT 1 cut(s) 347
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 179
TseI GCWGC 4 cut(s) 31, 49, 250, 253
TspRI CASTG 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.