AT1G44960

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014570
Physical Location & Seq
Forward (+)
16999446 .. 17001734
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44960.1

Sequence Viewer

Length: 786 bp
ATGAAGAAATGGTTAGCAATCGCAGCGACGGTGGCGATAATTGCAATAATCGTTAGACAAGGCACGACACAATACGGATGGAACAAAGAGGCGGCGTTGGAAAAGCTAAAGGAATGGTCAGATCGGCTGGGGATTTGGGCGATTCCAACGTATGTAGCGGTTCACACAATAACCTTAGCTCTTTGTCTCCCTCACGCCGTCTTCTTTGAAGCTGGTGCTTCTATGCTCTTTGGTTTCCTTCCTGCTCTTCTCTGTGTTTTCTCTGCTAAAGTTCTCGCCGCTTCTTTCTCCTTCTGGATCGGCAGGTTTGTTTTTAAGAGTTCCACCAGAGCTACAGGGTGGGCGCATAGCAACAAGTACTTCAATATTCTCTCAAGAGGAGTTGAGCGCGATGGTTGGAAGTTTGTTCTTCTTGCAAGGTTCTCGCCCATTCCTTCCTATGTCATAAACTACGCTTTGGCAGCTACTGAAGTCCGGTTTGTAGCTGATTTTCTGTTCCCCACGGTTATTGGCTGCCTCCCGATGATCCTGCAGAACGCATCAGTCGGTAGCCTCGCTGGTATGGCTGTGGCTTCAGTAGCTGGAAAACAGAAAAGTCAGGTCTGGGGTTATGTTTTCCCAGTACTTGGGATACTGTCAAGTGTTCTGATTTCATTGAGGATCAAAAAGTACTCAGCTGGAATTACAGAGGCATCATCAGATACCTCTGCTAACAACTCTAGTTTAGCTTCATCTGAAACTGCGAATCCCGCTTATGGAACCGATGGATCCAAGAAAAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

261

Amino Acids

28.22

Weight (kDa)

9.6

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 63 - 184 3.7e-24 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44960
fragaria_vesca FvH4_4g22120
malus_domestica MD13G1134400.v1.1 MD16G1145000.v1.1
prunus_persica Prupe.1G211100_v2.0.a1
pyrus_communis pycom13g11720 pycom16g11460
rosa_chinensis RchiOBHm_Chr4g0428371
rosa_laevigata RLG00000007157
rosa_multiflora Rmu_sc0004698.1_g000011
rosa_roxburghii Rroxscaffold_5G00370030
rosa_rugosa Rorug04G0225100
rosa_samantha Rh4AG282100 Rh4BG287700 Rh4CG303400 Rh4DG284700
rosa_wichuraiana Rw4G024480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 294
AccB7I CCANNNNNTGG 1 cut(s) 626
AccII CGCG 1 cut(s) 390
AciI CCGC 4 cut(s) 92, 158, 279, 750
AclWI GGATC 5 cut(s) 305, 520, 668, 762, 775
AcuI CTGAAG 2 cut(s) 489, 558
AfaI GTAC 3 cut(s) 359, 624, 671
AfiI CCNNNNNNNGG 2 cut(s) 626, 755
AgsI TTSAA 2 cut(s) 209, 364
AluBI AGCT 9 cut(s) 106, 179, 212, 332, 464, 485, 581, 677, 728
AluI AGCT 9 cut(s) 106, 179, 212, 332, 464, 485, 581, 677, 728
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 5 cut(s) 305, 520, 668, 762, 775
AlwNI CAGNNNCTG 2 cut(s) 467, 581
ApeKI GCWGC 3 cut(s) 23, 461, 513
AspLEI GCGC 2 cut(s) 346, 390
BamHI GGATCC 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 193
BbvI GCAGC 3 cut(s) 35, 473, 500
BccI CCATC 3 cut(s) 72, 386, 758
BceAI ACGGC 1 cut(s) 182
BcgI CGANNNNNNTGC 4 cut(s) 405, 439, 511, 545
BciVI GTATCC 1 cut(s) 624
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 2 cut(s) 333, 530
BfuAI ACCTGC 1 cut(s) 294
BfuI GTATCC 1 cut(s) 624
BisI GCNGC 5 cut(s) 24, 93, 279, 462, 514
BlsI GCNGC 5 cut(s) 25, 94, 280, 463, 515
BmcAI AGTACT 3 cut(s) 359, 624, 671
BmiI GGNNCC 2 cut(s) 760, 769
BmrI ACTGGG 1 cut(s) 614
BmsI GCATC 2 cut(s) 548, 701
BmuI ACTGGG 1 cut(s) 614
BpiI GAAGAC 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 358
BsaJI CCNNGG 1 cut(s) 501
BsaWI WCCGGW 1 cut(s) 474
Bsc4I CCNNNNNNNGG 2 cut(s) 626, 755
Bse1I ACTGG 1 cut(s) 620
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 626, 755
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 1 cut(s) 620
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 3 cut(s) 35, 473, 500
BseYI CCCAGC 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 390
BsiSI CCGG 1 cut(s) 475
BslI CCNNNNNNNGG 2 cut(s) 626, 755
BsmAI GTCTC 1 cut(s) 191
Bsp143I GATC 5 cut(s) 121, 297, 525, 660, 767
BspACI CCGC 4 cut(s) 92, 158, 279, 750
BspCNI CTCAG 1 cut(s) 686
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 760, 769
BspMAI CTGCAG 1 cut(s) 534
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 5 cut(s) 305, 520, 668, 762, 775
BspQI GCTCTTC 1 cut(s) 252
BsrI ACTGG 1 cut(s) 620
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 5 cut(s) 121, 297, 525, 660, 767
Bst4CI ACNGT 3 cut(s) 31, 505, 636
Bst6I CTCTTC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 175, 673
BstDSI CCRYGG 1 cut(s) 501
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 1 cut(s) 390
BstHHI GCGC 2 cut(s) 346, 390
BstKTI GATC 5 cut(s) 124, 300, 528, 663, 770
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 5 cut(s) 121, 297, 525, 660, 767
BstMWI GCNNNNNNNGC 7 cut(s) 23, 32, 41, 461, 563, 578, 749
BstSFI CTRYAG 2 cut(s) 333, 530
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 35, 473, 500
BstV2I GAAGAC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 767
BstYI RGATCY 1 cut(s) 767
BsuI GTATCC 1 cut(s) 624
BtgI CCRYGG 1 cut(s) 501
BtgZI GCGATG 1 cut(s) 405
BtsCI GGATG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 294
CaiI CAGNNNCTG 2 cut(s) 467, 581
CfoI GCGC 2 cut(s) 346, 390
Csp6I GTAC 3 cut(s) 358, 623, 670
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CviQI GTAC 3 cut(s) 358, 623, 670
DdeI CTNAG 2 cut(s) 175, 673
DpnI GATC 5 cut(s) 123, 299, 527, 662, 769
DpnII GATC 5 cut(s) 121, 297, 525, 660, 767
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco57I CTGAAG 2 cut(s) 489, 558
FaiI YATR 8 cut(s) 153, 224, 348, 441, 446, 563, 612, 756
FauI CCCGC 1 cut(s) 757
Fnu4HI GCNGC 5 cut(s) 24, 93, 279, 462, 514
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 5 cut(s) 24, 93, 279, 462, 514
FspBI CTAG 1 cut(s) 720
GlaI GCGC 2 cut(s) 345, 389
GluI GCNGC 5 cut(s) 24, 93, 279, 462, 514
GsaI CCCAGC 1 cut(s) 131
HapII CCGG 1 cut(s) 475
HhaI GCGC 2 cut(s) 346, 390
Hin6I GCGC 2 cut(s) 344, 388
HinP1I GCGC 2 cut(s) 344, 388
HinfI GANTC 2 cut(s) 142, 745
HpaII CCGG 1 cut(s) 475
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 4 cut(s) 121, 648, 700, 736
Hpy188III TCNNGA 3 cut(s) 295, 375, 520
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 3 cut(s) 248, 301, 444
HpyCH4III ACNGT 3 cut(s) 31, 505, 636
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 44, 416, 532
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 32, 41, 461, 563, 578, 749
HpyF3I CTNAG 2 cut(s) 175, 673
HpySE526I ACGT 1 cut(s) 149
HspAI GCGC 2 cut(s) 344, 388
Kzo9I GATC 5 cut(s) 121, 297, 525, 660, 767
LguI GCTCTTC 1 cut(s) 252
Lsp1109I GCAGC 3 cut(s) 35, 473, 500
LweI GCATC 2 cut(s) 548, 701
MaeI CTAG 1 cut(s) 720
MaeII ACGT 1 cut(s) 149
MalI GATC 5 cut(s) 123, 299, 527, 662, 769
MboI GATC 5 cut(s) 121, 297, 525, 660, 767
MboII GAAGA 4 cut(s) 16, 193, 239, 401
MflI RGATCY 1 cut(s) 767
MluCI AATT 2 cut(s) 39, 681
MmeI TCCRAC 3 cut(s) 78, 170, 377
MnlI CCTC 8 cut(s) 82, 201, 371, 527, 563, 651, 682, 715
MseI TTAA 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 1 cut(s) 475
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 7 cut(s) 23, 32, 41, 461, 563, 578, 749
NdeII GATC 5 cut(s) 121, 297, 525, 660, 767
NlaIV GGNNCC 2 cut(s) 760, 769
PciSI GCTCTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 142, 745
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 5 cut(s) 25, 94, 280, 463, 515
PspFI CCCAGC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 760, 769
PstI CTGCAG 1 cut(s) 534
PstNI CAGNNNCTG 2 cut(s) 467, 581
PsuI RGATCY 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 3 cut(s) 359, 624, 671
RsaNI GTAC 3 cut(s) 358, 623, 670
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 5 cut(s) 24, 93, 279, 462, 514
Sau3AI GATC 5 cut(s) 121, 297, 525, 660, 767
ScaI AGTACT 3 cut(s) 359, 624, 671
SfaNI GCATC 2 cut(s) 548, 701
SfcI CTRYAG 2 cut(s) 333, 530
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 2 cut(s) 39, 681
SsiI CCGC 4 cut(s) 92, 158, 279, 750
SspI AATATT 1 cut(s) 367
SspMI CTAG 1 cut(s) 720
TaaI ACNGT 3 cut(s) 31, 505, 636
TaiI ACGT 1 cut(s) 152
TasI AATT 2 cut(s) 39, 681
TatI WGTACW 3 cut(s) 357, 622, 669
TauI GCSGC 2 cut(s) 95, 281
TfiI GAWTC 2 cut(s) 142, 745
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 3 cut(s) 23, 461, 513
TspDTI ATGAA 3 cut(s) 17, 642, 720
TspGWI ACGGA 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 626
XspI CTAG 1 cut(s) 720
ZrmI AGTACT 3 cut(s) 359, 624, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.