Prupe.1G211100_v2.0.a1

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014570
Physical Location & Seq
Reverse (-)
22458877 .. 22460813
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G211100.1

Sequence Viewer

Length: 774 bp
ATGGGGAAGAGATGGTGGACGATAGGATTGGTGGTGGGGATAATTGGGATTGGAAGGGAATTGACAAAGCTGTACGGATGGGACAAGGACGCTCTGCTGAAGGTGTTTGGTGAATTGTCTGATCGGCTGGGAGTATGGGCCATCCCGTTGTACGTGGCGATCCACACCCTCACTCTCGCTCTCTGCTTGCCCTACGCCATTTTCTTCGAGGCCGCCGCTTCTCTTCTCTTCGGCTTCTTCCCGGCTGTCCTCTGCGTCTTTGCCGCCAAGCTGCTCGGTGCTTCCCTCTCCTTTTGGATTGGCAGGTTAATATTCAAGAGCTCAAGTTCAGCAATGGAGTGGGTCCAGAGGAATAGGTACTTCGCTGTCCTCTCCAGAGGAGTTGAGCGAGATGGTTGGAGATTTGTTCTACTTGCCCGCTTCTCGCCAATGCCCTCCTATATCATAAATTATGCCCTTGCTGCAACAAGAGTTCGGTTTGTTGTGGATTTTCTGCTTCCAACAGTTATTGGCTGCATGCCTATGATTTTACAGAACACATCGATTGGCAGTTTGGCTGGTGCTGCTGTTTCTTCAGCATCTGGCTCTCAGAAATCTCAAATTTGGTCATATCTTTTTCCTGTACTAGGAATTGGCTCTAGCATTCTTATTTCCTTGAGAATTAAGAAGTACTCTACTGAAAATTTAGTGACTGAATCCCCTACCAGTGAGCATATTAATGATTCTAGTAACATTGCCGATTCTAACAAGGAGGACCCGAAAAAGGGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

258

Amino Acids

28.33

Weight (kDa)

9.49

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44960
fragaria_vesca FvH4_4g22120
malus_domestica MD13G1134400.v1.1 MD16G1145000.v1.1
prunus_persica Prupe.1G211100_v2.0.a1
pyrus_communis pycom13g11720 pycom16g11460
rosa_chinensis RchiOBHm_Chr4g0428371
rosa_laevigata RLG00000007157
rosa_multiflora Rmu_sc0004698.1_g000011
rosa_roxburghii Rroxscaffold_5G00370030
rosa_rugosa Rorug04G0225100
rosa_samantha Rh4AG282100 Rh4BG287700 Rh4CG303400 Rh4DG284700
rosa_wichuraiana Rw4G024480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 294
AciI CCGC 4 cut(s) 213, 216, 264, 418
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 2 cut(s) 600, 682
AcuI CTGAAG 2 cut(s) 119, 558
AfaI GTAC 5 cut(s) 74, 152, 359, 624, 671
AfiI CCNNNNNNNGG 3 cut(s) 626, 763, 764
AgsI TTSAA 1 cut(s) 316
AluBI AGCT 3 cut(s) 70, 271, 321
AluI AGCT 3 cut(s) 70, 271, 321
Alw21I GWGCWC 1 cut(s) 323
AlwI GGATC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 2 cut(s) 138, 210
ApeKI GCWGC 4 cut(s) 271, 461, 513, 563
ApoI RAATTY 2 cut(s) 600, 682
AseI ATTAAT 1 cut(s) 717
AspS9I GGNCC 3 cut(s) 138, 343, 754
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 343, 754
BanII GRGCYC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 4 cut(s) 258, 448, 500, 550
BccI CCATC 4 cut(s) 6, 72, 149, 386
BcnI CCSGG 1 cut(s) 242
BfaI CTAG 3 cut(s) 626, 639, 726
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 7 cut(s) 213, 216, 264, 272, 462, 514, 564
BlsI GCNGC 7 cut(s) 214, 217, 265, 273, 463, 515, 565
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 2 cut(s) 343, 754
BmgT120I GGNCC 3 cut(s) 138, 343, 754
BmiI GGNNCC 2 cut(s) 344, 756
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 587
BpmI CTGGAG 1 cut(s) 358
BpuEI CTTGAG 2 cut(s) 307, 676
BpuMI CCSGG 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 154
Bsc4I CCNNNNNNNGG 3 cut(s) 626, 763, 764
Bse1I ACTGG 1 cut(s) 705
Bse3DI GCAATG 2 cut(s) 339, 732
BseCI ATCGAT 1 cut(s) 542
BseGI GGATG 2 cut(s) 83, 141
BseLI CCNNNNNNNGG 3 cut(s) 626, 763, 764
BseMI GCAATG 2 cut(s) 339, 732
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 1 cut(s) 705
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 4 cut(s) 258, 448, 500, 550
BseYI CCCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 140, 212
BshVI ATCGAT 1 cut(s) 542
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 3 cut(s) 626, 763, 764
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 642
BsnI GGCC 2 cut(s) 140, 212
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 2 cut(s) 121, 159
BspACI CCGC 4 cut(s) 213, 216, 264, 418
BspANI GGCC 2 cut(s) 140, 212
BspCNI CTCAG 1 cut(s) 601
BspDI ATCGAT 1 cut(s) 542
BspLI GGNNCC 2 cut(s) 344, 756
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 1 cut(s) 154
BsrDI GCAATG 2 cut(s) 339, 732
BsrI ACTGG 1 cut(s) 705
BssMI GATC 2 cut(s) 121, 159
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 3 cut(s) 2, 228, 233
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 3 cut(s) 188, 418, 518
BstDEI CTNAG 1 cut(s) 588
BstENI CCTNNNNNAGG 1 cut(s) 624
BstF5I GGATG 2 cut(s) 83, 141
BstKTI GATC 2 cut(s) 124, 162
BstMBI GATC 2 cut(s) 121, 159
BstMWI GCNNNNNNNGC 2 cut(s) 461, 563
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 4 cut(s) 258, 448, 500, 550
Bsu15I ATCGAT 1 cut(s) 542
BsuRI GGCC 2 cut(s) 140, 212
BsuTUI ATCGAT 1 cut(s) 542
BtsCI GGATG 2 cut(s) 83, 141
BtsIMutI CAGTG 1 cut(s) 712
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 3 cut(s) 188, 418, 518
CaiI CAGNNNCTG 1 cut(s) 581
Cfr13I GGNCC 3 cut(s) 138, 343, 754
ClaI ATCGAT 1 cut(s) 542
CseI GACGC 2 cut(s) 98, 244
Csp6I GTAC 5 cut(s) 73, 151, 358, 623, 670
CviAII CATG 1 cut(s) 517
CviQI GTAC 5 cut(s) 73, 151, 358, 623, 670
DdeI CTNAG 1 cut(s) 588
DpnI GATC 2 cut(s) 123, 161
DpnII GATC 2 cut(s) 121, 159
Eam1104I CTCTTC 3 cut(s) 2, 228, 233
EarI CTCTTC 3 cut(s) 2, 228, 233
Ecl136II GAGCTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 343, 754
Eco53kI GAGCTC 1 cut(s) 321
Eco57I CTGAAG 2 cut(s) 119, 558
EcoICRI GAGCTC 1 cut(s) 321
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 754
EcoT38I GRGCYC 1 cut(s) 323
FaeI CATG 1 cut(s) 520
FaiI YATR 8 cut(s) 136, 441, 446, 453, 518, 524, 610, 714
FaqI GGGAC 1 cut(s) 95
FatI CATG 1 cut(s) 516
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 7 cut(s) 213, 216, 264, 272, 462, 514, 564
FokI GGATG 2 cut(s) 90, 128
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 7 cut(s) 213, 216, 264, 272, 462, 514, 564
FspBI CTAG 3 cut(s) 626, 639, 726
GluI GCNGC 7 cut(s) 213, 216, 264, 272, 462, 514, 564
GsaI CCCAGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 2 cut(s) 140, 212
HapII CCGG 1 cut(s) 242
HgaI GACGC 2 cut(s) 98, 244
Hin1II CATG 1 cut(s) 520
HinfI GANTC 3 cut(s) 695, 722, 740
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 121, 591
Hpy188III TCNNGA 3 cut(s) 316, 346, 375
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 2 cut(s) 48, 94
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 464, 516
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 563
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 520
Kzo9I GATC 2 cut(s) 121, 159
LpnPI CCDG 9 cut(s) 113, 255, 289, 359, 388, 543, 567, 633, 718
Lsp1109I GCAGC 4 cut(s) 258, 448, 500, 550
LweI GCATC 1 cut(s) 587
MaeI CTAG 3 cut(s) 626, 639, 726
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 688, 728
MalI GATC 2 cut(s) 123, 161
MboI GATC 2 cut(s) 121, 159
MboII GAAGA 6 cut(s) 19, 196, 215, 220, 229, 564
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 8 cut(s) 42, 59, 113, 448, 600, 630, 660, 682
MmeI TCCRAC 2 cut(s) 377, 524
MnlI CCTC 9 cut(s) 179, 202, 260, 296, 342, 371, 380, 445, 745
MseI TTAA 3 cut(s) 308, 663, 717
MslI CAYNNNNRTG 2 cut(s) 521, 717
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 642
MwoI GCNNNNNNNGC 2 cut(s) 461, 563
NciI CCSGG 1 cut(s) 242
NdeII GATC 2 cut(s) 121, 159
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 2 cut(s) 344, 756
NmuCI GTSAC 1 cut(s) 688
NspI RCATGY 1 cut(s) 520
PaeI GCATGC 1 cut(s) 520
PctI GAATGC 1 cut(s) 642
PfeI GAWTC 3 cut(s) 695, 722, 740
PkrI GCNGC 7 cut(s) 214, 217, 265, 273, 463, 515, 565
Ppu21I YACGTR 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 754
PshBI ATTAAT 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 754
PspFI CCCAGC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 344, 756
PspPI GGNCC 3 cut(s) 138, 343, 754
PspPPI RGGWCCY 1 cut(s) 754
PstNI CAGNNNCTG 1 cut(s) 581
RsaI GTAC 5 cut(s) 74, 152, 359, 624, 671
RsaNI GTAC 5 cut(s) 73, 151, 358, 623, 670
RseI CAYNNNNRTG 2 cut(s) 521, 717
SacI GAGCTC 1 cut(s) 323
SaqAI TTAA 3 cut(s) 308, 663, 717
SatI GCNGC 7 cut(s) 213, 216, 264, 272, 462, 514, 564
Sau3AI GATC 2 cut(s) 121, 159
Sau96I GGNCC 3 cut(s) 138, 343, 754
ScaI AGTACT 1 cut(s) 671
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 323
SetI ASST 7 cut(s) 72, 105, 156, 273, 308, 323, 359
SfaNI GCATC 1 cut(s) 587
SinI GGWCC 2 cut(s) 343, 754
SmiMI CAYNNNNRTG 2 cut(s) 521, 717
SmlI CTYRAG 2 cut(s) 322, 655
SmoI CTYRAG 2 cut(s) 322, 655
SphI GCATGC 1 cut(s) 520
Sse9I AATT 8 cut(s) 42, 59, 113, 448, 600, 630, 660, 682
SsiI CCGC 4 cut(s) 213, 216, 264, 418
SspI AATATT 1 cut(s) 312
SspMI CTAG 3 cut(s) 626, 639, 726
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 207, 542
TasI AATT 8 cut(s) 42, 59, 113, 448, 600, 630, 660, 682
TatI WGTACW 2 cut(s) 622, 669
TauI GCSGC 3 cut(s) 215, 218, 266
TfiI GAWTC 3 cut(s) 695, 722, 740
Tru1I TTAA 3 cut(s) 308, 663, 717
Tru9I TTAA 3 cut(s) 308, 663, 717
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 4 cut(s) 271, 461, 513, 563
Tsp45I GTSAC 1 cut(s) 688
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 1 cut(s) 712
VpaK11BI GGWCC 2 cut(s) 343, 754
VspI ATTAAT 1 cut(s) 717
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 2 cut(s) 600, 682
XceI RCATGY 1 cut(s) 520
XspI CTAG 3 cut(s) 626, 639, 726
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.