MD16G1145000.v1.1

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014570
Physical Location & Seq
Forward (+)
11151623 .. 11153502
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1145000.v1.1.491

Sequence Viewer

Length: 765 bp
ATGGCGAAGAGGTGGTGGACAATCGGAGCGGCTGTGGCGTTAATCGGAATAGGGAGGGAGCTGAGCAAGCACTATGGGTTGGACAAGGACGCTGTGCTCAAGGTGTTTGCTGAATTGTCCGATCGCCTGGGAGTATGGGCCATCCCACTGTACGTTTCGATCCACACTATCACTCTCGCTCTCTGCCTGCCCTACGCCGTCTTCTTCGAGGCCGCCGCTTCTATGCTCTTCGGATTCTTCCCGGCCGTCCTCTGCGTCTTTGCCGCAAAGCTGCTCGGCGCTTCCCTCTCTTTCTGGATTGGCAGGTTAATATTCAAGAGTTCAAGCTCAGCAATGGACTGGGTCCAGAAGAATAAGTACTTCAATGTCCTATCCAGAGGAGTTGAACGAGATGGTTGGAGGTTTGTCCTACTTGCCCGGTTCTCGCCAATGCCATCCTACATTATAAATTATGCCCTTGCTGCAACAAAAGTTCGGTTTGTCGTGGATTTTCTGCTGCCGACAGTTATTGGATGCATGCCGATGATTTTACAAAACACATCCATTGGCAGCCTGGCTGGTGCTGCTGTTTCTTCAGCATCGGGCTCTCAAAAATCTCAAATTTGGTCGTACCTTTTTCCTTTACTAGGAATTGTGTCAAGCATTCTTATTTCCTTGAGAATTAAGAAGTACTCTACTGAAAATTTAGTGACCGAATCATCTCCAAGTCACGACTCTAGTAACTTAGTTAACTCTAATGACAAGGACTTGAAAAAAGGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

255

Amino Acids

27.9

Weight (kDa)

9.6

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 64 - 184 7e-25 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44960
fragaria_vesca FvH4_4g22120
malus_domestica MD13G1134400.v1.1 MD16G1145000.v1.1
prunus_persica Prupe.1G211100_v2.0.a1
pyrus_communis pycom13g11720 pycom16g11460
rosa_chinensis RchiOBHm_Chr4g0428371
rosa_laevigata RLG00000007157
rosa_multiflora Rmu_sc0004698.1_g000011
rosa_roxburghii Rroxscaffold_5G00370030
rosa_rugosa Rorug04G0225100
rosa_samantha Rh4AG282100 Rh4BG287700 Rh4CG303400 Rh4DG284700
rosa_wichuraiana Rw4G024480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
Acc36I ACCTGC 1 cut(s) 294
AccBSI CCGCTC 1 cut(s) 29
AciI CCGC 4 cut(s) 29, 213, 216, 264
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 2 cut(s) 600, 682
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 4 cut(s) 152, 359, 611, 671
AfiI CCNNNNNNNGG 1 cut(s) 626
AgsI TTSAA 5 cut(s) 316, 324, 364, 386, 751
AjnI CCWGG 2 cut(s) 126, 552
AluBI AGCT 3 cut(s) 61, 271, 327
AluI AGCT 3 cut(s) 61, 271, 327
Alw21I GWGCWC 1 cut(s) 99
AlwI GGATC 1 cut(s) 154
AoxI GGCC 3 cut(s) 138, 210, 243
ApeKI GCWGC 5 cut(s) 271, 461, 496, 549, 563
ApoI RAATTY 2 cut(s) 600, 682
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 138, 343
AsuC2I CCSGG 2 cut(s) 242, 418
AvaII GGWCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 587
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BbsI GAAGAC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 5 cut(s) 258, 448, 483, 550, 561
BccI CCATC 3 cut(s) 149, 386, 442
BceAI ACGGC 2 cut(s) 182, 230
BciT130I CCWGG 2 cut(s) 128, 554
BcnI CCSGG 2 cut(s) 242, 418
BfaI CTAG 2 cut(s) 626, 717
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 9 cut(s) 30, 213, 216, 264, 272, 462, 497, 550, 564
BlpI GCTNAGC 2 cut(s) 62, 328
BlsI GCNGC 9 cut(s) 31, 214, 217, 265, 273, 463, 498, 551, 565
BmcAI AGTACT 2 cut(s) 359, 671
Bme1390I CCNGG 4 cut(s) 128, 242, 418, 554
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 2 cut(s) 138, 343
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 4 cut(s) 128, 242, 418, 554
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 503, 587
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 193
Bpu1102I GCTNAGC 2 cut(s) 62, 328
BpuEI CTTGAG 2 cut(s) 83, 676
BpuMI CCSGG 2 cut(s) 242, 418
BsaJI CCNNGG 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 626
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 2 cut(s) 128, 554
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 4 cut(s) 141, 434, 518, 539
BseLI CCNNNNNNNGG 1 cut(s) 626
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 53, 342
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 393
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 5 cut(s) 258, 448, 483, 550, 561
Bsh1285I CGRYCG 2 cut(s) 124, 246
BshFI GGCC 3 cut(s) 140, 212, 245
BsiEI CGRYCG 2 cut(s) 124, 246
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 242, 418
BslI CCNNNNNNNGG 1 cut(s) 626
BsmI GAATGC 1 cut(s) 642
BsnI GGCC 3 cut(s) 140, 212, 245
Bsp1286I GDGCHC 2 cut(s) 99, 587
Bsp143I GATC 2 cut(s) 121, 159
Bsp1720I GCTNAGC 2 cut(s) 62, 328
BspACI CCGC 4 cut(s) 29, 213, 216, 264
BspANI GGCC 3 cut(s) 140, 212, 245
BspCNI CTCAG 2 cut(s) 54, 341
BspLI GGNNCC 1 cut(s) 344
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 121, 159
Bst2UI CCWGG 2 cut(s) 128, 554
Bst4CI ACNGT 2 cut(s) 150, 505
Bst6I CTCTTC 2 cut(s) 2, 233
BstC8I GCNNGC 3 cut(s) 68, 188, 518
BstDEI CTNAG 3 cut(s) 62, 328, 724
BstENI CCTNNNNNAGG 1 cut(s) 624
BstF5I GGATG 4 cut(s) 141, 434, 518, 539
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 124, 162
BstMBI GATC 2 cut(s) 121, 159
BstMCI CGRYCG 2 cut(s) 124, 246
BstMWI GCNNNNNNNGC 4 cut(s) 35, 67, 461, 563
BstNI CCWGG 2 cut(s) 128, 554
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 4 cut(s) 126, 240, 416, 552
BstV1I GCAGC 5 cut(s) 258, 448, 483, 550, 561
BstV2I GAAGAC 1 cut(s) 193
BstZI CGGCCG 1 cut(s) 243
BsuRI GGCC 3 cut(s) 140, 212, 245
BtsCI GGATG 4 cut(s) 141, 434, 518, 539
BtsIMutI CAGTG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 3 cut(s) 68, 188, 518
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 138, 343
CseI GACGC 2 cut(s) 98, 244
Csp6I GTAC 4 cut(s) 151, 358, 610, 670
CviAII CATG 1 cut(s) 517
CviQI GTAC 4 cut(s) 151, 358, 610, 670
DdeI CTNAG 3 cut(s) 62, 328, 724
DpnI GATC 2 cut(s) 123, 161
DpnII GATC 2 cut(s) 121, 159
EaeI YGGCCR 1 cut(s) 243
EagI CGGCCG 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 2, 233
EarI CTCTTC 2 cut(s) 2, 233
EclXI CGGCCG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 343
Eco52I CGGCCG 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 558
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoRII CCWGG 2 cut(s) 126, 552
EcoT22I ATGCAT 1 cut(s) 518
EcoT38I GRGCYC 1 cut(s) 587
FaeI CATG 1 cut(s) 520
FaiI YATR 6 cut(s) 75, 136, 224, 446, 453, 518
FatI CATG 1 cut(s) 516
Fnu4HI GCNGC 9 cut(s) 30, 213, 216, 264, 272, 462, 497, 550, 564
FokI GGATG 4 cut(s) 128, 421, 525, 526
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 9 cut(s) 30, 213, 216, 264, 272, 462, 497, 550, 564
FspBI CTAG 2 cut(s) 626, 717
GlaI GCGC 1 cut(s) 280
GluI GCNGC 9 cut(s) 30, 213, 216, 264, 272, 462, 497, 550, 564
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 140, 212, 245
HapII CCGG 2 cut(s) 242, 418
HgaI GACGC 2 cut(s) 98, 244
HhaI GCGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 520
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 3 cut(s) 234, 695, 713
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 2 cut(s) 242, 418
Hpy166II GTNNAC 2 cut(s) 18, 730
Hpy188I TCNGA 4 cut(s) 26, 47, 121, 233
Hpy188III TCNNGA 5 cut(s) 295, 316, 346, 375, 710
Hpy8I GTNNAC 2 cut(s) 18, 730
HpyCH4III ACNGT 2 cut(s) 150, 505
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 464, 516
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 67, 461, 563
HpyF3I CTNAG 3 cut(s) 62, 328, 724
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 520
HspAI GCGC 1 cut(s) 279
KspAI GTTAAC 1 cut(s) 730
Kzo9I GATC 2 cut(s) 121, 159
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 2 cut(s) 26, 58
Lsp1109I GCAGC 5 cut(s) 258, 448, 483, 550, 561
LweI GCATC 2 cut(s) 503, 587
MaeI CTAG 2 cut(s) 626, 717
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 3 cut(s) 688, 707, 719
MalI GATC 2 cut(s) 123, 161
MbiI CCGCTC 1 cut(s) 29
MboI GATC 2 cut(s) 121, 159
MboII GAAGA 7 cut(s) 19, 193, 196, 220, 229, 361, 564
MhlI GDGCHC 2 cut(s) 99, 587
MluCI AATT 6 cut(s) 113, 448, 600, 630, 660, 682
MlyI GAGTC 1 cut(s) 707
MmeI TCCRAC 2 cut(s) 60, 377
MnlI CCTC 7 cut(s) 3, 48, 202, 260, 296, 371, 393
Mph1103I ATGCAT 1 cut(s) 518
MseI TTAA 4 cut(s) 41, 308, 663, 729
MslI CAYNNNNRTG 1 cut(s) 521
MspI CCGG 2 cut(s) 242, 418
MspR9I CCNGG 4 cut(s) 128, 242, 418, 554
Mva1269I GAATGC 1 cut(s) 642
MvaI CCWGG 2 cut(s) 128, 554
MwoI GCNNNNNNNGC 4 cut(s) 35, 67, 461, 563
NciI CCSGG 2 cut(s) 242, 418
NdeII GATC 2 cut(s) 121, 159
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 1 cut(s) 344
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 2 cut(s) 688, 707
NsiI ATGCAT 1 cut(s) 518
NspI RCATGY 1 cut(s) 520
PaeI GCATGC 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 233
PctI GAATGC 1 cut(s) 642
PfeI GAWTC 2 cut(s) 234, 695
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 9 cut(s) 31, 214, 217, 265, 273, 463, 498, 551, 565
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 1 cut(s) 707
PpsI GAGTC 1 cut(s) 707
PsiI TTATAA 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 126, 552
PspGI CCWGG 2 cut(s) 126, 552
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 2 cut(s) 138, 343
PsyI GACNNNGTC 1 cut(s) 341
PvuI CGATCG 1 cut(s) 124
RsaI GTAC 4 cut(s) 152, 359, 611, 671
RsaNI GTAC 4 cut(s) 151, 358, 610, 670
RseI CAYNNNNRTG 1 cut(s) 521
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 4 cut(s) 41, 308, 663, 729
SatI GCNGC 9 cut(s) 30, 213, 216, 264, 272, 462, 497, 550, 564
Sau3AI GATC 2 cut(s) 121, 159
Sau96I GGNCC 2 cut(s) 138, 343
ScaI AGTACT 2 cut(s) 359, 671
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 4 cut(s) 128, 242, 418, 554
SduI GDGCHC 2 cut(s) 99, 587
SfaNI GCATC 2 cut(s) 503, 587
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 2 cut(s) 98, 655
SmoI CTYRAG 2 cut(s) 98, 655
SphI GCATGC 1 cut(s) 520
Sse9I AATT 6 cut(s) 113, 448, 600, 630, 660, 682
SsiI CCGC 4 cut(s) 29, 213, 216, 264
SspI AATATT 1 cut(s) 312
SspMI CTAG 2 cut(s) 626, 717
StyD4I CCNGG 4 cut(s) 126, 240, 416, 552
TaaI ACNGT 2 cut(s) 150, 505
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 158, 207
TaqII GACCGA 1 cut(s) 707
TasI AATT 6 cut(s) 113, 448, 600, 630, 660, 682
TatI WGTACW 2 cut(s) 357, 669
TauI GCSGC 4 cut(s) 32, 215, 218, 266
TfiI GAWTC 2 cut(s) 234, 695
Tru1I TTAA 4 cut(s) 41, 308, 663, 729
Tru9I TTAA 4 cut(s) 41, 308, 663, 729
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 2 cut(s) 688, 707
TseI GCWGC 5 cut(s) 271, 461, 496, 549, 563
Tsp45I GTSAC 2 cut(s) 688, 707
TspRI CASTG 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 343
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 2 cut(s) 600, 682
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XspI CTAG 2 cut(s) 626, 717
ZrmI AGTACT 2 cut(s) 359, 671
Zsp2I ATGCAT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.