MD13G1134400.v1.1

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014570
Physical Location & Seq
Forward (+)
10295295 .. 10299106
3812 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1134400.v1.1.491

Sequence Viewer

Length: 765 bp
ATGGCGAAGAGGTGGTGGACAATCGGGGCTGCGGTGGCGATAATCGGAACAGGGAGGGAGCTGAGCAAGCACTACGGGTTGGACAAGGACGCTTTGCTCAAGGTGTTTGCTGAATTGTCCGATCGGCTGGGAGTATGGGCCATCCCACTGTACGTTGCGATCCACACTCTCACTCTCGCTCTCTGCCTGCCCTACGCCGTCTTCTTCGAGGCCGCCGCTTCAATGCTCTTCGGCTTCTTCCCGGCTATCCTCTGCGTCTTTGCCGCCAAGCTGCTCGGCGCTTCCCTCTCGTTCTGGATTGGCAGGTTAATATTCAAGAGCTCAAGTTCAGCAATGGACTGGGTCCAGAAGAATAAGTACTTCAATGTCCTATCAAGAGGAGTTGAGCGAGATGGTTGGAGGTTTGTCCTACTCGCCCGGTTCTCGCCGATGCCATCTTACATTATAAATTACGCCCTTGCTGCTACAAAAGTTCGGTTTGTTGTGGATTTTCTGCTGCCAACGGTTATTGGATGCATGCCGATGATTTTACAAAACACATCCATTGGCAGCCTGGCTGGTGCTACTGTTTCTTCGGCATCTGGCTCTCAGAAATCTCAAATTTGGTCGTACCTTTTTCCTCTACTAGGAATTGTGTCAAGCGTTGTTATTTCCTTGAGAATTAAGAAGTACTCTACTGAAAATTTAGTGGCTAAATCATCTCCAAGTCACGACTCTAGTAACATAGTTAGCTCTAATGACAAGGACCTGAAAAAGGGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

255

Amino Acids

27.85

Weight (kDa)

9.73

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 64 - 184 4.7e-25 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44960
fragaria_vesca FvH4_4g22120
malus_domestica MD13G1134400.v1.1 MD16G1145000.v1.1
prunus_persica Prupe.1G211100_v2.0.a1
pyrus_communis pycom13g11720 pycom16g11460
rosa_chinensis RchiOBHm_Chr4g0428371
rosa_laevigata RLG00000007157
rosa_multiflora Rmu_sc0004698.1_g000011
rosa_roxburghii Rroxscaffold_5G00370030
rosa_rugosa Rorug04G0225100
rosa_samantha Rh4AG282100 Rh4BG287700 Rh4CG303400 Rh4DG284700
rosa_wichuraiana Rw4G024480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
Acc36I ACCTGC 1 cut(s) 294
AciI CCGC 4 cut(s) 32, 213, 216, 264
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 2 cut(s) 600, 682
AfaI GTAC 4 cut(s) 152, 359, 611, 671
AfiI CCNNNNNNNGG 2 cut(s) 626, 754
AgsI TTSAA 3 cut(s) 222, 316, 364
AjnI CCWGG 1 cut(s) 552
AluBI AGCT 4 cut(s) 61, 271, 321, 732
AluI AGCT 4 cut(s) 61, 271, 321, 732
Alw21I GWGCWC 1 cut(s) 323
AlwI GGATC 1 cut(s) 154
AoxI GGCC 2 cut(s) 138, 210
ApeKI GCWGC 5 cut(s) 29, 271, 461, 496, 549
ApoI RAATTY 2 cut(s) 600, 682
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 3 cut(s) 138, 343, 745
AsuC2I CCSGG 2 cut(s) 242, 418
AvaII GGWCC 2 cut(s) 343, 745
BanII GRGCYC 1 cut(s) 323
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BbsI GAAGAC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 5 cut(s) 16, 258, 448, 483, 561
BccI CCATC 3 cut(s) 149, 386, 442
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 554
BcnI CCSGG 2 cut(s) 242, 418
BfaI CTAG 2 cut(s) 626, 717
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 8 cut(s) 30, 213, 216, 264, 272, 462, 497, 550
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 8 cut(s) 31, 214, 217, 265, 273, 463, 498, 551
BmcAI AGTACT 2 cut(s) 359, 671
Bme1390I CCNGG 3 cut(s) 242, 418, 554
Bme18I GGWCC 2 cut(s) 343, 745
BmgT120I GGNCC 3 cut(s) 138, 343, 745
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 3 cut(s) 242, 418, 554
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 3 cut(s) 420, 503, 587
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 193
Bpu1102I GCTNAGC 1 cut(s) 62
BpuEI CTTGAG 3 cut(s) 83, 307, 676
BpuMI CCSGG 2 cut(s) 242, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 626, 754
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 554
BseGI GGATG 3 cut(s) 141, 518, 539
BseLI CCNNNNNNNGG 2 cut(s) 626, 754
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 53, 602
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 5 cut(s) 16, 258, 448, 483, 561
BseYI CCCAGC 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 2 cut(s) 140, 212
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 2 cut(s) 242, 418
BslI CCNNNNNNNGG 2 cut(s) 626, 754
BsnI GGCC 2 cut(s) 140, 212
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 2 cut(s) 121, 159
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 4 cut(s) 32, 213, 216, 264
BspANI GGCC 2 cut(s) 140, 212
BspCNI CTCAG 2 cut(s) 54, 601
BspLI GGNNCC 1 cut(s) 344
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 1 cut(s) 344
BssMI GATC 2 cut(s) 121, 159
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 3 cut(s) 150, 505, 568
Bst6I CTCTTC 2 cut(s) 2, 233
BstC8I GCNNGC 3 cut(s) 68, 188, 518
BstDEI CTNAG 2 cut(s) 62, 588
BstENI CCTNNNNNAGG 2 cut(s) 624, 752
BstF5I GGATG 3 cut(s) 141, 518, 539
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 124, 162
BstMBI GATC 2 cut(s) 121, 159
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 35, 67, 461
BstNI CCWGG 1 cut(s) 554
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 3 cut(s) 240, 416, 552
BstV1I GCAGC 5 cut(s) 16, 258, 448, 483, 561
BstV2I GAAGAC 1 cut(s) 193
BsuRI GGCC 2 cut(s) 140, 212
BtsCI GGATG 3 cut(s) 141, 518, 539
BtsIMutI CAGTG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 3 cut(s) 68, 188, 518
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 3 cut(s) 138, 343, 745
CseI GACGC 2 cut(s) 98, 244
Csp6I GTAC 4 cut(s) 151, 358, 610, 670
CviAII CATG 1 cut(s) 517
CviQI GTAC 4 cut(s) 151, 358, 610, 670
DdeI CTNAG 2 cut(s) 62, 588
DpnI GATC 2 cut(s) 123, 161
DpnII GATC 2 cut(s) 121, 159
Eam1104I CTCTTC 2 cut(s) 2, 233
EarI CTCTTC 2 cut(s) 2, 233
Ecl136II GAGCTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 343, 745
Eco53kI GAGCTC 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 321
EcoNI CCTNNNNNAGG 2 cut(s) 624, 752
EcoO109I RGGNCCY 1 cut(s) 745
EcoRII CCWGG 1 cut(s) 552
EcoT22I ATGCAT 1 cut(s) 518
EcoT38I GRGCYC 1 cut(s) 323
FaeI CATG 1 cut(s) 520
FaiI YATR 4 cut(s) 136, 446, 518, 725
FatI CATG 1 cut(s) 516
Fnu4HI GCNGC 8 cut(s) 30, 213, 216, 264, 272, 462, 497, 550
FokI GGATG 3 cut(s) 128, 525, 526
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 8 cut(s) 30, 213, 216, 264, 272, 462, 497, 550
FspBI CTAG 2 cut(s) 626, 717
GlaI GCGC 1 cut(s) 280
GluI GCNGC 8 cut(s) 30, 213, 216, 264, 272, 462, 497, 550
GsaI CCCAGC 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 2 cut(s) 140, 212
HapII CCGG 2 cut(s) 242, 418
HgaI GACGC 2 cut(s) 98, 244
HhaI GCGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 520
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 1 cut(s) 713
HpaII CCGG 2 cut(s) 242, 418
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 3 cut(s) 47, 121, 591
Hpy188III TCNNGA 5 cut(s) 295, 316, 346, 375, 710
Hpy8I GTNNAC 1 cut(s) 18
HpyCH4III ACNGT 3 cut(s) 150, 505, 568
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 516
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 67, 461
HpyF3I CTNAG 2 cut(s) 62, 588
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 520
HspAI GCGC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 121, 159
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 5 cut(s) 16, 258, 448, 483, 561
LweI GCATC 3 cut(s) 420, 503, 587
MaeI CTAG 2 cut(s) 626, 717
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 707, 719
MalI GATC 2 cut(s) 123, 161
MboI GATC 2 cut(s) 121, 159
MboII GAAGA 7 cut(s) 19, 193, 196, 220, 229, 361, 564
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 6 cut(s) 113, 448, 600, 630, 660, 682
MlyI GAGTC 1 cut(s) 707
MmeI TCCRAC 2 cut(s) 60, 377
MnlI CCTC 8 cut(s) 3, 48, 202, 260, 296, 371, 393, 630
Mph1103I ATGCAT 1 cut(s) 518
MseI TTAA 2 cut(s) 308, 663
MslI CAYNNNNRTG 1 cut(s) 521
MspI CCGG 2 cut(s) 242, 418
MspR9I CCNGG 3 cut(s) 242, 418, 554
MvaI CCWGG 1 cut(s) 554
MwoI GCNNNNNNNGC 3 cut(s) 35, 67, 461
NciI CCSGG 2 cut(s) 242, 418
NdeII GATC 2 cut(s) 121, 159
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 1 cut(s) 344
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 707
NsiI ATGCAT 1 cut(s) 518
NspI RCATGY 1 cut(s) 520
PaeI GCATGC 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 8 cut(s) 31, 214, 217, 265, 273, 463, 498, 551
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 1 cut(s) 707
PpsI GAGTC 1 cut(s) 707
PpuMI RGGWCCY 1 cut(s) 745
PsiI TTATAA 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 745
Psp6I CCWGG 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 3 cut(s) 138, 343, 745
PspPPI RGGWCCY 1 cut(s) 745
PsyI GACNNNGTC 1 cut(s) 341
PvuI CGATCG 1 cut(s) 124
RsaI GTAC 4 cut(s) 152, 359, 611, 671
RsaNI GTAC 4 cut(s) 151, 358, 610, 670
RseI CAYNNNNRTG 1 cut(s) 521
SacI GAGCTC 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 308, 663
SatI GCNGC 8 cut(s) 30, 213, 216, 264, 272, 462, 497, 550
Sau3AI GATC 2 cut(s) 121, 159
Sau96I GGNCC 3 cut(s) 138, 343, 745
ScaI AGTACT 2 cut(s) 359, 671
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 3 cut(s) 242, 418, 554
SduI GDGCHC 1 cut(s) 323
SfaNI GCATC 3 cut(s) 420, 503, 587
SinI GGWCC 2 cut(s) 343, 745
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 3 cut(s) 98, 322, 655
SmoI CTYRAG 3 cut(s) 98, 322, 655
SphI GCATGC 1 cut(s) 520
Sse9I AATT 6 cut(s) 113, 448, 600, 630, 660, 682
SsiI CCGC 4 cut(s) 32, 213, 216, 264
SspI AATATT 1 cut(s) 312
SspMI CTAG 2 cut(s) 626, 717
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 240, 416, 552
TaaI ACNGT 3 cut(s) 150, 505, 568
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 207
TasI AATT 6 cut(s) 113, 448, 600, 630, 660, 682
TatI WGTACW 2 cut(s) 357, 669
TauI GCSGC 3 cut(s) 215, 218, 266
Tru1I TTAA 2 cut(s) 308, 663
Tru9I TTAA 2 cut(s) 308, 663
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 5 cut(s) 29, 271, 461, 496, 549
Tsp45I GTSAC 1 cut(s) 707
TspRI CASTG 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 343, 745
XagI CCTNNNNNAGG 2 cut(s) 624, 752
XapI RAATTY 2 cut(s) 600, 682
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XspI CTAG 2 cut(s) 626, 717
ZrmI AGTACT 2 cut(s) 359, 671
Zsp2I ATGCAT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.