Rh4CG303400

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014570
Physical Location & Seq
Reverse (-)
56368434 .. 56369970
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG303400.1

Sequence Viewer

Length: 780 bp
ATGGGGAAGAAATGGTGGACGATCGGAGTGGCGGTGGCGATAGTGGGAACGGTGAGGGAGGTGAGCAAGCAATACGGGTGGGACAAGGACGCTTTGATCAAGGTCTTTGCTGAATTGTCTGATCGCTTAGGGGTTTGGGCAATCCCAATCTACGTCGCCATCCACACTCTCACTCTCGCTCTCTGTTTGCCCTACGCCGTCTTCTTCGAGGCCGCCGCTTCTATGCTCTTTGGGTTTTTCCCCGCGGTGCTCTGCGTCTTCGCCGCCAAGCTCCTCGGCGCTTCCCTCTCATTCTGGATCGGCAGGTTGATATTTAAGAGTTCAACTTCAGCAATGGAATGGGTACAGAAAAACAAGTACTTTGCTGTACTCTCCAGAGGAGTTGAGCGGGATGGTTGGCGATTCGTGCTTCTTGCTCGCTTCTCGCCAATGCCTTCCTATATTATAAACTATGCCCTAGCTGCGACGAAAGTTCGGTTTGTTGTGGATTTCTTGCTCCCGACAGTTATTGGATGCATGCCGATGATTTTACAGAACACGTCGATTGGCAGCTTGGCTGGTGCTGCTGTTTCTTCAGCCGCTGGCTCCCAGAAATCTAAAGTTTGGTCATACCTTTTTCCTGTACTAGGAATTATGTCGAGCATTCTTATTTCCTTGAGAATTAAGAAGTACTCCACTGAAAAATTAGTGACTGAATCGTCTCCCATCCCCAGTGAGCATTCACACGACTCTAATAACAGCAATGACTCTAATAACAAGGACCTGAAAAAGGGTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

259

Amino Acids

28.52

Weight (kDa)

9.61

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 64 - 184 4e-24 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44960
fragaria_vesca FvH4_4g22120
malus_domestica MD13G1134400.v1.1 MD16G1145000.v1.1
prunus_persica Prupe.1G211100_v2.0.a1
pyrus_communis pycom13g11720 pycom16g11460
rosa_chinensis RchiOBHm_Chr4g0428371
rosa_laevigata RLG00000007157
rosa_multiflora Rmu_sc0004698.1_g000011
rosa_roxburghii Rroxscaffold_5G00370030
rosa_rugosa Rorug04G0225100
rosa_samantha Rh4AG282100 Rh4BG287700 Rh4CG303400 Rh4DG284700
rosa_wichuraiana Rw4G024480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AasI GACNNNNNNGTC 1 cut(s) 697
Acc36I ACCTGC 1 cut(s) 294
AccBSI CCGCTC 1 cut(s) 388
AccII CGCG 1 cut(s) 245
AciI CCGC 8 cut(s) 32, 213, 216, 243, 245, 264, 388, 579
AclWI GGATC 1 cut(s) 305
AcuI CTGAAG 2 cut(s) 312, 558
AfaI GTAC 5 cut(s) 345, 359, 369, 624, 671
AfiI CCNNNNNNNGG 2 cut(s) 626, 769
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 1 cut(s) 324
AjiI CACGTC 1 cut(s) 540
AluBI AGCT 3 cut(s) 271, 461, 552
AluI AGCT 3 cut(s) 271, 461, 552
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 705
AlwI GGATC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 461, 549, 563
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 760
AsuHPI GGTGA 2 cut(s) 64, 73
AvaII GGWCC 1 cut(s) 760
BbsI GAAGAC 2 cut(s) 193, 250
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 448, 550, 561
BccI CCATC 3 cut(s) 167, 386, 713
BceAI ACGGC 1 cut(s) 182
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 705
BfaI CTAG 2 cut(s) 458, 626
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 7 cut(s) 213, 216, 264, 462, 550, 564, 579
BlsI GCNGC 7 cut(s) 214, 217, 265, 463, 551, 565, 580
BmcAI AGTACT 2 cut(s) 359, 671
Bme18I GGWCC 1 cut(s) 760
BmgBI CACGTC 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 760
BmiI GGNNCC 1 cut(s) 586
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 1 cut(s) 503
BmuI ACTGGG 1 cut(s) 705
BpiI GAAGAC 2 cut(s) 193, 250
BpmI CTGGAG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 676
BsaJI CCNNGG 2 cut(s) 243, 274
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 626, 769
Bse1I ACTGG 1 cut(s) 711
Bse3DI GCAATG 2 cut(s) 339, 748
BseDI CCNNGG 2 cut(s) 243, 274
BseGI GGATG 4 cut(s) 159, 397, 518, 705
BseLI CCNNNNNNNGG 2 cut(s) 626, 769
BseMI GCAATG 2 cut(s) 339, 748
BseNI ACTGG 1 cut(s) 711
BseRI GAGGAG 2 cut(s) 263, 393
BseXI GCAGC 3 cut(s) 448, 550, 561
Bsh1236I CGCG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 626, 769
BsmAI GTCTC 1 cut(s) 705
BsmBI CGTCTC 1 cut(s) 705
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 2 cut(s) 642, 718
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 21, 96, 121, 297
BspACI CCGC 8 cut(s) 32, 213, 216, 243, 245, 264, 388, 579
BspANI GGCC 1 cut(s) 212
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 388
BsrDI GCAATG 2 cut(s) 339, 748
BsrI ACTGG 1 cut(s) 711
BssECI CCNNGG 2 cut(s) 243, 274
BssMI GATC 4 cut(s) 21, 96, 121, 297
Bst4CI ACNGT 2 cut(s) 52, 505
BstC8I GCNNGC 4 cut(s) 68, 418, 518, 583
BstDEI CTNAG 1 cut(s) 127
BstDSI CCRYGG 1 cut(s) 243
BstENI CCTNNNNNAGG 2 cut(s) 624, 767
BstF5I GGATG 4 cut(s) 159, 397, 518, 705
BstFNI CGCG 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 4 cut(s) 24, 99, 124, 300
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 4 cut(s) 21, 96, 121, 297
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 3 cut(s) 406, 461, 563
BstNSI RCATGY 1 cut(s) 520
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 3 cut(s) 448, 550, 561
BstV2I GAAGAC 2 cut(s) 193, 250
BsuRI GGCC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 243
BtrI CACGTC 1 cut(s) 540
BtsCI GGATG 4 cut(s) 159, 397, 518, 705
BtsIMutI CAGTG 2 cut(s) 675, 718
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 4 cut(s) 68, 418, 518, 583
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 760
Cfr42I CCGCGG 1 cut(s) 246
CseI GACGC 2 cut(s) 98, 244
Csp6I GTAC 5 cut(s) 344, 358, 368, 623, 670
CspCI CAANNNNNGTGG 2 cut(s) 59, 94
CviAII CATG 1 cut(s) 517
CviJI RGCY 7 cut(s) 212, 271, 461, 552, 557, 578, 585
CviKI_1 RGCY 7 cut(s) 212, 271, 461, 552, 557, 578, 585
CviQI GTAC 5 cut(s) 344, 358, 368, 623, 670
DdeI CTNAG 1 cut(s) 127
DpnI GATC 4 cut(s) 23, 98, 123, 299
DpnII GATC 4 cut(s) 21, 96, 121, 297
DrdI GACNNNNNNGTC 1 cut(s) 697
DseDI GACNNNNNNGTC 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 760
Eco57I CTGAAG 2 cut(s) 312, 558
EcoNI CCTNNNNNAGG 2 cut(s) 624, 767
EcoO109I RGGNCCY 1 cut(s) 760
EcoT22I ATGCAT 1 cut(s) 518
Esp3I CGTCTC 1 cut(s) 705
FaeI CATG 1 cut(s) 520
FaiI YATR 7 cut(s) 224, 441, 446, 453, 518, 610, 635
FaqI GGGAC 1 cut(s) 95
FatI CATG 1 cut(s) 516
FauI CCCGC 2 cut(s) 250, 381
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 7 cut(s) 213, 216, 264, 462, 550, 564, 579
FokI GGATG 4 cut(s) 146, 404, 525, 692
Fsp4HI GCNGC 7 cut(s) 213, 216, 264, 462, 550, 564, 579
FspBI CTAG 2 cut(s) 458, 626
GlaI GCGC 1 cut(s) 280
GluI GCNGC 7 cut(s) 213, 216, 264, 462, 550, 564, 579
GsuI CTGGAG 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 1 cut(s) 212
HgaI GACGC 2 cut(s) 98, 244
HhaI GCGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 520
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 4 cut(s) 402, 695, 728, 746
HphI GGTGA 2 cut(s) 64, 73
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 26, 121
Hpy188III TCNNGA 3 cut(s) 295, 375, 499
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 3 cut(s) 158, 469, 544
HpyAV CCTTC 1 cut(s) 444
HpyCH4III ACNGT 2 cut(s) 52, 505
HpyCH4IV ACGT 2 cut(s) 153, 539
HpyCH4V TGCA 1 cut(s) 516
HpyF10VI GCNNNNNNNGC 3 cut(s) 406, 461, 563
HpyF3I CTNAG 1 cut(s) 127
HpySE526I ACGT 2 cut(s) 153, 539
Hsp92II CATG 1 cut(s) 520
HspAI GCGC 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 96
KspI CCGCGG 1 cut(s) 246
Kzo9I GATC 4 cut(s) 21, 96, 121, 297
LmnI GCTCC 3 cut(s) 276, 501, 590
LpnPI CCDG 9 cut(s) 280, 289, 388, 543, 567, 602, 633, 724, 776
Lsp1109I GCAGC 3 cut(s) 448, 550, 561
LweI GCATC 1 cut(s) 503
MaeI CTAG 2 cut(s) 458, 626
MaeII ACGT 2 cut(s) 153, 539
MaeIII GTNAC 1 cut(s) 688
MalI GATC 4 cut(s) 23, 98, 123, 299
MbiI CCGCTC 1 cut(s) 388
MboI GATC 4 cut(s) 21, 96, 121, 297
MboII GAAGA 5 cut(s) 19, 193, 196, 250, 564
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 4 cut(s) 113, 630, 660, 683
MlyI GAGTC 2 cut(s) 722, 740
MnlI CCTC 6 cut(s) 48, 52, 202, 284, 296, 371
Mph1103I ATGCAT 1 cut(s) 518
MseI TTAA 2 cut(s) 315, 663
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 245, 581
Mva1269I GAATGC 2 cut(s) 642, 718
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 406, 461, 563
NdeII GATC 4 cut(s) 21, 96, 121, 297
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 1 cut(s) 586
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 688
NsiI ATGCAT 1 cut(s) 518
NspI RCATGY 1 cut(s) 520
PaeI GCATGC 1 cut(s) 520
PctI GAATGC 2 cut(s) 642, 718
PfeI GAWTC 2 cut(s) 402, 695
PkrI GCNGC 7 cut(s) 214, 217, 265, 463, 551, 565, 580
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 2 cut(s) 722, 740
PpsI GAGTC 2 cut(s) 722, 740
PpuMI RGGWCCY 1 cut(s) 760
PsiI TTATAA 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 760
PspN4I GGNNCC 1 cut(s) 586
PspPI GGNCC 1 cut(s) 760
PspPPI RGGWCCY 1 cut(s) 760
PstNI CAGNNNCTG 1 cut(s) 581
PvuI CGATCG 1 cut(s) 24
RsaI GTAC 5 cut(s) 345, 359, 369, 624, 671
RsaNI GTAC 5 cut(s) 344, 358, 368, 623, 670
RseI CAYNNNNRTG 1 cut(s) 521
SacII CCGCGG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 315, 663
SatI GCNGC 7 cut(s) 213, 216, 264, 462, 550, 564, 579
Sau3AI GATC 4 cut(s) 21, 96, 121, 297
Sau96I GGNCC 1 cut(s) 760
ScaI AGTACT 2 cut(s) 359, 671
SchI GAGTC 2 cut(s) 722, 740
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 1 cut(s) 503
Sfr303I CCGCGG 1 cut(s) 246
SgrBI CCGCGG 1 cut(s) 246
SinI GGWCC 1 cut(s) 760
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
SphI GCATGC 1 cut(s) 520
Sse9I AATT 4 cut(s) 113, 630, 660, 683
SsiI CCGC 8 cut(s) 32, 213, 216, 243, 245, 264, 388, 579
SspMI CTAG 2 cut(s) 458, 626
TaaI ACNGT 2 cut(s) 52, 505
TaiI ACGT 2 cut(s) 156, 542
TaqI TCGA 3 cut(s) 207, 542, 638
TasI AATT 4 cut(s) 113, 630, 660, 683
TatI WGTACW 4 cut(s) 357, 367, 622, 669
TauI GCSGC 4 cut(s) 215, 218, 266, 581
TfiI GAWTC 2 cut(s) 402, 695
Tru1I TTAA 2 cut(s) 315, 663
Tru9I TTAA 2 cut(s) 315, 663
TscAI CASTG 2 cut(s) 682, 718
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 3 cut(s) 461, 549, 563
Tsp45I GTSAC 1 cut(s) 688
TspRI CASTG 2 cut(s) 682, 718
VpaK11BI GGWCC 1 cut(s) 760
XagI CCTNNNNNAGG 2 cut(s) 624, 767
XceI RCATGY 1 cut(s) 520
XspI CTAG 2 cut(s) 458, 626
ZrmI AGTACT 2 cut(s) 359, 671
Zsp2I ATGCAT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.