Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011338

Physical Location & Seq

Genomic Coordinates Forward (+)

17152896 .. 17154843

Gene Structure 1948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G45233.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGCAATCGGAGATGGCGATAGACACGGTGGCCACGGCGGAGAAATCACCACTAGAGCTACTTCAACAAACCAAAGCCTCCGTCGAAGCAATCATAGCAAAGATGCTCTCCATCAAGCAACAAGGAACCCCTAAATCCGAGAATCGAGAACTCCTCACTCAGATGTTTCTCAACTTCATCAATCTTCGTCAAGCGAATCGCTCGATTCTTATAGAAGAAGAGAAAGTGAGAACAGAAACGGAAATAGCAAAATCTCCGGTGGATTTCACGACGTTGGAGCTTCACAATCTCATGTATGAGAAGAGTCATTACCTCAAAGCTAATAAAGCTAGTAGAGATTTCAAATCTAGGTATCCAAACATCGATCTCATATCCGAACAAGACTTCTTCAGTGATGCTCCCGAAGCAATCAAATCTCAAACGTTATCAAATGATAGTTCTCATGATTTGATGCTTAAAAGACTCAATTTTGAGCTTCATCAGAGGAAAGAGCTATGCAAGCTTAGAGTGAGGTTGGAGCAACAGAAGAAGAGTTTACTTGAAAGTAATGCGGAGAGGAACAAGTTTCTGTCAAGTCTTCCAGTGCATCTCAAATCTCTAAAGAAAGCATCTTTGCCAGTACAGAGCCAGTTGAGTTTGCAGAATCAGAAGAAGCTGAAGTATCATAATCTAGCTGAGCTTCTTCCTCCGCCGCTTTATGTTATATATTCGCAGTTCATGGCACTGAAGGAAGCTTTCGAAGAGAATATCGATGTTGAGGTATCTGGGAGTCTTAAGGATGCTCAAACTTATGCGCGGCAGCAAGCAGAACAGAACTCAGAGAGTCTAAGATTAGAGGTTGGTGTTGATGAAGAAAGGCAAAGGAAACGACTCAAGAAAGTGGGTTCTGATGAGGGAGGAGTATATCAAGTTCATCCTCTTAAAGTTGTCCTTCATGTTTATGATGACGAGATTACAGATCCGAAATCTCATGAACTTGTCATGCTCAAGTTTGAGTACTTGTTGAAGTTGAATGTTGTATGTGTTGGCATTGAAGAGTCTGAGGATGGACTTGAGAAAAATATACTATGTAACTTATTTCCAGACGATTCTGGACTTGAGCCTCCTCATCAGTCAGCCAAGCTCATTCTTGGCAACGATCATGTGTTTGATAAAAGCAGAACTTCGAGGCCATATAAGTGGGCACAACATTTGGCGGGGATTGAGACTTTACCTGAAATGTCACCATTTTTTACTGACAAGGATATTCAATATAGTGATACAGCTAAAGGCTATGCTTCTGCTTCTGATCACCGCAATGTGCAAACCGTTCTGCAAAGAATACGGTCCCAGAAAAAGACTAAGCTAACGCTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0015931 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031974 GO:0031981 GO:0032784 GO:0032786 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

FimP

Protein Analysis

452

Amino Acids

51.81

Weight (kDa)

6.7

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FmiP_Thoc5	PF09766	61 - 402	1.7e-103	Fms-interacting protein/Thoc5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45233 AT5G42920 AT5G42920
fragaria_vesca	FvH4_2g34320 FvH4_2g34320
malus_domestica	MD15G1081700.v1.1
prunus_persica	Prupe.1G434400_v2.0.a1
pyrus_communis	pycom08g08080 pycom15g07640
rosa_chinensis	RchiOBHm_Chr6g0308041
rosa_laevigata	RLG00000010673
rosa_multiflora	Rmu_co8496519.1_g000001 Rmu_sc0002624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160640
rosa_rugosa	Rorug06G0363300
rosa_samantha	Rh6AG472200 Rh6BG483200 Rh6CG488300 Rh6DG474600
rosa_wichuraiana	Rw6G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	796
AciI	CCGC	7 cut(s)	38, 551, 689, 692, 796, 1196, 1294
AclI	AACGTT	1 cut(s)	422
AclWI	GGATC	1 cut(s)	953
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	3 cut(s)	373, 677, 746
AfaI	GTAC	2 cut(s)	621, 998
AflII	CTTAAG	1 cut(s)	773
AgsI	TTSAA	7 cut(s)	65, 343, 542, 1006, 1012, 1034, 1250
Alw26I	GTCTC	1 cut(s)	1199
AlwI	GGATC	1 cut(s)	953
AoxI	GGCC	2 cut(s)	30, 1169
ApeKI	GCWGC	1 cut(s)	799
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	1 cut(s)	1326
AsuHPI	GGTGA	3 cut(s)	39, 1215, 1283
AsuII	TTCGAA	1 cut(s)	738
AvaII	GGWCC	1 cut(s)	1326
BaeGI	GKGCMC	1 cut(s)	1186
BalI	TGGCCA	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	293, 325
BbsI	GAAGAC	1 cut(s)	569
BbvI	GCAGC	1 cut(s)	811
BccI	CCATC	3 cut(s)	7, 119, 1040
BceAI	ACGGC	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	363
BclI	TGATCA	1 cut(s)	1288
BcoDI	GTCTC	1 cut(s)	1199
BfaI	CTAG	4 cut(s)	53, 330, 348, 671
BfrI	CTTAAG	1 cut(s)	773
BfuI	GTATCC	1 cut(s)	363
BisI	GCNGC	3 cut(s)	692, 797, 800
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	3 cut(s)	693, 798, 801
BmcAI	AGTACT	1 cut(s)	998
Bme18I	GGWCC	1 cut(s)	1326
BmgT120I	GGNCC	1 cut(s)	1326
BmiI	GGNNCC	2 cut(s)	127, 1328
BmsI	GCATC	6 cut(s)	93, 385, 441, 595, 617, 769
BpiI	GAAGAC	1 cut(s)	569
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
Bpu1102I	GCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	738
BpuEI	CTTGAG	4 cut(s)	857, 971, 1073, 1118
Bsa29I	ATCGAT	2 cut(s)	363, 750
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	256
Bse1I	ACTGG	3 cut(s)	581, 617, 628
Bse3DI	GCAATG	1 cut(s)	1303
BseCI	ATCGAT	2 cut(s)	363, 750
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	784, 913, 1051
BseMI	GCAATG	1 cut(s)	1303
BseMII	CTCAG	4 cut(s)	173, 666, 831, 1032
BseNI	ACTGG	3 cut(s)	581, 617, 628
BseRI	GAGGAG	3 cut(s)	143, 912, 1095
BseSI	GKGCMC	1 cut(s)	1186
BseXI	GCAGC	1 cut(s)	811
Bsh1236I	CGCG	1 cut(s)	796
BshFI	GGCC	2 cut(s)	32, 1171
BshVI	ATCGAT	2 cut(s)	363, 750
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	1312
BsmAI	GTCTC	1 cut(s)	1199
BsmFI	GGGAC	1 cut(s)	1312
BsnI	GGCC	2 cut(s)	32, 1171
Bsp119I	TTCGAA	1 cut(s)	738
Bsp1286I	GDGCHC	1 cut(s)	1186
Bsp143I	GATC	4 cut(s)	364, 958, 1138, 1288
Bsp1720I	GCTNAGC	1 cut(s)	675
BspACI	CCGC	7 cut(s)	38, 551, 689, 692, 796, 1196, 1294
BspANI	GGCC	2 cut(s)	32, 1171
BspCNI	CTCAG	4 cut(s)	172, 667, 830, 1033
BspDI	ATCGAT	2 cut(s)	363, 750
BspFNI	CGCG	1 cut(s)	796
BspHI	TCATGA	2 cut(s)	442, 970
BspLI	GGNNCC	2 cut(s)	127, 1328
BspPI	GGATC	1 cut(s)	953
BspT104I	TTCGAA	1 cut(s)	738
BspTI	CTTAAG	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	1303
BsrI	ACTGG	3 cut(s)	581, 617, 628
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	4 cut(s)	364, 958, 1138, 1288
Bst4CI	ACNGT	3 cut(s)	28, 1309, 1326
Bst6I	CTCTTC	5 cut(s)	213, 296, 524, 735, 1029
BstAFI	CTTAAG	1 cut(s)	773
BstBI	TTCGAA	1 cut(s)	738
BstC8I	GCNNGC	2 cut(s)	500, 804
BstDEI	CTNAG	7 cut(s)	159, 503, 675, 817, 827, 1041, 1341
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	784, 913, 1051
BstFNI	CGCG	1 cut(s)	796
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	4 cut(s)	367, 961, 1141, 1291
BstMAI	GTCTC	1 cut(s)	1199
BstMBI	GATC	4 cut(s)	364, 958, 1138, 1288
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 326, 404, 499
BstSLI	GKGCMC	1 cut(s)	1186
BstUI	CGCG	1 cut(s)	796
BstV1I	GCAGC	1 cut(s)	811
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	1 cut(s)	958
BstXI	CCANNNNNNTGG	1 cut(s)	1179
BstYI	RGATCY	1 cut(s)	958
Bsu15I	ATCGAT	2 cut(s)	363, 750
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	32, 1171
BsuTUI	ATCGAT	2 cut(s)	363, 750
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	784, 913, 1051
BtsIMutI	CAGTG	3 cut(s)	397, 588, 722
Cac8I	GCNNGC	2 cut(s)	500, 804
CciI	TCATGA	2 cut(s)	442, 970
CfoI	GCGC	1 cut(s)	796
Cfr13I	GGNCC	1 cut(s)	1326
ClaI	ATCGAT	2 cut(s)	363, 750
Csp6I	GTAC	2 cut(s)	620, 997
CviAII	CATG	7 cut(s)	292, 443, 718, 935, 971, 982, 1142
CviQI	GTAC	2 cut(s)	620, 997
DdeI	CTNAG	7 cut(s)	159, 503, 675, 817, 827, 1041, 1341
DpnI	GATC	4 cut(s)	366, 960, 1140, 1290
DpnII	GATC	4 cut(s)	364, 958, 1138, 1288
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	5 cut(s)	213, 296, 524, 735, 1029
EarI	CTCTTC	5 cut(s)	213, 296, 524, 735, 1029
EciI	GGCGGA	2 cut(s)	53, 678
Eco47I	GGWCC	1 cut(s)	1326
Eco57I	CTGAAG	3 cut(s)	373, 677, 746
FaeI	CATG	7 cut(s)	295, 446, 721, 938, 974, 985, 1145
FalI	AAGNNNNNCTT	4 cut(s)	915, 947, 1147, 1179
FaqI	GGGAC	1 cut(s)	1312
FatI	CATG	7 cut(s)	291, 442, 717, 934, 970, 981, 1141
FauI	CCCGC	1 cut(s)	1189
FbaI	TGATCA	1 cut(s)	1288
Fnu4HI	GCNGC	3 cut(s)	692, 797, 800
FokI	GGATG	3 cut(s)	791, 900, 1058
Fsp4HI	GCNGC	3 cut(s)	692, 797, 800
FspBI	CTAG	4 cut(s)	53, 330, 348, 671
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	3 cut(s)	692, 797, 800
HaeIII	GGCC	2 cut(s)	32, 1171
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	1 cut(s)	796
Hin1II	CATG	7 cut(s)	295, 446, 721, 938, 974, 985, 1145
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HindIII	AAGCTT	2 cut(s)	500, 732
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	3 cut(s)	39, 1215, 1283
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188III	TCNNGA	8 cut(s)	146, 268, 401, 443, 874, 971, 1082, 1092
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	2 cut(s)	86, 274
HpyAV	CCTTC	2 cut(s)	721, 941
HpyCH4III	ACNGT	3 cut(s)	28, 1309, 1326
HpyCH4IV	ACGT	2 cut(s)	272, 422
HpyCH4V	TGCA	6 cut(s)	4, 498, 586, 640, 1303, 1315
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 326, 404, 499
HpyF3I	CTNAG	7 cut(s)	159, 503, 675, 817, 827, 1041, 1341
HpySE526I	ACGT	2 cut(s)	272, 422
Hsp92II	CATG	7 cut(s)	295, 446, 721, 938, 974, 985, 1145
HspAI	GCGC	1 cut(s)	794
Ksp22I	TGATCA	1 cut(s)	1288
Kzo9I	GATC	4 cut(s)	364, 958, 1138, 1288
LmnI	GCTCC	3 cut(s)	277, 403, 517
LpnPI	CCDG	9 cut(s)	270, 594, 630, 641, 750, 1077, 1095, 1227, 1343
Lsp1109I	GCAGC	1 cut(s)	811
LweI	GCATC	6 cut(s)	93, 385, 441, 595, 617, 769
MaeI	CTAG	4 cut(s)	53, 330, 348, 671
MaeII	ACGT	2 cut(s)	272, 422
MaeIII	GTNAC	2 cut(s)	1070, 1221
MalI	GATC	4 cut(s)	366, 960, 1140, 1290
MboI	GATC	4 cut(s)	364, 958, 1138, 1288
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	1 cut(s)	1186
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	1 cut(s)	466
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	6 cut(s)	313, 456, 778, 832, 864, 1046
MmeI	TCCRAC	2 cut(s)	255, 495
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	3 cut(s)	456, 774, 921
MslI	CAYNNNNRTG	4 cut(s)	161, 939, 1177, 1296
Msp20I	TGGCCA	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	773
MspI	CCGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	796
MwoI	GCNNNNNNNGC	4 cut(s)	95, 326, 404, 499
NdeII	GATC	4 cut(s)	364, 958, 1138, 1288
NlaIII	CATG	7 cut(s)	295, 446, 721, 938, 974, 985, 1145
NlaIV	GGNNCC	2 cut(s)	127, 1328
NmuCI	GTSAC	1 cut(s)	1221
NspV	TTCGAA	1 cut(s)	738
PagI	TCATGA	2 cut(s)	442, 970
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	5 cut(s)	142, 196, 205, 643, 1088
PkrI	GCNGC	3 cut(s)	693, 798, 801
PleI	GAGTC	6 cut(s)	312, 456, 777, 831, 864, 1045
PpsI	GAGTC	6 cut(s)	312, 456, 777, 831, 864, 1045
Psp1406I	AACGTT	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	127, 1328
PspPI	GGNCC	1 cut(s)	1326
PsrI	GAACNNNNNNTAC	2 cut(s)	894, 926
PsuI	RGATCY	1 cut(s)	958
RsaI	GTAC	2 cut(s)	621, 998
RsaNI	GTAC	2 cut(s)	620, 997
RseI	CAYNNNNRTG	4 cut(s)	161, 939, 1177, 1296
SaqAI	TTAA	3 cut(s)	456, 774, 921
SatI	GCNGC	3 cut(s)	692, 797, 800
Sau3AI	GATC	4 cut(s)	364, 958, 1138, 1288
Sau96I	GGNCC	1 cut(s)	1326
ScaI	AGTACT	1 cut(s)	998
SchI	GAGTC	6 cut(s)	313, 456, 778, 832, 864, 1046
SduI	GDGCHC	1 cut(s)	1186
SfaNI	GCATC	6 cut(s)	93, 385, 441, 595, 617, 769
SfuI	TTCGAA	1 cut(s)	738
SinI	GGWCC	1 cut(s)	1326
SmiMI	CAYNNNNRTG	4 cut(s)	161, 939, 1177, 1296
SmlI	CTYRAG	5 cut(s)	773, 872, 986, 1052, 1097
SmoI	CTYRAG	5 cut(s)	773, 872, 986, 1052, 1097
Sse9I	AATT	1 cut(s)	466
SsiI	CCGC	7 cut(s)	38, 551, 689, 692, 796, 1196, 1294
SspMI	CTAG	4 cut(s)	53, 330, 348, 671
TaaI	ACNGT	3 cut(s)	28, 1309, 1326
TaiI	ACGT	2 cut(s)	275, 425
TaqI	TCGA	7 cut(s)	84, 145, 203, 363, 738, 750, 1166
TasI	AATT	1 cut(s)	466
TatI	WGTACW	2 cut(s)	619, 996
TauI	GCSGC	2 cut(s)	694, 799
TfiI	GAWTC	5 cut(s)	142, 196, 205, 643, 1088
Tru1I	TTAA	3 cut(s)	456, 774, 921
Tru9I	TTAA	3 cut(s)	456, 774, 921
TscAI	CASTG	3 cut(s)	397, 588, 729
TseFI	GTSAC	1 cut(s)	1221
TseI	GCWGC	1 cut(s)	799
Tsp45I	GTSAC	1 cut(s)	1221
TspDTI	ATGAA	7 cut(s)	166, 467, 706, 864, 902, 923, 987
TspGWI	ACGGA	2 cut(s)	70, 254
TspRI	CASTG	3 cut(s)	397, 588, 729
Vha464I	CTTAAG	1 cut(s)	773
VpaK11BI	GGWCC	1 cut(s)	1326
XspI	CTAG	4 cut(s)	53, 330, 348, 671
ZrmI	AGTACT	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.