Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011338

Physical Location & Seq

Genomic Coordinates Reverse (-)

65460638 .. 65464802

Gene Structure 4165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG472200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGGAAGACGAGGAAATAGAGGAGGGGATGCTGGTGGAGGAAGAAGCTGCTCCGCCGCAGCCGGAGAAGTCGCCGTACGAAGTTTTGCGAGAGAGCAAATCGTCGGTGGAAAACGTGGTGGCCAAAATGCTCTCGATTAAAAAAGAAGCCAAACCTAAATCGGAGCTCCGTGAGCTCGTCACTCAGATGTTCCTGAACTTCGTCACCCTCCGCCAGGCGAACCGTTCGATCTTGCTTGAGGAGGACCGCGTGAAATCGGAGACGGAGAGCGCAAAGACTCCGGTGGACTTGACGACGTTGCAGCTTCACAATTTGATGTACGAGAAGAGTCACTACGTGAAGGCCATCAAAGCTTGCAAAGACTTCAAGTCCAAGTACCCGGACATTGACCTTGTGCCGGAAGAAGAGTTCTTCCGAGATGCTCCTGCTAATATCAAAGAGCCTACATTGTCGAACGACGCTGCGCAGGACCTGATGCTCAAGAGGCTCAATTTCGAACTGTTTCAGCGCAAAGAGCTGTGTAAGCTTAATGAGAAGCTGGAGATACATAAGAAGGGTTTGCAGGAGACTATTGCGAATCGAAAGAAGTTCTTGAACAGTCTTCCCTCGCACCTCAAGTCTCTGAAGAAGGCGTCACTGCCGGTGCAGAACCAGTTTGGGAATATGCATACCAAGAAGCTCAAGCAGCACCACTCAGCCGAGTTGCTGCCACCGCCTCTGTATGTGGTTTACTCGCAGTTCTCGGCGCAGAAGGAAGCATTTGAAGAAAAGATTGATTTGGAGATAGTAGGAAGTGTGAAGGATGCTCAAGCTTTTGCCCGCCAACAAGCAAATAGAGACACAGGTGTTTCTACAAAAGGAGAGACTAGTAGGTTAGAGGATGATGCACCAGATGAGGAAGATGATGGGCAGAGAAGGAGAAAGAGGCCCAAGAGAGCCCCAACCAAGCAGAACCCTGATCAATCAGGAGTATATCAAGTGCACCCATTGAAAGTTATCCTTAATGTTTATGACGATGAAGCTTCTGATCCCAAGTCTGCAAAACTTATAACCCTCAAGTTTGAGTATTTGTTGAAGATGAATGTTGTATGTGTTGGAGTTGAAGGATCTCATGAGGCAGCGGAGAATAACATCTTATGCAACCTATTCCCAGATGACACTGGCCTTGAGCTTCCCCATCAGTCAGCCAAGCTCATTGTTGATGAGACTCCTGCATTTGATGAAAAGAGAACGTCCCGTCCATATAAGTGGGCCCAGCATTTGGCTGGAATTGATTTATTGCCTGAGGTGTCACCTTTGCTTGCTGTCCATGATGCTCCAACTAGTGACATAACTAAAACTGAGGCTATCATGTCTGGTCTGTCACTTTATCGCCAGCAAAGTCGAGTACAGACAGTTGTGCAAAGAATTCGCTCTCGGAAGAAAGCTCAGATGGCTCTCGTGGAACAGCTTGAATCACTCATGAAGCTTAAATGGCCGGCTTTGTCTTGGGAAAGTGTTCCATGGGCTTTGCATGCTCCTTTGTGCAGATTGCATGGTTGTTCACCTGTAGGACCTCCCCCTAATCTGGCATCATCTTTGCCGGTCATAGATAAGGAGCAGGTTCAGGAACCTATAGATGCTGATTCGGTTGGGCAATCTGGTTCTTCAAAAGAAGAGTTGGAGAGTATGAGGGAAGATGGGGAACTTCCATCTTTGGTTCAAGTTGCATCGGTCAGTGATGATAAACTTGTTCAGCACAAAGGAGACTCCAGGAGGGGGATATCATTACTTTCAAAAAGACCTCCTGTCAGTAAGGCAAAGCCACTAAGTTATAAAAGACATAATGAAGAATTAGATTTTTTGCTGGATACTGAGAGTGATGTGGATGAACCTGCACATATTGTGCCAGAAGAAGAAAGTGGGGTGCCTATTCAATGTTTTGAGGTAGCTGGAAAGTCATGGGTGGATTTTGGGGCAAGGGAATTTCGTCTTGTTTTAACCAGGAGTATAGACTTAGAGAAGAGGAATGTGAAATTAGAAGCCAAGATTAAGATCAGCATGGAGTATCCTTTGAGGCCTCCCTTTTTTACATTGAGTATTTGCACTATGTCTGGAGAAAACCTTTACGAAAGTGATGATTCTGAGTTGTACAATGAACTTCGTGCAATGGAAGCAGAGGTCAATCTTCACATAGTGAAGATGTTACCTCAAAATGAAGATGTTAACATCTTAGGTCATCAAGTTTGTTGTCTAGCAATGTTGTTTGACTATTACATGGATGAGGCATCCCCATCTTCTGAGAAGAGACAGAGTACTTCGGTGGTTGATGTTGGATTGTGTAAGCCTGTTAGTGGTCAGCTTATTGCCAGATCATTTAGAGGAAGGGATCGCAGGAAGATGATATCCTGGAAGGACATGGAATGCACTCCTGGCTATCCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0015931 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031974 GO:0031981 GO:0032784 GO:0032786 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

FimP

Protein Analysis

808

Amino Acids

91.5

Weight (kDa)

5.64

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FmiP_Thoc5	PF09766	69 - 425	1.7e-111	Fms-interacting protein/Thoc5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45233 AT5G42920 AT5G42920
fragaria_vesca	FvH4_2g34320 FvH4_2g34320
malus_domestica	MD15G1081700.v1.1
prunus_persica	Prupe.1G434400_v2.0.a1
pyrus_communis	pycom08g08080 pycom15g07640
rosa_chinensis	RchiOBHm_Chr6g0308041
rosa_laevigata	RLG00000010673
rosa_multiflora	Rmu_co8496519.1_g000001 Rmu_sc0002624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160640
rosa_rugosa	Rorug06G0363300
rosa_samantha	Rh6AG472200 Rh6BG483200 Rh6CG488300 Rh6DG474600
rosa_wichuraiana	Rw6G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1049, 1815
Acc16I	TGCGCA	1 cut(s)	465
Acc36I	ACCTGC	2 cut(s)	1591, 1882
AccB1I	GGYRCC	1 cut(s)	1906
AccB7I	CCANNNNNTGG	1 cut(s)	1261
AccII	CGCG	1 cut(s)	249
AciI	CCGC	7 cut(s)	53, 56, 211, 247, 713, 820, 1121
AclWI	GGATC	3 cut(s)	1022, 1114, 2376
AcoI	YGGCCR	2 cut(s)	120, 1475
AcsI	RAATTY	2 cut(s)	1407, 1964
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	1 cut(s)	632
AdeI	CACNNNGTG	2 cut(s)	337, 2176
AfaI	GTAC	6 cut(s)	77, 320, 377, 1389, 2132, 2296
AfiI	CCNNNNNNNGG	6 cut(s)	214, 397, 1261, 1567, 1758, 2333
AhdI	GACNNNNNGTC	2 cut(s)	367, 1787
AhlI	ACTAGT	2 cut(s)	866, 1322
AjnI	CCWGG	5 cut(s)	213, 1751, 1982, 2387, 2410
AloI	GAACNNNNNNTCC	4 cut(s)	392, 424, 1222, 1254
Alw21I	GWGCWC	3 cut(s)	168, 177, 984
Alw26I	GTCTC	8 cut(s)	254, 560, 624, 831, 857, 1199, 1740, 2281
Alw44I	GTGCAC	1 cut(s)	980
AlwI	GGATC	3 cut(s)	1022, 1114, 2376
AlwNI	CAGNNNCTG	1 cut(s)	472
AoxI	GGCC	7 cut(s)	120, 342, 926, 1162, 1251, 1475, 2057
ApaI	GGGCCC	1 cut(s)	1255
ApaLI	GTGCAC	1 cut(s)	980
ApeKI	GCWGC	7 cut(s)	47, 58, 301, 461, 685, 706, 1118
ApoI	RAATTY	2 cut(s)	1407, 1964
Asp700I	GAANNNNTTC	2 cut(s)	501, 1497
AspLEI	GCGC	4 cut(s)	272, 466, 510, 748
AspS9I	GGNCC	6 cut(s)	244, 469, 927, 1251, 1252, 1553
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	3 cut(s)	196, 1284, 1536
AsuII	TTCGAA	1 cut(s)	495
AvaII	GGWCC	3 cut(s)	244, 469, 1553
AxyI	CCTNAGG	1 cut(s)	1284
BaeGI	GKGCMC	2 cut(s)	984, 1255
BalI	TGGCCA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	1906
BanII	GRGCYC	4 cut(s)	168, 177, 940, 1255
BarI	GAAGNNNNNNTAC	4 cut(s)	59, 91, 317, 349
BauI	CACGAG	1 cut(s)	1439
BbsI	GAAGAC	2 cut(s)	12, 593
Bbv12I	GWGCWC	3 cut(s)	168, 177, 984
BbvI	GCAGC	7 cut(s)	34, 70, 313, 448, 693, 697, 1130
BccI	CCATC	7 cut(s)	353, 899, 1185, 1426, 1673, 1699, 2281
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	1391, 1425
BciT130I	CCWGG	5 cut(s)	215, 1753, 1984, 2389, 2412
BciVI	GTATCC	2 cut(s)	1843, 2058
BclI	TGATCA	1 cut(s)	958
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	8 cut(s)	254, 560, 624, 831, 857, 1199, 1740, 2281
BcuI	ACTAGT	2 cut(s)	866, 1322
BfaI	CTAG	3 cut(s)	867, 1323, 2234
BfmI	CTRYAG	2 cut(s)	1548, 1614
BfuAI	ACCTGC	2 cut(s)	1591, 1882
BfuI	GTATCC	2 cut(s)	1843, 2058
BisI	GCNGC	8 cut(s)	48, 56, 59, 302, 462, 686, 707, 1119
BlsI	GCNGC	8 cut(s)	49, 57, 60, 303, 463, 687, 708, 1120
BmcAI	AGTACT	1 cut(s)	2296
Bme1390I	CCNGG	6 cut(s)	215, 380, 1753, 1984, 2389, 2412
Bme18I	GGWCC	3 cut(s)	244, 469, 1553
BmeRI	GACNNNNNGTC	2 cut(s)	367, 1787
BmgT120I	GGNCC	6 cut(s)	244, 469, 927, 1251, 1252, 1553
BmiI	GGNNCC	3 cut(s)	1253, 1611, 1908
BmrFI	CCNGG	6 cut(s)	215, 380, 1753, 1984, 2389, 2412
BpiI	GAAGAC	2 cut(s)	12, 593
BpmI	CTGGAG	3 cut(s)	560, 1735, 2115
Bpu14I	TTCGAA	1 cut(s)	495
BpuEI	CTTGAG	7 cut(s)	257, 464, 599, 665, 792, 1040, 1187
BpuMI	CCSGG	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	2033
BsaHI	GRCGYC	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	1502
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	6 cut(s)	214, 397, 1261, 1567, 1758, 2333
Bse118I	RCCGGY	3 cut(s)	640, 1477, 1582
Bse1I	ACTGG	2 cut(s)	652, 1165
Bse21I	CCTNAGG	1 cut(s)	1284
Bse3DI	GCAATG	2 cut(s)	2154, 2244
Bse8I	GATNNNNATC	1 cut(s)	2033
BseBI	CCWGG	5 cut(s)	215, 1753, 1984, 2389, 2412
BseDI	CCNNGG	1 cut(s)	1502
BseGI	GGATG	6 cut(s)	33, 808, 886, 1873, 2266, 2267
BseJI	GATNNNNATC	1 cut(s)	2033
BseLI	CCNNNNNNNGG	6 cut(s)	214, 397, 1261, 1567, 1758, 2333
BseMI	GCAATG	2 cut(s)	2154, 2244
BseMII	CTCAG	8 cut(s)	197, 708, 1275, 1332, 1442, 1845, 2115, 2271
BseNI	ACTGG	2 cut(s)	652, 1165
BseRI	GAGGAG	2 cut(s)	35, 254
BseSI	GKGCMC	2 cut(s)	984, 1255
BseXI	GCAGC	7 cut(s)	34, 70, 313, 448, 693, 697, 1130
BseYI	CCCAGC	1 cut(s)	1254
BsgI	GTGCAG	3 cut(s)	665, 1546, 1860
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	7 cut(s)	122, 344, 928, 1164, 1253, 1477, 2059
BshNI	GGYRCC	1 cut(s)	1906
BsiHKAI	GWGCWC	3 cut(s)	168, 177, 984
BsiSI	CCGG	7 cut(s)	62, 281, 380, 398, 641, 1478, 1583
BsiWI	CGTACG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	1219
BslI	CCNNNNNNNGG	6 cut(s)	214, 397, 1261, 1567, 1758, 2333
BsmAI	GTCTC	8 cut(s)	254, 560, 624, 831, 857, 1199, 1740, 2281
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	1219
BsmI	GAATGC	1 cut(s)	2408
BsnI	GGCC	7 cut(s)	122, 344, 928, 1164, 1253, 1477, 2059
Bsp119I	TTCGAA	1 cut(s)	495
Bsp120I	GGGCCC	1 cut(s)	1251
Bsp1286I	GDGCHC	5 cut(s)	168, 177, 940, 984, 1255
Bsp1407I	TGTACA	1 cut(s)	2130
Bsp143I	GATC	7 cut(s)	228, 958, 1027, 1106, 2034, 2351, 2368
Bsp19I	CCATGG	1 cut(s)	1502
BspACI	CCGC	7 cut(s)	53, 56, 211, 247, 713, 820, 1121
BspANI	GGCC	7 cut(s)	122, 344, 928, 1164, 1253, 1477, 2059
BspCNI	CTCAG	8 cut(s)	196, 707, 1276, 1333, 1441, 1846, 2116, 2272
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	2 cut(s)	1111, 1461
BspLI	GGNNCC	3 cut(s)	1253, 1611, 1908
BspMI	ACCTGC	2 cut(s)	1591, 1882
BspPI	GGATC	3 cut(s)	1022, 1114, 2376
BspT104I	TTCGAA	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	1906
BsrDI	GCAATG	2 cut(s)	2154, 2244
BsrFI	RCCGGY	3 cut(s)	640, 1477, 1582
BsrGI	TGTACA	1 cut(s)	2130
BsrI	ACTGG	2 cut(s)	652, 1165
BssAI	RCCGGY	3 cut(s)	640, 1477, 1582
BssECI	CCNNGG	1 cut(s)	1502
BssMI	GATC	7 cut(s)	228, 958, 1027, 1106, 2034, 2351, 2368
BssNI	GRCGYC	1 cut(s)	632
BssSI	CACGAG	1 cut(s)	1439
BssT1I	CCWWGG	1 cut(s)	1502
Bst2BI	CACGAG	1 cut(s)	1439
Bst2UI	CCWGG	5 cut(s)	215, 1753, 1984, 2389, 2412
Bst4CI	ACNGT	4 cut(s)	224, 501, 599, 1396
Bst6I	CTCTTC	5 cut(s)	320, 399, 1650, 1997, 2279
BstACI	GRCGYC	1 cut(s)	632
BstAUI	TGTACA	1 cut(s)	2130
BstBAI	YACGTR	1 cut(s)	337
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	6 cut(s)	355, 820, 1302, 1376, 1479, 1515
BstDSI	CCRYGG	1 cut(s)	1502
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	6 cut(s)	33, 808, 886, 1873, 2266, 2267
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	4 cut(s)	272, 466, 510, 748
BstKTI	GATC	7 cut(s)	231, 961, 1030, 1109, 2037, 2354, 2371
BstMAI	GTCTC	8 cut(s)	254, 560, 624, 831, 857, 1199, 1740, 2281
BstMBI	GATC	7 cut(s)	228, 958, 1027, 1106, 2034, 2351, 2368
BstNI	CCWGG	5 cut(s)	215, 1753, 1984, 2389, 2412
BstNSI	RCATGY	1 cut(s)	1517
BstSCI	CCNGG	6 cut(s)	213, 378, 1751, 1982, 2387, 2410
BstSFI	CTRYAG	2 cut(s)	1548, 1614
BstSLI	GKGCMC	2 cut(s)	984, 1255
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	7 cut(s)	34, 70, 313, 448, 693, 697, 1130
BstV2I	GAAGAC	2 cut(s)	12, 593
BstX2I	RGATCY	1 cut(s)	1106
BstXI	CCANNNNNNTGG	1 cut(s)	1248
BstYI	RGATCY	1 cut(s)	1106
Bsu36I	CCTNAGG	1 cut(s)	1284
BsuI	GTATCC	2 cut(s)	1843, 2058
BsuRI	GGCC	7 cut(s)	122, 344, 928, 1164, 1253, 1477, 2059
BtgI	CCRYGG	1 cut(s)	1502
BtsCI	GGATG	6 cut(s)	33, 808, 886, 1873, 2266, 2267
BtsI	GCAGTG	1 cut(s)	635
BtsIMutI	CAGTG	3 cut(s)	635, 1158, 1723
BveI	ACCTGC	2 cut(s)	1591, 1882
Cac8I	GCNNGC	6 cut(s)	355, 820, 1302, 1376, 1479, 1515
CaiI	CAGNNNCTG	1 cut(s)	472
CciI	TCATGA	2 cut(s)	1111, 1461
CfoI	GCGC	4 cut(s)	272, 466, 510, 748
Cfr10I	RCCGGY	3 cut(s)	640, 1477, 1582
Cfr13I	GGNCC	6 cut(s)	244, 469, 927, 1251, 1252, 1553
CseI	GACGC	2 cut(s)	467, 621
Csp6I	GTAC	6 cut(s)	76, 319, 376, 1388, 2131, 2295
CviQI	GTAC	6 cut(s)	76, 319, 376, 1388, 2131, 2295
DpnI	GATC	7 cut(s)	230, 960, 1029, 1108, 2036, 2353, 2370
DpnII	GATC	7 cut(s)	228, 958, 1027, 1106, 2034, 2351, 2368
DraIII	CACNNNGTG	2 cut(s)	337, 2176
DriI	GACNNNNNGTC	2 cut(s)	367, 1787
EaeI	YGGCCR	2 cut(s)	120, 1475
Eam1104I	CTCTTC	5 cut(s)	320, 399, 1650, 1997, 2279
Eam1105I	GACNNNNNGTC	2 cut(s)	367, 1787
EarI	CTCTTC	5 cut(s)	320, 399, 1650, 1997, 2279
EciI	GGCGGA	2 cut(s)	42, 200
Ecl136II	GAGCTC	2 cut(s)	166, 175
Eco130I	CCWWGG	1 cut(s)	1502
Eco147I	AGGCCT	1 cut(s)	2059
Eco24I	GRGCYC	4 cut(s)	168, 177, 940, 1255
Eco32I	GATATC	2 cut(s)	1764, 2385
Eco47I	GGWCC	3 cut(s)	244, 469, 1553
Eco53kI	GAGCTC	2 cut(s)	166, 175
Eco57I	CTGAAG	1 cut(s)	644
Eco81I	CCTNAGG	1 cut(s)	1284
EcoICRI	GAGCTC	2 cut(s)	166, 175
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	2 cut(s)	469, 1553
EcoRI	GAATTC	1 cut(s)	1407
EcoRII	CCWGG	5 cut(s)	213, 1751, 1982, 2387, 2410
EcoRV	GATATC	2 cut(s)	1764, 2385
EcoT14I	CCWWGG	1 cut(s)	1502
EcoT22I	ATGCAT	1 cut(s)	669
EcoT38I	GRGCYC	4 cut(s)	168, 177, 940, 1255
ErhI	CCWWGG	1 cut(s)	1502
Esp3I	CGTCTC	1 cut(s)	254
FalI	AAGNNNNNCTT	4 cut(s)	575, 607, 984, 1016
FaqI	GGGAC	1 cut(s)	1219
FauI	CCCGC	1 cut(s)	827
FbaI	TGATCA	1 cut(s)	958
Fnu4HI	GCNGC	8 cut(s)	48, 56, 59, 302, 462, 686, 707, 1119
FokI	GGATG	6 cut(s)	40, 815, 893, 1880, 2254, 2273
FriOI	GRGCYC	4 cut(s)	168, 177, 940, 1255
Fsp4HI	GCNGC	8 cut(s)	48, 56, 59, 302, 462, 686, 707, 1119
FspBI	CTAG	3 cut(s)	867, 1323, 2234
FspI	TGCGCA	1 cut(s)	465
GlaI	GCGC	4 cut(s)	271, 465, 509, 747
GluI	GCNGC	8 cut(s)	48, 56, 59, 302, 462, 686, 707, 1119
GsaI	CCCAGC	1 cut(s)	1258
GsuI	CTGGAG	3 cut(s)	560, 1735, 2115
HaeIII	GGCC	7 cut(s)	122, 344, 928, 1164, 1253, 1477, 2059
HapII	CCGG	7 cut(s)	62, 281, 380, 398, 641, 1478, 1583
HgaI	GACGC	2 cut(s)	467, 621
HhaI	GCGC	4 cut(s)	272, 466, 510, 748
Hin1I	GRCGYC	1 cut(s)	632
Hin6I	GCGC	4 cut(s)	270, 464, 508, 746
HinP1I	GCGC	4 cut(s)	270, 464, 508, 746
HincII	GTYRAC	1 cut(s)	2206
HindII	GTYRAC	1 cut(s)	2206
HindIII	AAGCTT	5 cut(s)	351, 524, 810, 1020, 1466
HinfI	GANTC	8 cut(s)	277, 328, 577, 1207, 1454, 1625, 1748, 2120
HpaI	GTTAAC	1 cut(s)	2206
HpaII	CCGG	7 cut(s)	62, 281, 380, 398, 641, 1478, 1583
HphI	GGTGA	3 cut(s)	196, 1284, 1536
Hpy166II	GTNNAC	5 cut(s)	286, 730, 982, 1544, 2206
Hpy188III	TCNNGA	9 cut(s)	133, 193, 481, 592, 966, 1112, 1462, 1607, 2094
Hpy8I	GTNNAC	5 cut(s)	286, 730, 982, 1544, 2206
Hpy99I	CGWCG	3 cut(s)	106, 298, 461
HpyAV	CCTTC	9 cut(s)	334, 547, 622, 745, 793, 909, 1097, 2358, 2386
HpyCH4III	ACNGT	4 cut(s)	224, 501, 599, 1396
HpyCH4IV	ACGT	4 cut(s)	114, 296, 336, 1232
HpySE526I	ACGT	4 cut(s)	114, 296, 336, 1232
Hsp92I	GRCGYC	1 cut(s)	632
HspAI	GCGC	4 cut(s)	270, 464, 508, 746
KroI	GCCGGC	1 cut(s)	1477
KroNI	GCCGGC	1 cut(s)	1479
Ksp22I	TGATCA	1 cut(s)	958
KspAI	GTTAAC	1 cut(s)	2206
Kzo9I	GATC	7 cut(s)	228, 958, 1027, 1106, 2034, 2351, 2368
LmnI	GCTCC	7 cut(s)	55, 163, 171, 427, 1321, 1522, 1597
Lsp1109I	GCAGC	7 cut(s)	34, 70, 313, 448, 693, 697, 1130
MaeI	CTAG	3 cut(s)	867, 1323, 2234
MaeII	ACGT	4 cut(s)	114, 296, 336, 1232
MaeIII	GTNAC	8 cut(s)	178, 202, 329, 633, 1290, 1325, 1362, 2184
MalI	GATC	7 cut(s)	230, 960, 1029, 1108, 2036, 2353, 2370
MboI	GATC	7 cut(s)	228, 958, 1027, 1106, 2034, 2351, 2368
MflI	RGATCY	1 cut(s)	1106
MhlI	GDGCHC	5 cut(s)	168, 177, 940, 984, 1255
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	7 cut(s)	310, 490, 1269, 1407, 1832, 1964, 2015
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	4 cut(s)	271, 337, 1201, 1742
MmeI	TCCRAC	4 cut(s)	1075, 1343, 1641, 2293
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	669
MroNI	GCCGGC	1 cut(s)	1477
MroXI	GAANNNNTTC	2 cut(s)	501, 1497
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	7 cut(s)	138, 528, 1002, 1470, 1979, 2031, 2205
MslI	CAYNNNNRTG	2 cut(s)	185, 1246
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	1121
MspI	CCGG	7 cut(s)	62, 281, 380, 398, 641, 1478, 1583
MspR9I	CCNGG	6 cut(s)	215, 380, 1753, 1984, 2389, 2412
Mva1269I	GAATGC	1 cut(s)	2408
MvaI	CCWGG	5 cut(s)	215, 1753, 1984, 2389, 2412
MvnI	CGCG	1 cut(s)	249
NaeI	GCCGGC	1 cut(s)	1479
NciI	CCSGG	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	1502
NdeII	GATC	7 cut(s)	228, 958, 1027, 1106, 2034, 2351, 2368
NgoMIV	GCCGGC	1 cut(s)	1477
NlaIV	GGNNCC	3 cut(s)	1253, 1611, 1908
NmeAIII	GCCGAG	2 cut(s)	722, 724
NmuCI	GTSAC	7 cut(s)	178, 202, 329, 633, 1290, 1325, 1362
NsbI	TGCGCA	1 cut(s)	465
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	1 cut(s)	1517
NspV	TTCGAA	1 cut(s)	495
PaeI	GCATGC	1 cut(s)	1517
PagI	TCATGA	2 cut(s)	1111, 1461
PceI	AGGCCT	1 cut(s)	2059
PctI	GAATGC	1 cut(s)	2408
PdiI	GCCGGC	1 cut(s)	1479
PdmI	GAANNNNTTC	2 cut(s)	501, 1497
PfeI	GAWTC	4 cut(s)	577, 1454, 1625, 2120
Pfl23II	CGTACG	1 cut(s)	75
PflMI	CCANNNNNTGG	1 cut(s)	1261
PfoI	TCCNGGA	2 cut(s)	1751, 2387
PkrI	GCNGC	8 cut(s)	49, 57, 60, 303, 463, 687, 708, 1120
PleI	GAGTC	4 cut(s)	271, 336, 1201, 1742
PpsI	GAGTC	4 cut(s)	271, 336, 1201, 1742
Ppu21I	YACGTR	1 cut(s)	337
PpuMI	RGGWCCY	2 cut(s)	469, 1553
PsiI	TTATAA	2 cut(s)	1049, 1815
Psp124BI	GAGCTC	2 cut(s)	168, 177
Psp5II	RGGWCCY	2 cut(s)	469, 1553
Psp6I	CCWGG	5 cut(s)	213, 1751, 1982, 2387, 2410
PspFI	CCCAGC	1 cut(s)	1254
PspGI	CCWGG	5 cut(s)	213, 1751, 1982, 2387, 2410
PspLI	CGTACG	1 cut(s)	75
PspN4I	GGNNCC	3 cut(s)	1253, 1611, 1908
PspOMI	GGGCCC	1 cut(s)	1251
PspPI	GGNCC	6 cut(s)	244, 469, 927, 1251, 1252, 1553
PspPPI	RGGWCCY	2 cut(s)	469, 1553
PstNI	CAGNNNCTG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	1106
RsaI	GTAC	6 cut(s)	77, 320, 377, 1389, 2132, 2296
RsaNI	GTAC	6 cut(s)	76, 319, 376, 1388, 2131, 2295
RseI	CAYNNNNRTG	2 cut(s)	185, 1246
SacI	GAGCTC	2 cut(s)	168, 177
SaqAI	TTAA	7 cut(s)	138, 528, 1002, 1470, 1979, 2031, 2205
SatI	GCNGC	8 cut(s)	48, 56, 59, 302, 462, 686, 707, 1119
Sau3AI	GATC	7 cut(s)	228, 958, 1027, 1106, 2034, 2351, 2368
Sau96I	GGNCC	6 cut(s)	244, 469, 927, 1251, 1252, 1553
ScaI	AGTACT	1 cut(s)	2296
SchI	GAGTC	4 cut(s)	271, 337, 1201, 1742
ScrFI	CCNGG	6 cut(s)	215, 380, 1753, 1984, 2389, 2412
SduI	GDGCHC	5 cut(s)	168, 177, 940, 984, 1255
SfcI	CTRYAG	2 cut(s)	1548, 1614
SfuI	TTCGAA	1 cut(s)	495
SinI	GGWCC	3 cut(s)	244, 469, 1553
SmiMI	CAYNNNNRTG	2 cut(s)	185, 1246
SmlI	CTYRAG	7 cut(s)	236, 479, 614, 680, 807, 1055, 1166
SmoI	CTYRAG	7 cut(s)	236, 479, 614, 680, 807, 1055, 1166
SpeI	ACTAGT	2 cut(s)	866, 1322
SphI	GCATGC	1 cut(s)	1517
Sse9I	AATT	7 cut(s)	310, 490, 1269, 1407, 1832, 1964, 2015
SseBI	AGGCCT	1 cut(s)	2059
SsiI	CCGC	7 cut(s)	53, 56, 211, 247, 713, 820, 1121
SspMI	CTAG	3 cut(s)	867, 1323, 2234
SstI	GAGCTC	2 cut(s)	168, 177
StuI	AGGCCT	1 cut(s)	2059
StyD4I	CCNGG	6 cut(s)	213, 378, 1751, 1982, 2387, 2410
StyI	CCWWGG	1 cut(s)	1502
TaaI	ACNGT	4 cut(s)	224, 501, 599, 1396
TaiI	ACGT	4 cut(s)	117, 299, 339, 1235
TaqI	TCGA	6 cut(s)	134, 227, 452, 495, 580, 1384
TaqII	GACCGA	1 cut(s)	1702
TasI	AATT	7 cut(s)	310, 490, 1269, 1407, 1832, 1964, 2015
TatI	WGTACW	3 cut(s)	1387, 2130, 2294
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	4 cut(s)	577, 1454, 1625, 2120
Tru1I	TTAA	7 cut(s)	138, 528, 1002, 1470, 1979, 2031, 2205
Tru9I	TTAA	7 cut(s)	138, 528, 1002, 1470, 1979, 2031, 2205
TscAI	CASTG	3 cut(s)	642, 1165, 1723
TseFI	GTSAC	7 cut(s)	178, 202, 329, 633, 1290, 1325, 1362
TseI	GCWGC	7 cut(s)	47, 58, 301, 461, 685, 706, 1118
Tsp45I	GTSAC	7 cut(s)	178, 202, 329, 633, 1290, 1325, 1362
TspDTI	ATGAA	8 cut(s)	1032, 1094, 1236, 1478, 1842, 1884, 2151, 2211
TspGWI	ACGGA	2 cut(s)	158, 278
TspRI	CASTG	3 cut(s)	642, 1165, 1723
Van91I	CCANNNNNTGG	1 cut(s)	1261
VneI	GTGCAC	1 cut(s)	980
VpaK11BI	GGWCC	3 cut(s)	244, 469, 1553
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	1407, 1964
XceI	RCATGY	1 cut(s)	1517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1262
XmnI	GAANNNNTTC	2 cut(s)	501, 1497
XspI	CTAG	3 cut(s)	867, 1323, 2234
ZrmI	AGTACT	1 cut(s)	2296
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.