Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013461

Physical Location & Seq

Genomic Coordinates Forward (+)

17179250 .. 17180806

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G45474.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCCGTAGTTTTACGTGGAGGCATCACCGGAGGATTTCTTCACCATCGTCGTGACGCTTCATCCGTCATCACAAGAAGAATCTCATCCGTCAAAGCCGCAGGAGGAGGCATCAACCCAACGGTGGCTGTTGAACGTGCCACGTGGCTACCTGGACTAAACCCTCCTCCTTATCTTGATGGAAATTTAGCTGGAGATTACGGGTTTGACCCACTCGGGTTAGGAGAGGATCCGGAAAGCTTGAAGTGGTATGTTCAAGCAGAGCTTGTTCACTCTCGTTTCGCTATGCTCGGTGTTGCAGGAATACTCTTCACTGATCTCCTTCGGACCACAGGGATTCGTAATTTACCGGTTTGGTATGAAGCTGGAGCTGTGAAATTTGATTTTGCTAGTACAAAAACTCTCATAGTTGTACAGTTTCTACTTATGGGGTTTGCTGAGACTAAAAGGTATATGGATTTTGTCTCTCCGGGATCACAAGCCAAAGAAGGATCGTTTTTCTTTGGACTTGAAGCAGCACTCGAGGGGCTCGAGCCTGGATATCCCGGAGGACCGCTTTTAAACCCATTAGGCCTTGCTAAGGATGTTCAAAATGCTCATGACTGGAAGCTTAAGGAGATCAAGAACGGTCGTCTAGCGATGATGGCGATGCTCGGGTTCTTTGTTCAAGCCTCTGTGACTCACACTGGCCCTATTGATAACCTTGTTGAGCATCTCTCTAATCCATGGCATAAGACCATCATTCAAACCCTCTTCACCTCTACATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009521 GO:0009522 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009782 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0046983 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:0098796 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

256

Amino Acids

27.8

Weight (kDa)

6.66

Isoelectric Point (pI)

28.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	55 - 224	3.9e-50	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45474 AT1G45474
fragaria_vesca	FvH4_2g34471 FvH4_2g34471 FvH4_2g34471
malus_domestica	MD15G1083400.v1.1
prunus_persica	Prupe.1G435900_v2.0.a1
pyrus_communis	pycom15g07790
rosa_chinensis	RchiOBHm_Chr6g0307891
rosa_laevigata	RLG00000010689
rosa_multiflora	Rmu_sc0003252.1_g000017
rosa_roxburghii	Rroxscaffold_7G00160780
rosa_rugosa	Rorug06G0361500
rosa_samantha	Rh6AG470500 Rh6BG481500 Rh6CG486900 Rh6DG473000
rosa_wichuraiana	Rw6G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	2 cut(s)	99, 554
AclWI	GGATC	4 cut(s)	224, 237, 481, 499
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	184, 377
AcvI	CACGTG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	394, 414
AfiI	CCNNNNNNNGG	2 cut(s)	124, 580
AflII	CTTAAG	1 cut(s)	611
AgeI	ACCGGT	1 cut(s)	349
AgsI	TTSAA	7 cut(s)	134, 244, 257, 512, 590, 668, 746
AjnI	CCWGG	2 cut(s)	151, 535
AluBI	AGCT	6 cut(s)	191, 240, 265, 365, 371, 610
AluI	AGCT	6 cut(s)	191, 240, 265, 365, 371, 610
Alw26I	GTCTC	2 cut(s)	434, 469
AlwI	GGATC	4 cut(s)	224, 237, 481, 499
Ama87I	CYCGRG	4 cut(s)	215, 521, 530, 653
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	3 cut(s)	3, 571, 688
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	2 cut(s)	184, 377
AsiGI	ACCGGT	1 cut(s)	349
AspS9I	GGNCC	3 cut(s)	327, 551, 689
AsuC2I	CCSGG	2 cut(s)	471, 546
AsuHPI	GGTGA	3 cut(s)	19, 35, 748
AvaI	CYCGRG	4 cut(s)	215, 521, 530, 653
AvaII	GGWCC	2 cut(s)	327, 551
BamHI	GGATCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	531
BbrPI	CACGTG	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	4 cut(s)	54, 173, 637, 746
BciT130I	CCWGG	2 cut(s)	153, 537
BcnI	CCSGG	2 cut(s)	471, 546
BcoDI	GTCTC	2 cut(s)	434, 469
BfaI	CTAG	2 cut(s)	390, 635
BfrI	CTTAAG	1 cut(s)	611
BisI	GCNGC	2 cut(s)	99, 516
BlsI	GCNGC	2 cut(s)	100, 517
Bme1390I	CCNGG	4 cut(s)	153, 471, 537, 546
Bme18I	GGWCC	2 cut(s)	327, 551
BmeT110I	CYCGRG	4 cut(s)	215, 521, 530, 653
BmgT120I	GGNCC	3 cut(s)	327, 551, 689
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	4 cut(s)	153, 471, 537, 546
BmsI	GCATC	4 cut(s)	33, 120, 639, 721
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpmI	CTGGAG	2 cut(s)	213, 387
Bpu10I	CCTNAGC	1 cut(s)	579
BpuMI	CCSGG	2 cut(s)	471, 546
BsaAI	YACGTR	2 cut(s)	17, 144
BsaJI	CCNNGG	1 cut(s)	725
BsaWI	WCCGGW	3 cut(s)	29, 232, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 580
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	2 cut(s)	608, 691
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	153, 537
BseDI	CCNNGG	1 cut(s)	725
BseGI	GGATG	3 cut(s)	62, 86, 589
BseLI	CCNNNNNNNGG	2 cut(s)	124, 580
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	608, 691
BseRI	GAGGAG	2 cut(s)	120, 156
BseXI	GCAGC	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	631
BshFI	GGCC	3 cut(s)	5, 573, 690
BshTI	ACCGGT	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	631
BsiHKCI	CYCGRG	4 cut(s)	215, 521, 530, 653
BsiSI	CCGG	5 cut(s)	30, 233, 350, 470, 546
BslI	CCNNNNNNNGG	2 cut(s)	124, 580
BsmAI	GTCTC	2 cut(s)	434, 469
BsnI	GGCC	3 cut(s)	5, 573, 690
BsoBI	CYCGRG	4 cut(s)	215, 521, 530, 653
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp13I	TCCGGA	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	5 cut(s)	229, 316, 473, 491, 618
Bsp19I	CCATGG	1 cut(s)	725
BspACI	CCGC	2 cut(s)	99, 554
BspANI	GGCC	3 cut(s)	5, 573, 690
BspCNI	CTCAG	1 cut(s)	430
BspEI	TCCGGA	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	4 cut(s)	224, 237, 481, 499
BspTI	CTTAAG	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	349
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	608, 691
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	5 cut(s)	229, 316, 473, 491, 618
BssT1I	CCWWGG	1 cut(s)	725
Bst2UI	CCWGG	2 cut(s)	153, 537
Bst4CI	ACNGT	3 cut(s)	124, 417, 629
Bst6I	CTCTTC	2 cut(s)	314, 758
BstAFI	CTTAAG	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	412
BstBAI	YACGTR	2 cut(s)	17, 144
BstDEI	CTNAG	3 cut(s)	438, 579, 768
BstDSI	CCRYGG	1 cut(s)	725
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	62, 86, 589
BstKTI	GATC	5 cut(s)	232, 319, 476, 494, 621
BstMAI	GTCTC	2 cut(s)	434, 469
BstMBI	GATC	5 cut(s)	229, 316, 473, 491, 618
BstMCI	CGRYCG	1 cut(s)	631
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	2 cut(s)	153, 537
BstSCI	CCNGG	4 cut(s)	151, 469, 535, 544
BstV1I	GCAGC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	5, 573, 690
BtgI	CCRYGG	1 cut(s)	725
BtgZI	GCGATG	2 cut(s)	653, 662
BtsCI	GGATG	3 cut(s)	62, 86, 589
BtsIMutI	CAGTG	2 cut(s)	312, 684
CciI	TCATGA	1 cut(s)	598
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	3 cut(s)	327, 551, 689
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	393, 413
CspAI	ACCGGT	1 cut(s)	349
CviAII	CATG	2 cut(s)	599, 726
CviQI	GTAC	2 cut(s)	393, 413
DdeI	CTNAG	3 cut(s)	438, 579, 768
DpnI	GATC	5 cut(s)	231, 318, 475, 493, 620
DpnII	GATC	5 cut(s)	229, 316, 473, 491, 618
DraI	TTTAAA	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	314, 758
EarI	CTCTTC	2 cut(s)	314, 758
Eco130I	CCWWGG	1 cut(s)	725
Eco147I	AGGCCT	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	531
Eco32I	GATATC	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	327, 551
Eco72I	CACGTG	1 cut(s)	144
Eco88I	CYCGRG	4 cut(s)	215, 521, 530, 653
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoRII	CCWGG	2 cut(s)	151, 535
EcoRV	GATATC	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	725
EcoT38I	GRGCYC	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	725
FaeI	CATG	2 cut(s)	602, 729
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	2 cut(s)	598, 725
Fnu4HI	GCNGC	2 cut(s)	99, 516
FokI	GGATG	3 cut(s)	49, 73, 596
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	2 cut(s)	99, 516
FspBI	CTAG	2 cut(s)	390, 635
GluI	GCNGC	2 cut(s)	99, 516
GsuI	CTGGAG	2 cut(s)	213, 387
HaeIII	GGCC	3 cut(s)	5, 573, 690
HapII	CCGG	5 cut(s)	30, 233, 350, 470, 546
HgaI	GACGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	602, 729
HindIII	AAGCTT	2 cut(s)	238, 608
HinfI	GANTC	3 cut(s)	81, 337, 679
HpaII	CCGG	5 cut(s)	30, 233, 350, 470, 546
HphI	GGTGA	3 cut(s)	19, 35, 748
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	5 cut(s)	53, 176, 233, 599, 622
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	332, 482
HpyCH4III	ACNGT	3 cut(s)	124, 417, 629
HpyCH4IV	ACGT	3 cut(s)	16, 136, 143
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	3 cut(s)	438, 579, 768
HpySE526I	ACGT	3 cut(s)	16, 136, 143
Hsp92II	CATG	2 cut(s)	602, 729
Kpn2I	TCCGGA	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	229, 316, 473, 491, 618
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	4 cut(s)	33, 120, 639, 721
MaeI	CTAG	2 cut(s)	390, 635
MaeII	ACGT	3 cut(s)	16, 136, 143
MaeIII	GTNAC	2 cut(s)	53, 676
MalI	GATC	5 cut(s)	231, 318, 475, 493, 620
MboI	GATC	5 cut(s)	229, 316, 473, 491, 618
MboII	GAAGA	4 cut(s)	32, 90, 301, 745
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	3 cut(s)	184, 343, 377
MlyI	GAGTC	1 cut(s)	673
MroI	TCCGGA	1 cut(s)	232
MseI	TTAA	2 cut(s)	560, 612
MslI	CAYNNNNRTG	1 cut(s)	51
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	5 cut(s)	30, 233, 350, 470, 546
MspR9I	CCNGG	4 cut(s)	153, 471, 537, 546
MvaI	CCWGG	2 cut(s)	153, 537
MwoI	GCNNNNNNNGC	1 cut(s)	644
NciI	CCSGG	2 cut(s)	471, 546
NcoI	CCATGG	1 cut(s)	725
NdeII	GATC	5 cut(s)	229, 316, 473, 491, 618
NlaIII	CATG	2 cut(s)	602, 729
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	53, 676
PaeR7I	CTCGAG	2 cut(s)	521, 530
PagI	TCATGA	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 528
PfeI	GAWTC	2 cut(s)	81, 337
PfoI	TCCNGGA	2 cut(s)	469, 544
PinAI	ACCGGT	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	100, 517
PleI	GAGTC	1 cut(s)	673
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	673
Ppu21I	YACGTR	2 cut(s)	17, 144
Psp6I	CCWGG	2 cut(s)	151, 535
PspCI	CACGTG	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	151, 535
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	3 cut(s)	327, 551, 689
PspXI	VCTCGAGB	2 cut(s)	521, 530
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	2 cut(s)	394, 414
RsaNI	GTAC	2 cut(s)	393, 413
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	560, 612
SatI	GCNGC	2 cut(s)	99, 516
Sau3AI	GATC	5 cut(s)	229, 316, 473, 491, 618
Sau96I	GGNCC	3 cut(s)	327, 551, 689
SchI	GAGTC	1 cut(s)	673
ScrFI	CCNGG	4 cut(s)	153, 471, 537, 546
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	4 cut(s)	33, 120, 639, 721
Sfr274I	CTCGAG	2 cut(s)	521, 530
SinI	GGWCC	2 cut(s)	327, 551
SlaI	CTCGAG	2 cut(s)	521, 530
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	3 cut(s)	521, 530, 611
SmoI	CTYRAG	3 cut(s)	521, 530, 611
Sse9I	AATT	3 cut(s)	184, 343, 377
SseBI	AGGCCT	1 cut(s)	573
SsiI	CCGC	2 cut(s)	99, 554
SspMI	CTAG	2 cut(s)	390, 635
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	4 cut(s)	151, 469, 535, 544
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	3 cut(s)	124, 417, 629
TaiI	ACGT	3 cut(s)	19, 139, 146
TaqI	TCGA	2 cut(s)	522, 531
TasI	AATT	3 cut(s)	184, 343, 377
TatI	WGTACW	2 cut(s)	392, 412
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	81, 337
Tru1I	TTAA	2 cut(s)	560, 612
Tru9I	TTAA	2 cut(s)	560, 612
TscAI	CASTG	2 cut(s)	319, 691
TseFI	GTSAC	2 cut(s)	53, 676
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	2 cut(s)	53, 676
TspDTI	ATGAA	2 cut(s)	51, 375
TspGWI	ACGGA	2 cut(s)	55, 79
TspRI	CASTG	2 cut(s)	319, 691
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	2 cut(s)	327, 551
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	2 cut(s)	184, 377
XhoI	CTCGAG	2 cut(s)	521, 530
XspI	CTAG	2 cut(s)	390, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.