The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G45474 AT1G45474 |
| fragaria_vesca | FvH4_2g34471 FvH4_2g34471 FvH4_2g34471 |
| malus_domestica | MD15G1083400.v1.1 |
| prunus_persica | Prupe.1G435900_v2.0.a1 |
| pyrus_communis | pycom15g07790 |
| rosa_chinensis | RchiOBHm_Chr6g0307891 |
| rosa_laevigata | RLG00000010689 |
| rosa_multiflora | Rmu_sc0003252.1_g000017 |
| rosa_roxburghii | Rroxscaffold_7G00160780 |
| rosa_rugosa | Rorug06G0361500 |
| rosa_samantha | Rh6AG470500 Rh6BG481500 Rh6CG486900 Rh6DG473000 |
| rosa_wichuraiana | Rw6G041080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 389 |
| Acc36I | ACCTGC | 1 cut(s) | 389 |
| AccB1I | GGYRCC | 1 cut(s) | 660 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 756 |
| AccI | GTMKAC | 1 cut(s) | 379 |
| AciI | CCGC | 1 cut(s) | 245 |
| AclWI | GGATC | 1 cut(s) | 514 |
| AcsI | RAATTY | 2 cut(s) | 336, 410 |
| AcuI | CTGAAG | 1 cut(s) | 98 |
| AcvI | CACGTG | 1 cut(s) | 151 |
| AcyI | GRCGYC | 1 cut(s) | 661 |
| AfaI | GTAC | 2 cut(s) | 75, 392 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 151, 670, 756 |
| AflIII | ACRYGT | 1 cut(s) | 148 |
| AgsI | TTSAA | 2 cut(s) | 473, 496 |
| AjnI | CCWGG | 4 cut(s) | 184, 502, 565, 574 |
| AluBI | AGCT | 8 cut(s) | 8, 166, 219, 273, 298, 545, 640, 701 |
| AluI | AGCT | 8 cut(s) | 8, 166, 219, 273, 298, 545, 640, 701 |
| Alw21I | GWGCWC | 1 cut(s) | 744 |
| AlwI | GGATC | 1 cut(s) | 514 |
| AoxI | GGCC | 1 cut(s) | 581 |
| ApeKI | GCWGC | 6 cut(s) | 5, 8, 37, 95, 166, 545 |
| ApoI | RAATTY | 2 cut(s) | 336, 410 |
| AspLEI | GCGC | 3 cut(s) | 157, 171, 663 |
| AspS9I | GGNCC | 3 cut(s) | 262, 581, 719 |
| AsuC2I | CCSGG | 1 cut(s) | 266 |
| AvaII | GGWCC | 2 cut(s) | 262, 719 |
| BanI | GGYRCC | 1 cut(s) | 660 |
| BanII | GRGCYC | 1 cut(s) | 192 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 354, 386 |
| BbrPI | CACGTG | 1 cut(s) | 151 |
| Bbv12I | GWGCWC | 1 cut(s) | 744 |
| BbvI | GCAGC | 5 cut(s) | 17, 49, 107, 153, 532 |
| BccI | CCATC | 3 cut(s) | 206, 454, 515 |
| BciT130I | CCWGG | 4 cut(s) | 186, 504, 567, 576 |
| BcnI | CCSGG | 1 cut(s) | 266 |
| BfaI | CTAG | 1 cut(s) | 551 |
| BfmI | CTRYAG | 1 cut(s) | 9 |
| BfoI | RGCGCY | 1 cut(s) | 664 |
| BfuAI | ACCTGC | 1 cut(s) | 389 |
| BisI | GCNGC | 6 cut(s) | 6, 9, 38, 96, 167, 546 |
| BlsI | GCNGC | 6 cut(s) | 7, 10, 39, 97, 168, 547 |
| Bme1390I | CCNGG | 5 cut(s) | 186, 266, 504, 567, 576 |
| Bme18I | GGWCC | 2 cut(s) | 262, 719 |
| BmgT120I | GGNCC | 3 cut(s) | 262, 581, 719 |
| BmiI | GGNNCC | 5 cut(s) | 182, 264, 526, 662, 720 |
| BmrFI | CCNGG | 5 cut(s) | 186, 266, 504, 567, 576 |
| BmsI | GCATC | 1 cut(s) | 696 |
| BpuEI | CTTGAG | 3 cut(s) | 117, 295, 495 |
| BpuMI | CCSGG | 1 cut(s) | 266 |
| BsaAI | YACGTR | 1 cut(s) | 151 |
| BsaHI | GRCGYC | 1 cut(s) | 661 |
| BsaJI | CCNNGG | 3 cut(s) | 184, 185, 755 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 151, 670, 756 |
| Bse1I | ACTGG | 1 cut(s) | 383 |
| Bse3DI | GCAATG | 2 cut(s) | 324, 675 |
| BseBI | CCWGG | 4 cut(s) | 186, 504, 567, 576 |
| BseDI | CCNNGG | 3 cut(s) | 184, 185, 755 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 151, 670, 756 |
| BseMI | GCAATG | 2 cut(s) | 324, 675 |
| BseMII | CTCAG | 1 cut(s) | 388 |
| BseNI | ACTGG | 1 cut(s) | 383 |
| BseXI | GCAGC | 5 cut(s) | 17, 49, 107, 153, 532 |
| BseYI | CCCAGC | 2 cut(s) | 162, 224 |
| BsgI | GTGCAG | 5 cut(s) | 56, 114, 308, 423, 531 |
| BshFI | GGCC | 1 cut(s) | 583 |
| BshNI | GGYRCC | 1 cut(s) | 660 |
| BsiHKAI | GWGCWC | 1 cut(s) | 744 |
| BsiSI | CCGG | 1 cut(s) | 266 |
| BslFI | GGGAC | 1 cut(s) | 732 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 151, 670, 756 |
| BsmFI | GGGAC | 1 cut(s) | 732 |
| BsmI | GAATGC | 1 cut(s) | 628 |
| BsnI | GGCC | 1 cut(s) | 583 |
| Bsp1286I | GDGCHC | 2 cut(s) | 192, 744 |
| Bsp143I | GATC | 1 cut(s) | 506 |
| Bsp19I | CCATGG | 1 cut(s) | 755 |
| BspACI | CCGC | 1 cut(s) | 245 |
| BspANI | GGCC | 1 cut(s) | 583 |
| BspCNI | CTCAG | 1 cut(s) | 387 |
| BspHI | TCATGA | 1 cut(s) | 628 |
| BspLI | GGNNCC | 5 cut(s) | 182, 264, 526, 662, 720 |
| BspMAI | CTGCAG | 1 cut(s) | 13 |
| BspMI | ACCTGC | 1 cut(s) | 389 |
| BspPI | GGATC | 1 cut(s) | 514 |
| BspT107I | GGYRCC | 1 cut(s) | 660 |
| BsrDI | GCAATG | 2 cut(s) | 324, 675 |
| BsrI | ACTGG | 1 cut(s) | 383 |
| BssECI | CCNNGG | 3 cut(s) | 184, 185, 755 |
| BssMI | GATC | 1 cut(s) | 506 |
| BssNAI | GTATAC | 1 cut(s) | 380 |
| BssNI | GRCGYC | 1 cut(s) | 661 |
| BssT1I | CCWWGG | 1 cut(s) | 755 |
| Bst1107I | GTATAC | 1 cut(s) | 380 |
| Bst2UI | CCWGG | 4 cut(s) | 186, 504, 567, 576 |
| BstACI | GRCGYC | 1 cut(s) | 661 |
| BstBAI | YACGTR | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 5 cut(s) | 110, 159, 291, 310, 699 |
| BstDEI | CTNAG | 1 cut(s) | 374 |
| BstDSI | CCRYGG | 1 cut(s) | 755 |
| BstH2I | RGCGCY | 1 cut(s) | 664 |
| BstHHI | GCGC | 3 cut(s) | 157, 171, 663 |
| BstKTI | GATC | 1 cut(s) | 509 |
| BstMBI | GATC | 1 cut(s) | 506 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 163, 187, 295, 314, 674, 791 |
| BstNI | CCWGG | 4 cut(s) | 186, 504, 567, 576 |
| BstNSI | RCATGY | 2 cut(s) | 116, 161 |
| BstSCI | CCNGG | 5 cut(s) | 184, 264, 502, 565, 574 |
| BstSFI | CTRYAG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 5 cut(s) | 17, 49, 107, 153, 532 |
| BstX2I | RGATCY | 1 cut(s) | 506 |
| BstYI | RGATCY | 1 cut(s) | 506 |
| BstZ17I | GTATAC | 1 cut(s) | 380 |
| BsuRI | GGCC | 1 cut(s) | 583 |
| BtgI | CCRYGG | 1 cut(s) | 755 |
| BtsI | GCAGTG | 1 cut(s) | 18 |
| BtsIMutI | CAGTG | 1 cut(s) | 18 |
| BveI | ACCTGC | 1 cut(s) | 389 |
| Cac8I | GCNNGC | 5 cut(s) | 110, 159, 291, 310, 699 |
| CciI | TCATGA | 1 cut(s) | 628 |
| CfoI | GCGC | 3 cut(s) | 157, 171, 663 |
| Cfr13I | GGNCC | 3 cut(s) | 262, 581, 719 |
| Csp6I | GTAC | 2 cut(s) | 74, 391 |
| CviQI | GTAC | 2 cut(s) | 74, 391 |
| DdeI | CTNAG | 1 cut(s) | 374 |
| DinI | GGCGCC | 1 cut(s) | 662 |
| DpnI | GATC | 1 cut(s) | 508 |
| DpnII | GATC | 1 cut(s) | 506 |
| Eco130I | CCWWGG | 1 cut(s) | 755 |
| Eco24I | GRGCYC | 1 cut(s) | 192 |
| Eco32I | GATATC | 2 cut(s) | 572, 616 |
| Eco47I | GGWCC | 2 cut(s) | 262, 719 |
| Eco57I | CTGAAG | 1 cut(s) | 98 |
| Eco72I | CACGTG | 1 cut(s) | 151 |
| EcoO109I | RGGNCCY | 1 cut(s) | 262 |
| EcoRI | GAATTC | 1 cut(s) | 336 |
| EcoRII | CCWGG | 4 cut(s) | 184, 502, 565, 574 |
| EcoRV | GATATC | 2 cut(s) | 572, 616 |
| EcoT14I | CCWWGG | 1 cut(s) | 755 |
| EcoT38I | GRGCYC | 1 cut(s) | 192 |
| EgeI | GGCGCC | 1 cut(s) | 662 |
| EheI | GGCGCC | 1 cut(s) | 662 |
| ErhI | CCWWGG | 1 cut(s) | 755 |
| FaqI | GGGAC | 1 cut(s) | 732 |
| FauI | CCCGC | 1 cut(s) | 252 |
| FblI | GTMKAC | 1 cut(s) | 379 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 9, 38, 96, 167, 546 |
| FriOI | GRGCYC | 1 cut(s) | 192 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 9, 38, 96, 167, 546 |
| FspBI | CTAG | 1 cut(s) | 551 |
| GlaI | GCGC | 3 cut(s) | 156, 170, 662 |
| GluI | GCNGC | 6 cut(s) | 6, 9, 38, 96, 167, 546 |
| GsaI | CCCAGC | 2 cut(s) | 166, 228 |
| HaeII | RGCGCY | 1 cut(s) | 664 |
| HaeIII | GGCC | 1 cut(s) | 583 |
| HapII | CCGG | 1 cut(s) | 266 |
| HhaI | GCGC | 3 cut(s) | 157, 171, 663 |
| Hin1I | GRCGYC | 1 cut(s) | 661 |
| Hin6I | GCGC | 3 cut(s) | 155, 169, 661 |
| HinP1I | GCGC | 3 cut(s) | 155, 169, 661 |
| HindIII | AAGCTT | 4 cut(s) | 217, 271, 638, 699 |
| HinfI | GANTC | 1 cut(s) | 778 |
| HpaII | CCGG | 1 cut(s) | 266 |
| Hpy166II | GTNNAC | 1 cut(s) | 380 |
| Hpy188I | TCNGA | 3 cut(s) | 64, 536, 777 |
| Hpy188III | TCNNGA | 3 cut(s) | 457, 619, 629 |
| Hpy8I | GTNNAC | 1 cut(s) | 380 |
| HpyAV | CCTTC | 2 cut(s) | 538, 548 |
| HpyCH4IV | ACGT | 2 cut(s) | 72, 150 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 163, 187, 295, 314, 674, 791 |
| HpyF3I | CTNAG | 1 cut(s) | 374 |
| HpySE526I | ACGT | 2 cut(s) | 72, 150 |
| Hsp92I | GRCGYC | 1 cut(s) | 661 |
| HspAI | GCGC | 3 cut(s) | 155, 169, 661 |
| KasI | GGCGCC | 1 cut(s) | 660 |
| Kzo9I | GATC | 1 cut(s) | 506 |
| LmnI | GCTCC | 2 cut(s) | 186, 739 |
| Lsp1109I | GCAGC | 5 cut(s) | 17, 49, 107, 153, 532 |
| LweI | GCATC | 1 cut(s) | 696 |
| MaeI | CTAG | 1 cut(s) | 551 |
| MaeII | ACGT | 2 cut(s) | 72, 150 |
| MaeIII | GTNAC | 1 cut(s) | 361 |
| MalI | GATC | 1 cut(s) | 508 |
| MboI | GATC | 1 cut(s) | 506 |
| MboII | GAAGA | 2 cut(s) | 332, 523 |
| MfeI | CAATTG | 1 cut(s) | 723 |
| MflI | RGATCY | 1 cut(s) | 506 |
| MhlI | GDGCHC | 2 cut(s) | 192, 744 |
| MluCI | AATT | 3 cut(s) | 336, 410, 723 |
| Mly113I | GGCGCC | 1 cut(s) | 661 |
| MlyI | GAGTC | 1 cut(s) | 772 |
| MmeI | TCCRAC | 2 cut(s) | 472, 774 |
| MnlI | CCTC | 5 cut(s) | 17, 141, 253, 270, 606 |
| MseI | TTAA | 4 cut(s) | 590, 642, 651, 799 |
| MslI | CAYNNNNRTG | 1 cut(s) | 692 |
| MspA1I | CMGCKG | 2 cut(s) | 8, 166 |
| MspI | CCGG | 1 cut(s) | 266 |
| MspR9I | CCNGG | 5 cut(s) | 186, 266, 504, 567, 576 |
| MunI | CAATTG | 1 cut(s) | 723 |
| Mva1269I | GAATGC | 1 cut(s) | 628 |
| MvaI | CCWGG | 4 cut(s) | 186, 504, 567, 576 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 163, 187, 295, 314, 674, 791 |
| NarI | GGCGCC | 1 cut(s) | 661 |
| NciI | CCSGG | 1 cut(s) | 266 |
| NcoI | CCATGG | 1 cut(s) | 755 |
| NdeII | GATC | 1 cut(s) | 506 |
| NlaIV | GGNNCC | 5 cut(s) | 182, 264, 526, 662, 720 |
| NspI | RCATGY | 2 cut(s) | 116, 161 |
| PaeI | GCATGC | 1 cut(s) | 161 |
| PagI | TCATGA | 1 cut(s) | 628 |
| PaqCI | CACCTGC | 1 cut(s) | 389 |
| PasI | CCCWGGG | 1 cut(s) | 185 |
| PctI | GAATGC | 1 cut(s) | 628 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 756 |
| PfoI | TCCNGGA | 1 cut(s) | 502 |
| PkrI | GCNGC | 6 cut(s) | 7, 10, 39, 97, 168, 547 |
| PleI | GAGTC | 1 cut(s) | 772 |
| PluTI | GGCGCC | 1 cut(s) | 664 |
| PmaCI | CACGTG | 1 cut(s) | 151 |
| PmlI | CACGTG | 1 cut(s) | 151 |
| PpsI | GAGTC | 1 cut(s) | 772 |
| Ppu21I | YACGTR | 1 cut(s) | 151 |
| PpuMI | RGGWCCY | 1 cut(s) | 262 |
| Psp5II | RGGWCCY | 1 cut(s) | 262 |
| Psp6I | CCWGG | 4 cut(s) | 184, 502, 565, 574 |
| PspCI | CACGTG | 1 cut(s) | 151 |
| PspFI | CCCAGC | 2 cut(s) | 162, 224 |
| PspGI | CCWGG | 4 cut(s) | 184, 502, 565, 574 |
| PspN4I | GGNNCC | 5 cut(s) | 182, 264, 526, 662, 720 |
| PspPI | GGNCC | 3 cut(s) | 262, 581, 719 |
| PspPPI | RGGWCCY | 1 cut(s) | 262 |
| PstI | CTGCAG | 1 cut(s) | 13 |
| PsuI | RGATCY | 1 cut(s) | 506 |
| PvuII | CAGCTG | 2 cut(s) | 8, 166 |
| RsaI | GTAC | 2 cut(s) | 75, 392 |
| RsaNI | GTAC | 2 cut(s) | 74, 391 |
| RseI | CAYNNNNRTG | 1 cut(s) | 692 |
| SaqAI | TTAA | 4 cut(s) | 590, 642, 651, 799 |
| SatI | GCNGC | 6 cut(s) | 6, 9, 38, 96, 167, 546 |
| Sau3AI | GATC | 1 cut(s) | 506 |
| Sau96I | GGNCC | 3 cut(s) | 262, 581, 719 |
| SchI | GAGTC | 1 cut(s) | 772 |
| ScrFI | CCNGG | 5 cut(s) | 186, 266, 504, 567, 576 |
| SduI | GDGCHC | 2 cut(s) | 192, 744 |
| SfaNI | GCATC | 1 cut(s) | 696 |
| SfcI | CTRYAG | 1 cut(s) | 9 |
| SfoI | GGCGCC | 1 cut(s) | 662 |
| SinI | GGWCC | 2 cut(s) | 262, 719 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 692 |
| SmlI | CTYRAG | 3 cut(s) | 132, 274, 510 |
| SmoI | CTYRAG | 3 cut(s) | 132, 274, 510 |
| SphI | GCATGC | 1 cut(s) | 161 |
| Sse9I | AATT | 3 cut(s) | 336, 410, 723 |
| SsiI | CCGC | 1 cut(s) | 245 |
| SspDI | GGCGCC | 1 cut(s) | 660 |
| SspMI | CTAG | 1 cut(s) | 551 |
| StyD4I | CCNGG | 5 cut(s) | 184, 264, 502, 565, 574 |
| StyI | CCWWGG | 1 cut(s) | 755 |
| TaiI | ACGT | 2 cut(s) | 75, 153 |
| TaqI | TCGA | 1 cut(s) | 192 |
| TasI | AATT | 3 cut(s) | 336, 410, 723 |
| Tru1I | TTAA | 4 cut(s) | 590, 642, 651, 799 |
| Tru9I | TTAA | 4 cut(s) | 590, 642, 651, 799 |
| TscAI | CASTG | 1 cut(s) | 18 |
| TseI | GCWGC | 6 cut(s) | 5, 8, 37, 95, 166, 545 |
| TspDTI | ATGAA | 2 cut(s) | 293, 645 |
| TspRI | CASTG | 1 cut(s) | 18 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 756 |
| VpaK11BI | GGWCC | 2 cut(s) | 262, 719 |
| XapI | RAATTY | 2 cut(s) | 336, 410 |
| XceI | RCATGY | 2 cut(s) | 116, 161 |
| XmiI | GTMKAC | 1 cut(s) | 379 |
| XspI | CTAG | 1 cut(s) | 551 |