Rmu_sc0003252.1_g000017

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003252.1
OG0013461
Physical Location & Seq
Reverse (-)
69588 .. 71103
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003252.1_g000017.1.cds

Sequence Viewer

Length: 798 bp
atggcagttgcagcaggaagagctttccttgtgcagccatcttctttatgctttgcttcgcataacaatttaccgaagcattcattgggtaacacaagcacatccttgcttgttaaaccaggaaatgctcgaggttttgcccaacacatggttcgagcccaggtgcgccctacttggcttcctggcctcgaccccccagcatatctggatggaagcttggctggggatttcgggtttgacccacttgggcttggagaggatccggaaagcttgaggtggtatgtgcaggcagagctggttcattgtcgctttgcaatgcttggagttgcaggaattctcctaacagatttgctgcgtgtaacaggagttctcagtataccagtatggtacaatgcaggggcagttaaatttgggttcgccaatacagagactttgatcattgtgcagttccttttgatgggatttgttgaaactaaaagatacatggatttcaagactcctggatctcaagcgaaagatggatccttcttcggactggaagctgcattagaaggtttagaacccgggtatcctggtggtccattgctaaatcctcttggtctggcaaaagatatcaagaatgctcatgagtggaagcttaaagagattaagaatggacggcttgccatggtagccatgctcggcatgtttgtacaagcttctgttactcatgcaggacccgtcgataatcttctgttacacctctcggacccatggcacaggaccattgttcagaccctagctaactctggctcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 map00196
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

265

Amino Acids

28.58

Weight (kDa)

7.1

Isoelectric Point (pI)

22.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45474 AT1G45474
fragaria_vesca FvH4_2g34471 FvH4_2g34471 FvH4_2g34471
malus_domestica MD15G1083400.v1.1
prunus_persica Prupe.1G435900_v2.0.a1
pyrus_communis pycom15g07790
rosa_chinensis RchiOBHm_Chr6g0307891
rosa_laevigata RLG00000010689
rosa_multiflora Rmu_sc0003252.1_g000017
rosa_roxburghii Rroxscaffold_7G00160780
rosa_rugosa Rorug06G0361500
rosa_samantha Rh6AG470500 Rh6BG481500 Rh6CG486900 Rh6DG473000
rosa_wichuraiana Rw6G041080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 148
AccI GTMKAC 1 cut(s) 376
AccIII TCCGGA 1 cut(s) 262
AclWI GGATC 5 cut(s) 254, 267, 511, 516, 529
AcsI RAATTY 2 cut(s) 333, 407
AfaI GTAC 2 cut(s) 389, 693
AfiI CCNNNNNNNGG 2 cut(s) 148, 457
AgsI TTSAA 2 cut(s) 470, 493
AjnI CCWGG 5 cut(s) 118, 159, 181, 499, 571
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 135, 167
AluBI AGCT 8 cut(s) 23, 216, 270, 295, 542, 637, 698, 782
AluI AGCT 8 cut(s) 23, 216, 270, 295, 542, 637, 698, 782
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 5 cut(s) 254, 267, 511, 516, 529
Ama87I CYCGRG 2 cut(s) 129, 563
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 4 cut(s) 11, 34, 352, 542
ApoI RAATTY 2 cut(s) 333, 407
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 4 cut(s) 578, 716, 748, 762
AsuC2I CCSGG 2 cut(s) 564, 565
AvaI CYCGRG 2 cut(s) 129, 563
AvaII GGWCC 4 cut(s) 578, 716, 748, 762
BaeI ACNNNNGTAYC 2 cut(s) 551, 584
BamHI GGATCC 2 cut(s) 259, 521
BanII GRGCYC 1 cut(s) 160
BbvI GCAGC 4 cut(s) 23, 46, 339, 529
BccI CCATC 4 cut(s) 46, 203, 451, 512
BceAI ACGGC 1 cut(s) 674
BciT130I CCWGG 5 cut(s) 120, 161, 183, 501, 573
BciVI GTATCC 1 cut(s) 579
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 2 cut(s) 564, 565
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 779
BfuI GTATCC 1 cut(s) 579
BisI GCNGC 4 cut(s) 12, 35, 353, 543
BlsI GCNGC 4 cut(s) 13, 36, 354, 544
Bme1390I CCNGG 7 cut(s) 120, 161, 183, 501, 564, 565, 573
Bme18I GGWCC 4 cut(s) 578, 716, 748, 762
BmeT110I CYCGRG 2 cut(s) 129, 563
BmgT120I GGNCC 4 cut(s) 578, 716, 748, 762
BmiI GGNNCC 4 cut(s) 261, 523, 718, 750
BmrFI CCNGG 7 cut(s) 120, 161, 183, 501, 564, 565, 573
BpuEI CTTGAG 2 cut(s) 292, 492
BpuMI CCSGG 2 cut(s) 564, 565
BsaJI CCNNGG 4 cut(s) 159, 563, 666, 752
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 457
Bse1I ACTGG 2 cut(s) 380, 540
Bse3DI GCAATG 2 cut(s) 321, 581
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 5 cut(s) 120, 161, 183, 501, 573
BseDI CCNNGG 4 cut(s) 159, 563, 666, 752
BseGI GGATG 2 cut(s) 101, 214
BseLI CCNNNNNNNGG 2 cut(s) 148, 457
BseMI GCAATG 2 cut(s) 321, 581
BseMII CTCAG 1 cut(s) 385
BseNI ACTGG 2 cut(s) 380, 540
BseXI GCAGC 4 cut(s) 23, 46, 339, 529
BseYI CCCAGC 2 cut(s) 196, 221
BsgI GTGCAG 3 cut(s) 53, 305, 464
BshFI GGCC 1 cut(s) 186
BsiHKCI CYCGRG 2 cut(s) 129, 563
BsiSI CCGG 2 cut(s) 263, 564
BslI CCNNNNNNNGG 2 cut(s) 148, 457
BsmAI GTCTC 1 cut(s) 422
BsmI GAATGC 2 cut(s) 79, 625
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 2 cut(s) 129, 563
Bsp1286I GDGCHC 1 cut(s) 160
Bsp13I TCCGGA 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 691
Bsp143I GATC 4 cut(s) 259, 435, 503, 521
Bsp19I CCATGG 2 cut(s) 666, 752
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 384
BspEI TCCGGA 1 cut(s) 262
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 4 cut(s) 261, 523, 718, 750
BspPI GGATC 5 cut(s) 254, 267, 511, 516, 529
BspQI GCTCTTC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 321, 581
BsrGI TGTACA 1 cut(s) 691
BsrI ACTGG 2 cut(s) 380, 540
BssECI CCNNGG 4 cut(s) 159, 563, 666, 752
BssMI GATC 4 cut(s) 259, 435, 503, 521
BssNAI GTATAC 1 cut(s) 377
BssT1I CCWWGG 2 cut(s) 666, 752
Bst1107I GTATAC 1 cut(s) 377
Bst2UI CCWGG 5 cut(s) 120, 161, 183, 501, 573
Bst6I CTCTTC 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 691
BstC8I GCNNGC 2 cut(s) 288, 663
BstDEI CTNAG 1 cut(s) 371
BstDSI CCRYGG 2 cut(s) 666, 752
BstF5I GGATG 2 cut(s) 101, 214
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 4 cut(s) 262, 438, 506, 524
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 4 cut(s) 259, 435, 503, 521
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 292, 671
BstNI CCWGG 5 cut(s) 120, 161, 183, 501, 573
BstNSI RCATGY 1 cut(s) 688
BstSCI CCNGG 7 cut(s) 118, 159, 181, 499, 562, 563, 571
BstV1I GCAGC 4 cut(s) 23, 46, 339, 529
BstX2I RGATCY 3 cut(s) 259, 503, 521
BstYI RGATCY 3 cut(s) 259, 503, 521
BstZ17I GTATAC 1 cut(s) 377
BsuI GTATCC 1 cut(s) 579
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 2 cut(s) 666, 752
BtsCI GGATG 2 cut(s) 101, 214
Cac8I GCNNGC 2 cut(s) 288, 663
CciI TCATGA 1 cut(s) 625
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 4 cut(s) 578, 716, 748, 762
Cfr9I CCCGGG 1 cut(s) 563
Csp6I GTAC 2 cut(s) 388, 692
CviAII CATG 8 cut(s) 148, 484, 626, 667, 676, 685, 710, 753
CviQI GTAC 2 cut(s) 388, 692
DdeI CTNAG 1 cut(s) 371
DpnI GATC 4 cut(s) 261, 437, 505, 523
DpnII GATC 4 cut(s) 259, 435, 503, 521
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 2 cut(s) 666, 752
Eco24I GRGCYC 1 cut(s) 160
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 4 cut(s) 578, 716, 748, 762
Eco88I CYCGRG 2 cut(s) 129, 563
EcoO109I RGGNCCY 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 5 cut(s) 118, 159, 181, 499, 571
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 666, 752
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 2 cut(s) 666, 752
FaeI CATG 8 cut(s) 151, 487, 629, 670, 679, 688, 713, 756
FatI CATG 8 cut(s) 147, 483, 625, 666, 675, 684, 709, 752
FbaI TGATCA 1 cut(s) 435
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 4 cut(s) 12, 35, 353, 543
FokI GGATG 2 cut(s) 88, 221
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 4 cut(s) 12, 35, 353, 543
FspBI CTAG 1 cut(s) 779
GlaI GCGC 1 cut(s) 167
GluI GCNGC 4 cut(s) 12, 35, 353, 543
GsaI CCCAGC 2 cut(s) 200, 225
HaeIII GGCC 1 cut(s) 186
HapII CCGG 2 cut(s) 263, 564
HhaI GCGC 1 cut(s) 168
Hin1II CATG 8 cut(s) 151, 487, 629, 670, 679, 688, 713, 756
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HindIII AAGCTT 4 cut(s) 214, 268, 635, 696
HinfI GANTC 1 cut(s) 496
HpaII CCGG 2 cut(s) 263, 564
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 3 cut(s) 533, 748, 774
Hpy188III TCNNGA 5 cut(s) 206, 263, 493, 616, 626
Hpy8I GTNNAC 1 cut(s) 377
Hpy99I CGWCG 1 cut(s) 725
HpyAV CCTTC 2 cut(s) 535, 545
HpyCH4V TGCA 9 cut(s) 11, 34, 286, 314, 329, 395, 445, 545, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 292, 671
HpyF3I CTNAG 1 cut(s) 371
Hsp92II CATG 8 cut(s) 151, 487, 629, 670, 679, 688, 713, 756
HspAI GCGC 1 cut(s) 166
Kpn2I TCCGGA 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 4 cut(s) 259, 435, 503, 521
LguI GCTCTTC 1 cut(s) 13
Lsp1109I GCAGC 4 cut(s) 23, 46, 339, 529
MaeI CTAG 1 cut(s) 779
MaeIII GTNAC 4 cut(s) 89, 358, 703, 735
MalI GATC 4 cut(s) 261, 437, 505, 523
MboI GATC 4 cut(s) 259, 435, 503, 521
MboII GAAGA 4 cut(s) 30, 33, 520, 722
MflI RGATCY 3 cut(s) 259, 503, 521
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 3 cut(s) 67, 333, 407
MlyI GAGTC 1 cut(s) 490
MnlI CCTC 6 cut(s) 125, 197, 250, 267, 603, 752
MroI TCCGGA 1 cut(s) 262
MseI TTAA 5 cut(s) 114, 405, 639, 648, 796
MspI CCGG 2 cut(s) 263, 564
MspR9I CCNGG 7 cut(s) 120, 161, 183, 501, 564, 565, 573
Mva1269I GAATGC 2 cut(s) 79, 625
MvaI CCWGG 5 cut(s) 120, 161, 183, 501, 573
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 292, 671
NciI CCSGG 2 cut(s) 564, 565
NcoI CCATGG 2 cut(s) 666, 752
NdeII GATC 4 cut(s) 259, 435, 503, 521
NlaIII CATG 8 cut(s) 151, 487, 629, 670, 679, 688, 713, 756
NlaIV GGNNCC 4 cut(s) 261, 523, 718, 750
NmeAIII GCCGAG 1 cut(s) 660
NspI RCATGY 1 cut(s) 688
PaeR7I CTCGAG 1 cut(s) 129
PagI TCATGA 1 cut(s) 625
PciSI GCTCTTC 1 cut(s) 13
PctI GAATGC 2 cut(s) 79, 625
PflMI CCANNNNNTGG 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 4 cut(s) 13, 36, 354, 544
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
PpuMI RGGWCCY 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 716
Psp6I CCWGG 5 cut(s) 118, 159, 181, 499, 571
PspFI CCCAGC 2 cut(s) 196, 221
PspGI CCWGG 5 cut(s) 118, 159, 181, 499, 571
PspN4I GGNNCC 4 cut(s) 261, 523, 718, 750
PspPI GGNCC 4 cut(s) 578, 716, 748, 762
PspPPI RGGWCCY 1 cut(s) 716
PspXI VCTCGAGB 1 cut(s) 129
PsrI GAACNNNNNNTAC 2 cut(s) 351, 383
PsuI RGATCY 3 cut(s) 259, 503, 521
RsaI GTAC 2 cut(s) 389, 693
RsaNI GTAC 2 cut(s) 388, 692
SapI GCTCTTC 1 cut(s) 13
SaqAI TTAA 5 cut(s) 114, 405, 639, 648, 796
SatI GCNGC 4 cut(s) 12, 35, 353, 543
Sau3AI GATC 4 cut(s) 259, 435, 503, 521
Sau96I GGNCC 4 cut(s) 578, 716, 748, 762
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 7 cut(s) 120, 161, 183, 501, 564, 565, 573
SduI GDGCHC 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 129
SinI GGWCC 4 cut(s) 578, 716, 748, 762
SlaI CTCGAG 1 cut(s) 129
SmaI CCCGGG 1 cut(s) 565
SmlI CTYRAG 3 cut(s) 129, 271, 507
SmoI CTYRAG 3 cut(s) 129, 271, 507
Sse9I AATT 3 cut(s) 67, 333, 407
SspMI CTAG 1 cut(s) 779
StyD4I CCNGG 7 cut(s) 118, 159, 181, 499, 562, 563, 571
StyI CCWWGG 2 cut(s) 666, 752
TaqI TCGA 4 cut(s) 130, 154, 189, 723
TasI AATT 3 cut(s) 67, 333, 407
TatI WGTACW 1 cut(s) 691
Tru1I TTAA 5 cut(s) 114, 405, 639, 648, 796
Tru9I TTAA 5 cut(s) 114, 405, 639, 648, 796
TseI GCWGC 4 cut(s) 11, 34, 352, 542
TspDTI ATGAA 2 cut(s) 72, 290
TspMI CCCGGG 1 cut(s) 563
Van91I CCANNNNNTGG 1 cut(s) 148
VpaK11BI GGWCC 4 cut(s) 578, 716, 748, 762
XapI RAATTY 2 cut(s) 333, 407
XceI RCATGY 1 cut(s) 688
XhoI CTCGAG 1 cut(s) 129
XmaI CCCGGG 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 376
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.