FvH4_2g34471

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013461
Physical Location & Seq
Forward (+)
25600008 .. 25601691
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34471.t3

Sequence Viewer

Length: 798 bp
ATGGCAGTCGCAGCAGGAAGGACTTTCCTTGTGCAGCCATCTTCTCTAACCTTTGCTTCGCATAACAATTTACTGAAGCACTCATTTGGTACCACAAACACATCCTTGCTTGTTAAACCAGGAGATGCTAGAGGTTTTGCACGACACATGGTTCGAGCCCAGATGCGCCCTACATGGCTTCCTGGCCTCGACCCCCCAGCATATCTGGATGGAAGCTTGGCTGGGGATTTCGGGTTTGACCCACTTGGGCTTGGAGAGGATCCCGAAAGCTTGAGGTGGTATGTGCAGGCAGAGCTTGTTCACTGTCGCTTTGCAATGCTTGGAGTTGCAGGAATTCTCCTAACAGATTTACTGCGTGTAACAGGACTTCTCAGTATACCAGTTTGGTACAATGCAGGTGCAGTTAAATTTGGCTTCGCCAATACAGAAACTTTGATCATTGTGCAGTTCCTTTTGATGGGATTTGTTGAAACTAAAAGATACATGGATTTCAAGACTCCTGGATCTCAGGCACAAGATGGATCCTTCTTCGGACTGGAAGCTGCATTAGAAGGCTTAGAACCTGGGTACCCTGGTGGTCCATTGCTGAACCCTCTTGGTCTGGCGAAAGATATCAAGAATGCTCACGAGTGGAAGCTTAAAGAGATTAAGAATGGACGGCTCGCCATGGTAGCCATGCTCGGCATGTTTGTGCAAGCTTCTGTTACTCATGCAGGACCTGTCGATAATCTTCTGCTGCACCTCTCCGACCCATGGCACAGGACCATTGTTCAGACCCTAGCTAACTCTGGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 map00196
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

266

Amino Acids

28.75

Weight (kDa)

6.71

Isoelectric Point (pI)

23.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 65 - 219 1.4e-39 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45474 AT1G45474
fragaria_vesca FvH4_2g34471 FvH4_2g34471 FvH4_2g34471
malus_domestica MD15G1083400.v1.1
prunus_persica Prupe.1G435900_v2.0.a1
pyrus_communis pycom15g07790
rosa_chinensis RchiOBHm_Chr6g0307891
rosa_laevigata RLG00000010689
rosa_multiflora Rmu_sc0003252.1_g000017
rosa_roxburghii Rroxscaffold_7G00160780
rosa_rugosa Rorug06G0361500
rosa_samantha Rh6AG470500 Rh6BG481500 Rh6CG486900 Rh6DG473000
rosa_wichuraiana Rw6G041080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 386
Acc36I ACCTGC 1 cut(s) 386
Acc65I GGTACC 2 cut(s) 89, 567
AccB1I GGYRCC 2 cut(s) 89, 567
AccI GTMKAC 1 cut(s) 376
AclWI GGATC 5 cut(s) 254, 267, 511, 516, 529
AcsI RAATTY 2 cut(s) 333, 407
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 3 cut(s) 91, 389, 569
AfiI CCNNNNNNNGG 2 cut(s) 457, 753
AgsI TTSAA 2 cut(s) 470, 493
AjnI CCWGG 5 cut(s) 118, 181, 499, 562, 571
AluBI AGCT 7 cut(s) 216, 270, 295, 542, 637, 698, 782
AluI AGCT 7 cut(s) 216, 270, 295, 542, 637, 698, 782
AlwI GGATC 5 cut(s) 254, 267, 511, 516, 529
AlwNI CAGNNNCTG 1 cut(s) 719
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 4 cut(s) 11, 34, 542, 736
ApoI RAATTY 2 cut(s) 333, 407
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
Asp718I GGTACC 2 cut(s) 89, 567
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 3 cut(s) 578, 716, 762
AvaII GGWCC 3 cut(s) 578, 716, 762
BaeI ACNNNNGTAYC 4 cut(s) 551, 559, 584, 592
BamHI GGATCC 2 cut(s) 259, 521
BanI GGYRCC 2 cut(s) 89, 567
BanII GRGCYC 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 351, 383
BauI CACGAG 1 cut(s) 626
BbvI GCAGC 4 cut(s) 23, 46, 529, 723
BccI CCATC 4 cut(s) 46, 203, 451, 512
BceAI ACGGC 1 cut(s) 674
BciT130I CCWGG 5 cut(s) 120, 183, 501, 564, 573
BclI TGATCA 1 cut(s) 435
BfaI CTAG 2 cut(s) 129, 779
BfuAI ACCTGC 1 cut(s) 386
BisI GCNGC 4 cut(s) 12, 35, 543, 737
BlsI GCNGC 4 cut(s) 13, 36, 544, 738
Bme1390I CCNGG 5 cut(s) 120, 183, 501, 564, 573
Bme18I GGWCC 3 cut(s) 578, 716, 762
BmgT120I GGNCC 3 cut(s) 578, 716, 762
BmiI GGNNCC 4 cut(s) 91, 261, 523, 569
BmrFI CCNGG 5 cut(s) 120, 183, 501, 564, 573
BmsI GCATC 2 cut(s) 115, 153
BpuEI CTTGAG 1 cut(s) 292
BsaJI CCNNGG 4 cut(s) 563, 571, 666, 752
Bsc4I CCNNNNNNNGG 2 cut(s) 457, 753
Bse1I ACTGG 2 cut(s) 380, 540
Bse3DI GCAATG 2 cut(s) 321, 581
BseBI CCWGG 5 cut(s) 120, 183, 501, 564, 573
BseDI CCNNGG 4 cut(s) 563, 571, 666, 752
BseGI GGATG 2 cut(s) 101, 214
BseLI CCNNNNNNNGG 2 cut(s) 457, 753
BseMI GCAATG 2 cut(s) 321, 581
BseMII CTCAG 2 cut(s) 385, 521
BseNI ACTGG 2 cut(s) 380, 540
BseXI GCAGC 4 cut(s) 23, 46, 529, 723
BseYI CCCAGC 2 cut(s) 196, 221
BsgI GTGCAG 5 cut(s) 53, 305, 420, 464, 722
BshFI GGCC 1 cut(s) 186
BshNI GGYRCC 2 cut(s) 89, 567
BslI CCNNNNNNNGG 2 cut(s) 457, 753
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 4 cut(s) 259, 435, 503, 521
Bsp19I CCATGG 2 cut(s) 666, 752
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 384, 520
BspLI GGNNCC 4 cut(s) 91, 261, 523, 569
BspMI ACCTGC 1 cut(s) 386
BspPI GGATC 5 cut(s) 254, 267, 511, 516, 529
BspT107I GGYRCC 2 cut(s) 89, 567
BsrDI GCAATG 2 cut(s) 321, 581
BsrI ACTGG 2 cut(s) 380, 540
BssECI CCNNGG 4 cut(s) 563, 571, 666, 752
BssMI GATC 4 cut(s) 259, 435, 503, 521
BssNAI GTATAC 1 cut(s) 377
BssSI CACGAG 1 cut(s) 626
BssT1I CCWWGG 2 cut(s) 666, 752
Bst1107I GTATAC 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 626
Bst2UI CCWGG 5 cut(s) 120, 183, 501, 564, 573
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 288, 663, 696
BstDEI CTNAG 3 cut(s) 371, 507, 556
BstDSI CCRYGG 2 cut(s) 666, 752
BstF5I GGATG 2 cut(s) 101, 214
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 4 cut(s) 262, 438, 506, 524
BstMBI GATC 4 cut(s) 259, 435, 503, 521
BstMWI GCNNNNNNNGC 3 cut(s) 11, 292, 671
BstNI CCWGG 5 cut(s) 120, 183, 501, 564, 573
BstNSI RCATGY 1 cut(s) 688
BstSCI CCNGG 5 cut(s) 118, 181, 499, 562, 571
BstV1I GCAGC 4 cut(s) 23, 46, 529, 723
BstX2I RGATCY 3 cut(s) 259, 503, 521
BstYI RGATCY 3 cut(s) 259, 503, 521
BstZ17I GTATAC 1 cut(s) 377
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 2 cut(s) 666, 752
BtsCI GGATG 2 cut(s) 101, 214
BtsIMutI CAGTG 1 cut(s) 301
BveI ACCTGC 1 cut(s) 386
Cac8I GCNNGC 3 cut(s) 288, 663, 696
CaiI CAGNNNCTG 1 cut(s) 719
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 3 cut(s) 578, 716, 762
Csp6I GTAC 3 cut(s) 90, 388, 568
CviAII CATG 8 cut(s) 148, 174, 484, 667, 676, 685, 710, 753
CviQI GTAC 3 cut(s) 90, 388, 568
DdeI CTNAG 3 cut(s) 371, 507, 556
DpnI GATC 4 cut(s) 261, 437, 505, 523
DpnII GATC 4 cut(s) 259, 435, 503, 521
Eco130I CCWWGG 2 cut(s) 666, 752
Eco24I GRGCYC 1 cut(s) 160
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 3 cut(s) 578, 716, 762
Eco57I CTGAAG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 5 cut(s) 118, 181, 499, 562, 571
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 666, 752
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 2 cut(s) 666, 752
FaeI CATG 8 cut(s) 151, 177, 487, 670, 679, 688, 713, 756
FatI CATG 8 cut(s) 147, 173, 483, 666, 675, 684, 709, 752
FbaI TGATCA 1 cut(s) 435
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 4 cut(s) 12, 35, 543, 737
FokI GGATG 2 cut(s) 88, 221
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 4 cut(s) 12, 35, 543, 737
FspBI CTAG 2 cut(s) 129, 779
GlaI GCGC 1 cut(s) 167
GluI GCNGC 4 cut(s) 12, 35, 543, 737
GsaI CCCAGC 2 cut(s) 200, 225
HaeIII GGCC 1 cut(s) 186
HhaI GCGC 1 cut(s) 168
Hin1II CATG 8 cut(s) 151, 177, 487, 670, 679, 688, 713, 756
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HindIII AAGCTT 4 cut(s) 214, 268, 635, 696
HinfI GANTC 1 cut(s) 496
Hpy166II GTNNAC 2 cut(s) 301, 377
Hpy188I TCNGA 3 cut(s) 533, 748, 774
Hpy188III TCNNGA 5 cut(s) 206, 263, 493, 616, 626
Hpy8I GTNNAC 2 cut(s) 301, 377
HpyAV CCTTC 3 cut(s) 12, 535, 545
HpyCH4III ACNGT 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 292, 671
HpyF3I CTNAG 3 cut(s) 371, 507, 556
Hsp92II CATG 8 cut(s) 151, 177, 487, 670, 679, 688, 713, 756
HspAI GCGC 1 cut(s) 166
KpnI GGTACC 2 cut(s) 93, 571
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 4 cut(s) 259, 435, 503, 521
Lsp1109I GCAGC 4 cut(s) 23, 46, 529, 723
LweI GCATC 2 cut(s) 115, 153
MaeI CTAG 2 cut(s) 129, 779
MaeIII GTNAC 2 cut(s) 358, 703
MalI GATC 4 cut(s) 261, 437, 505, 523
MboI GATC 4 cut(s) 259, 435, 503, 521
MboII GAAGA 3 cut(s) 33, 520, 722
MflI RGATCY 3 cut(s) 259, 503, 521
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 3 cut(s) 67, 333, 407
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 6 cut(s) 125, 197, 250, 267, 603, 752
MseI TTAA 5 cut(s) 114, 405, 639, 648, 796
MslI CAYNNNNRTG 1 cut(s) 689
MspR9I CCNGG 5 cut(s) 120, 183, 501, 564, 573
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 5 cut(s) 120, 183, 501, 564, 573
MwoI GCNNNNNNNGC 3 cut(s) 11, 292, 671
NcoI CCATGG 2 cut(s) 666, 752
NdeII GATC 4 cut(s) 259, 435, 503, 521
NlaIII CATG 8 cut(s) 151, 177, 487, 670, 679, 688, 713, 756
NlaIV GGNNCC 4 cut(s) 91, 261, 523, 569
NmeAIII GCCGAG 1 cut(s) 660
NspI RCATGY 1 cut(s) 688
PaqCI CACCTGC 1 cut(s) 386
PctI GAATGC 1 cut(s) 625
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 4 cut(s) 13, 36, 544, 738
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
PpuMI RGGWCCY 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 716
Psp6I CCWGG 5 cut(s) 118, 181, 499, 562, 571
PspFI CCCAGC 2 cut(s) 196, 221
PspGI CCWGG 5 cut(s) 118, 181, 499, 562, 571
PspN4I GGNNCC 4 cut(s) 91, 261, 523, 569
PspPI GGNCC 3 cut(s) 578, 716, 762
PspPPI RGGWCCY 1 cut(s) 716
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 3 cut(s) 259, 503, 521
RsaI GTAC 3 cut(s) 91, 389, 569
RsaNI GTAC 3 cut(s) 90, 388, 568
RseI CAYNNNNRTG 1 cut(s) 689
SaqAI TTAA 5 cut(s) 114, 405, 639, 648, 796
SatI GCNGC 4 cut(s) 12, 35, 543, 737
Sau3AI GATC 4 cut(s) 259, 435, 503, 521
Sau96I GGNCC 3 cut(s) 578, 716, 762
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 5 cut(s) 120, 183, 501, 564, 573
SduI GDGCHC 1 cut(s) 160
SfaNI GCATC 2 cut(s) 115, 153
SinI GGWCC 3 cut(s) 578, 716, 762
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 3 cut(s) 67, 333, 407
SspMI CTAG 2 cut(s) 129, 779
StyD4I CCNGG 5 cut(s) 118, 181, 499, 562, 571
StyI CCWWGG 2 cut(s) 666, 752
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 3 cut(s) 154, 189, 723
TasI AATT 3 cut(s) 67, 333, 407
Tru1I TTAA 5 cut(s) 114, 405, 639, 648, 796
Tru9I TTAA 5 cut(s) 114, 405, 639, 648, 796
TscAI CASTG 1 cut(s) 308
TseI GCWGC 4 cut(s) 11, 34, 542, 736
TspRI CASTG 1 cut(s) 308
VpaK11BI GGWCC 3 cut(s) 578, 716, 762
XapI RAATTY 2 cut(s) 333, 407
XceI RCATGY 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 376
XspI CTAG 2 cut(s) 129, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.