MD15G1083400.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013461
Physical Location & Seq
Forward (+)
5705169 .. 5707176
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1083400.v1.1.491

Sequence Viewer

Length: 783 bp
ATGGCTGCTGCAGTGGGGAGAGGTTTCCTTGTGCAGCCATGTCCTTTATCCTTTGTTTCTAATAAGAACACATCAAGGCCCTCAGTTGCTATCGGGCATGGCAAACCAGCAAAGGGTCGAGGTTTTGCCCGCCATGTGACTCAAGCCCAAGTGCGCCCTACATGGCTCCCAGGGCTTGACCCACCAGCCTACCTCGACGGAAGCTTGGCTGGGGATTTTGGGTTTGACCCGCTTGGACTCGGGGAGGACCCGGAAAACTTGAGGTGGTATGTGCAGGCAGAGCTGGTTCATGCTCGCTTTGCAATGCTTGGAGTTGCAGGAATTCTACTTACAGATTTACTGAGGGTAACAGGGCTTCTTAGTGTACCAGTTTGGTACAATGCAGGTGCAGTAAAATTTGGCTTTGCTAATACAGAAACTCTGCTCATTGTCCAATTTATCTTGATGGGATTCGTTGAAACTAAAAGATACATGGATTTCAAAACTCCTGGATCTCAAGCCAAAGATGGGTCATTCTTTGGATTGGAATCTGCACTTGAAGGTTTAGAACCTGGATATCCCGGAGGTCCGTTGCTGAATCCTCTAGGTCTGGCAAAAGATATCAAGAATGCTCATGAGTGGAAGCTTAAAGAGATTAAGAACGGACGGCTTGCAATGGTGGCGATGCTGGGCTTCTTTGTGCAGGCATCTGTGACTCATGTGGGACCCATCGATAATCTTCTGGAGCACCTCTCCAACCCATGGCACAGAACCATAGTTCAGACCCTTGCAAACTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 map00196
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

261

Amino Acids

28.12

Weight (kDa)

8.65

Isoelectric Point (pI)

24.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 61 - 229 8.8e-50 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45474 AT1G45474
fragaria_vesca FvH4_2g34471 FvH4_2g34471 FvH4_2g34471
malus_domestica MD15G1083400.v1.1
prunus_persica Prupe.1G435900_v2.0.a1
pyrus_communis pycom15g07790
rosa_chinensis RchiOBHm_Chr6g0307891
rosa_laevigata RLG00000010689
rosa_multiflora Rmu_sc0003252.1_g000017
rosa_roxburghii Rroxscaffold_7G00160780
rosa_rugosa Rorug06G0361500
rosa_samantha Rh6AG470500 Rh6BG481500 Rh6CG486900 Rh6DG473000
rosa_wichuraiana Rw6G041080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 741
AciI CCGC 2 cut(s) 130, 230
AclWI GGATC 1 cut(s) 499
AcsI RAATTY 2 cut(s) 321, 395
AfaI GTAC 2 cut(s) 366, 377
AfiI CCNNNNNNNGG 3 cut(s) 113, 507, 741
AgsI TTSAA 3 cut(s) 458, 481, 539
AjnI CCWGG 3 cut(s) 169, 487, 550
AluBI AGCT 3 cut(s) 204, 283, 625
AluI AGCT 3 cut(s) 204, 283, 625
Alw21I GWGCWC 1 cut(s) 729
AlwI GGATC 1 cut(s) 499
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 5, 8, 34
ApoI RAATTY 2 cut(s) 321, 395
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 4 cut(s) 78, 247, 566, 704
AsuC2I CCSGG 2 cut(s) 251, 561
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 3 cut(s) 247, 566, 704
BarI GAAGNNNNNNTAC 2 cut(s) 339, 371
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 1 cut(s) 46
BccI CCATC 3 cut(s) 439, 500, 716
BceAI ACGGC 1 cut(s) 662
BciT130I CCWGG 3 cut(s) 171, 489, 552
BcnI CCSGG 2 cut(s) 251, 561
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 374
BisI GCNGC 3 cut(s) 6, 9, 35
BlsI GCNGC 3 cut(s) 7, 10, 36
Bme1390I CCNGG 5 cut(s) 171, 251, 489, 552, 561
Bme18I GGWCC 3 cut(s) 247, 566, 704
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 4 cut(s) 78, 247, 566, 704
BmiI GGNNCC 4 cut(s) 167, 249, 705, 706
BmrFI CCNGG 5 cut(s) 171, 251, 489, 552, 561
BmsI GCATC 2 cut(s) 654, 695
BplI GAGNNNNNCTC 2 cut(s) 716, 748
BpmI CTGGAG 1 cut(s) 743
BpuEI CTTGAG 3 cut(s) 126, 280, 480
BpuMI CCSGG 2 cut(s) 251, 561
Bsa29I ATCGAT 1 cut(s) 711
BsaBI GATNNNNATC 1 cut(s) 526
BsaJI CCNNGG 3 cut(s) 169, 170, 740
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 507, 741
Bse1I ACTGG 1 cut(s) 368
Bse3DI GCAATG 2 cut(s) 309, 660
Bse8I GATNNNNATC 1 cut(s) 526
BseBI CCWGG 3 cut(s) 171, 489, 552
BseCI ATCGAT 1 cut(s) 711
BseDI CCNNGG 3 cut(s) 169, 170, 740
BseJI GATNNNNATC 1 cut(s) 526
BseLI CCNNNNNNNGG 3 cut(s) 113, 507, 741
BseMI GCAATG 2 cut(s) 309, 660
BseMII CTCAG 2 cut(s) 96, 332
BseNI ACTGG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 46
BseYI CCCAGC 2 cut(s) 209, 667
BsgI GTGCAG 5 cut(s) 53, 293, 408, 516, 701
BshFI GGCC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 711
BsiHKAI GWGCWC 1 cut(s) 729
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 2 cut(s) 251, 561
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 3 cut(s) 113, 507, 741
BsmFI GGGAC 1 cut(s) 717
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 729
Bsp143I GATC 1 cut(s) 491
Bsp19I CCATGG 1 cut(s) 740
BspACI CCGC 2 cut(s) 130, 230
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 2 cut(s) 95, 333
BspDI ATCGAT 1 cut(s) 711
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 4 cut(s) 167, 249, 705, 706
BspMAI CTGCAG 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 374
BspPI GGATC 1 cut(s) 499
BsrDI GCAATG 2 cut(s) 309, 660
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 3 cut(s) 169, 170, 740
BssMI GATC 1 cut(s) 491
BssT1I CCWWGG 1 cut(s) 740
Bst2UI CCWGG 3 cut(s) 171, 489, 552
BstC8I GCNNGC 5 cut(s) 130, 276, 295, 651, 684
BstDEI CTNAG 3 cut(s) 82, 341, 359
BstDSI CCRYGG 1 cut(s) 740
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 1 cut(s) 494
BstMBI GATC 1 cut(s) 491
BstMWI GCNNNNNNNGC 4 cut(s) 172, 280, 299, 659
BstNI CCWGG 3 cut(s) 171, 489, 552
BstSCI CCNGG 5 cut(s) 169, 249, 487, 550, 559
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
Bsu15I ATCGAT 1 cut(s) 711
BsuRI GGCC 1 cut(s) 79
BsuTUI ATCGAT 1 cut(s) 711
BtgI CCRYGG 1 cut(s) 740
BtgZI GCGATG 1 cut(s) 677
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 374
Cac8I GCNNGC 5 cut(s) 130, 276, 295, 651, 684
CciI TCATGA 1 cut(s) 613
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 4 cut(s) 78, 247, 566, 704
ClaI ATCGAT 1 cut(s) 711
Csp6I GTAC 2 cut(s) 365, 376
CviAII CATG 9 cut(s) 39, 98, 134, 162, 290, 472, 614, 698, 741
CviQI GTAC 2 cut(s) 365, 376
DdeI CTNAG 3 cut(s) 82, 341, 359
DpnI GATC 1 cut(s) 493
DpnII GATC 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 740
Eco32I GATATC 2 cut(s) 557, 601
Eco47I GGWCC 3 cut(s) 247, 566, 704
Eco88I CYCGRG 1 cut(s) 239
EcoO109I RGGNCCY 3 cut(s) 78, 247, 704
EcoRI GAATTC 1 cut(s) 321
EcoRII CCWGG 3 cut(s) 169, 487, 550
EcoRV GATATC 2 cut(s) 557, 601
EcoT14I CCWWGG 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 740
FaeI CATG 9 cut(s) 42, 101, 137, 165, 293, 475, 617, 701, 744
FaqI GGGAC 1 cut(s) 717
FatI CATG 9 cut(s) 38, 97, 133, 161, 289, 471, 613, 697, 740
FauI CCCGC 2 cut(s) 137, 237
Fnu4HI GCNGC 3 cut(s) 6, 9, 35
Fsp4HI GCNGC 3 cut(s) 6, 9, 35
FspBI CTAG 1 cut(s) 584
GlaI GCGC 1 cut(s) 155
GluI GCNGC 3 cut(s) 6, 9, 35
GsaI CCCAGC 2 cut(s) 213, 671
GsuI CTGGAG 1 cut(s) 743
HaeIII GGCC 1 cut(s) 79
HapII CCGG 2 cut(s) 251, 561
HhaI GCGC 1 cut(s) 156
Hin1II CATG 9 cut(s) 42, 101, 137, 165, 293, 475, 617, 701, 744
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 2 cut(s) 202, 623
HinfI GANTC 6 cut(s) 139, 237, 450, 527, 577, 694
HpaII CCGG 2 cut(s) 251, 561
Hpy166II GTNNAC 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 762
Hpy188III TCNNGA 4 cut(s) 442, 604, 614, 722
Hpy8I GTNNAC 1 cut(s) 365
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 280, 299, 659
HpyF3I CTNAG 3 cut(s) 82, 341, 359
Hsp92II CATG 9 cut(s) 42, 101, 137, 165, 293, 475, 617, 701, 744
HspAI GCGC 1 cut(s) 154
KflI GGGWCCC 1 cut(s) 704
Kzo9I GATC 1 cut(s) 491
LmnI GCTCC 2 cut(s) 171, 724
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 2 cut(s) 654, 695
MaeI CTAG 1 cut(s) 584
MaeIII GTNAC 3 cut(s) 136, 346, 691
MalI GATC 1 cut(s) 493
MboI GATC 1 cut(s) 491
MboII GAAGA 2 cut(s) 710, 768
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 1 cut(s) 729
MluCI AATT 3 cut(s) 321, 395, 434
MlyI GAGTC 3 cut(s) 133, 231, 688
MmeI TCCRAC 1 cut(s) 759
MseI TTAA 3 cut(s) 627, 636, 781
MspI CCGG 2 cut(s) 251, 561
MspR9I CCNGG 5 cut(s) 171, 251, 489, 552, 561
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 3 cut(s) 171, 489, 552
MwoI GCNNNNNNNGC 4 cut(s) 172, 280, 299, 659
NciI CCSGG 2 cut(s) 251, 561
NcoI CCATGG 1 cut(s) 740
NdeII GATC 1 cut(s) 491
NlaIII CATG 9 cut(s) 42, 101, 137, 165, 293, 475, 617, 701, 744
NlaIV GGNNCC 4 cut(s) 167, 249, 705, 706
NmuCI GTSAC 2 cut(s) 136, 691
PagI TCATGA 1 cut(s) 613
PaqCI CACCTGC 1 cut(s) 374
PasI CCCWGGG 1 cut(s) 170
PctI GAATGC 1 cut(s) 613
PfeI GAWTC 3 cut(s) 450, 527, 577
PflMI CCANNNNNTGG 1 cut(s) 741
PfoI TCCNGGA 2 cut(s) 487, 559
PkrI GCNGC 3 cut(s) 7, 10, 36
PleI GAGTC 3 cut(s) 133, 231, 688
PpsI GAGTC 3 cut(s) 133, 231, 688
PpuMI RGGWCCY 2 cut(s) 247, 704
Psp5II RGGWCCY 2 cut(s) 247, 704
Psp6I CCWGG 3 cut(s) 169, 487, 550
PspFI CCCAGC 2 cut(s) 209, 667
PspGI CCWGG 3 cut(s) 169, 487, 550
PspN4I GGNNCC 4 cut(s) 167, 249, 705, 706
PspPI GGNCC 4 cut(s) 78, 247, 566, 704
PspPPI RGGWCCY 2 cut(s) 247, 704
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 491
RsaI GTAC 2 cut(s) 366, 377
RsaNI GTAC 2 cut(s) 365, 376
SaqAI TTAA 3 cut(s) 627, 636, 781
SatI GCNGC 3 cut(s) 6, 9, 35
Sau3AI GATC 1 cut(s) 491
Sau96I GGNCC 4 cut(s) 78, 247, 566, 704
SchI GAGTC 3 cut(s) 133, 231, 688
ScrFI CCNGG 5 cut(s) 171, 251, 489, 552, 561
SduI GDGCHC 1 cut(s) 729
SfaNI GCATC 2 cut(s) 654, 695
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 3 cut(s) 247, 566, 704
SmlI CTYRAG 3 cut(s) 141, 259, 495
SmoI CTYRAG 3 cut(s) 141, 259, 495
Sse9I AATT 3 cut(s) 321, 395, 434
SsiI CCGC 2 cut(s) 130, 230
SspMI CTAG 1 cut(s) 584
StyD4I CCNGG 5 cut(s) 169, 249, 487, 550, 559
StyI CCWWGG 1 cut(s) 740
TaqI TCGA 3 cut(s) 118, 195, 711
TasI AATT 3 cut(s) 321, 395, 434
TfiI GAWTC 3 cut(s) 450, 527, 577
Tru1I TTAA 3 cut(s) 627, 636, 781
Tru9I TTAA 3 cut(s) 627, 636, 781
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 136, 691
TseI GCWGC 3 cut(s) 5, 8, 34
Tsp45I GTSAC 2 cut(s) 136, 691
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 3 cut(s) 213, 558, 657
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 741
VpaK11BI GGWCC 3 cut(s) 247, 566, 704
XapI RAATTY 2 cut(s) 321, 395
XspI CTAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.