AT1G48270

Slime mold cyclic AMP receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012013
Physical Location & Seq
Reverse (-)
17827953 .. 17830420
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48270.2

Sequence Viewer

Length: 981 bp
ATGTCGGCGGTTCTCACAGCCGGCGGAGGCTTAACTGCCGGGGATCGCAGCATTATTACGGCGATTAACACCGGCGCTTCGAGTCTCTCATTCGTCGGCTCAGCCTTCATCGTTCTCTGCTACTGCCTCTTCAAAGAACTTCGAAAATTCTCTTTCAAGCTCGTCTTCTACCTTGCTCTCTCTGATATGCTTTGCAGTTTCTTCCTAATCGTTGGGGATCCTTCAAAGGGGTTCATTTGTTACGCACAAGGCTACACTACTCATTTCTTCTGCGTTGCTTCGTTCTTGTGGACAACTACAATTGCTTTCACTCTTCATCGTACTGTTGTCAAGCATAAAACTGATGTGGAGGATTTGGAAGCAATGTTTCATTTGTATGTATGGGGGACTTCCTTGGTTGTGACTGTCATACGTTCTTTTGGTAACAACCACTCACATTTGGGGCCATGGTGCTGGACGCAAACTGGTCTTAAGGGAAAGGCTGTTCATTTTTTAACTTTCTACGCTCCTCTTTGGGGAGCCATTCTTTACAATGGGTTTACTTACTTCCAAGTGATACGGATGCTAAGAAATGCTAGACGTATGGCAGTTGGAATGTCAGACCGAGTCGATCAATTTGATAATAGAGCAGAGTTAAAGGTGTTGAACAGATGGGGATACTATCCACTCATTCTAATAGGATCATGGGCATTCGGCACTATTAACCGTATCCATGATTTCATCGAGCCAGGGCATAAGATCTTCTGGCTCTCAGTTCTTGACGTTGGGACAGCTGCACTAATGGGCTTGTTCAATTCAATAGCCTATGGTTTCAACAGCTCAGTGCGTCGAGCAATCCATGAGAGACTGGAGCTATTCTTGCCAGAACGGCTATATCGATGGCTTCCAAGCAATTTCAGACCAAAAAACCATCTGATTCTACATCAGCAACAACAACAGCGAAGCGAAATGGTATCACTCAAGACCGAGGACCAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0001101 GO:0003006 GO:0003674 GO:0004888 GO:0004930 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006082 GO:0006109 GO:0006520 GO:0006558 GO:0006570 GO:0006571 GO:0006725 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007186 GO:0007202 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009645 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009741 GO:0009742 GO:0009755 GO:0009785 GO:0009787 GO:0009788 GO:0009791 GO:0009845 GO:0009889 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010231 GO:0010244 GO:0010431 GO:0010517 GO:0010518 GO:0010646 GO:0010647 GO:0010648 GO:0010675 GO:0010863 GO:0010919 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016053 GO:0017144 GO:0019220 GO:0019222 GO:0019438 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030522 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0032960 GO:0033993 GO:0038023 GO:0042221 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043401 GO:0043436 GO:0044093 GO:0044214 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046394 GO:0048316 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060089 GO:0060191 GO:0060193 GO:0061458 GO:0062012 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071695 GO:0071704 GO:0071944 GO:0080090 GO:0089717 GO:0090351 GO:0090567 GO:0097305 GO:0097306 GO:0097437 GO:0098588 GO:0098805 GO:0104004 GO:1900274 GO:1901360 GO:1901362 GO:1901419 GO:1901420 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700 GO:1901701 GO:1902221 GO:1902223 GO:1902930 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dicty_CAR

Protein Analysis

326

Amino Acids

37.25

Weight (kDa)

9.39

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
7tm_2 PF00002 21 - 193 5.8e-08 7 transmembrane receptor (Secretin family)
Dicty_CAR PF05462 26 - 274 5e-15 Slime mold cyclic AMP receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48270 AT1G48270
fragaria_vesca FvH4_2g30820
malus_domestica MD08G1073200.v1.1 MD15G1048100.v1.1
prunus_persica Prupe.1G402500_v2.0.a1 Prupe.1G402500_v2.0.a1
pyrus_communis pycom08g06060 pycom15g04710
rosa_chinensis RchiOBHm_Chr6g0312021
rosa_laevigata RLG00000010360
rosa_multiflora Rmu_sc0005381.1_g000008
rosa_roxburghii Rroxscaffold_7G00157120
rosa_rugosa Rorug06G0392300
rosa_samantha Rh6AG508700 Rh6BG520000 Rh6CG525900 Rh6DG511400
rosa_wichuraiana Rw6G044300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 24
AclWI GGATC 4 cut(s) 51, 212, 225, 688
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 227, 515
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 7 cut(s) 133, 157, 225, 646, 793, 798, 814
AjnI CCWGG 1 cut(s) 727
AloI GAACNNNNNNTCC 2 cut(s) 468, 500
AluBI AGCT 4 cut(s) 160, 773, 819, 853
AluI AGCT 4 cut(s) 160, 773, 819, 853
Alw26I GTCTC 2 cut(s) 89, 838
AlwI GGATC 4 cut(s) 51, 212, 225, 688
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 2 cut(s) 48, 773
ApoI RAATTY 1 cut(s) 146
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 443, 970
AsuC2I CCSGG 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 970
BamHI GGATCC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 60, 760
BccI CCATC 3 cut(s) 645, 873, 918
BceAI ACGGC 2 cut(s) 75, 884
BciT130I CCWGG 1 cut(s) 729
BciVI GTATCC 2 cut(s) 650, 719
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 89, 838
BfaI CTAG 1 cut(s) 576
BfoI RGCGCY 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 470
BfuI GTATCC 2 cut(s) 650, 719
BglI GCCNNNNNGGC 1 cut(s) 868
BglII AGATCT 1 cut(s) 738
BisI GCNGC 2 cut(s) 49, 774
BlpI GCTNAGC 1 cut(s) 100
BlsI GCNGC 2 cut(s) 50, 775
Bme1390I CCNGG 2 cut(s) 40, 729
Bme18I GGWCC 1 cut(s) 970
BmgT120I GGNCC 2 cut(s) 443, 970
BmiI GGNNCC 3 cut(s) 219, 444, 520
BmrFI CCNGG 2 cut(s) 40, 729
BmsI GCATC 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 157
BpmI CTGGAG 1 cut(s) 869
Bpu1102I GCTNAGC 1 cut(s) 100
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 944
BpuMI CCSGG 1 cut(s) 40
Bsa29I ATCGAT 1 cut(s) 877
BsaJI CCNNGG 5 cut(s) 39, 393, 446, 728, 966
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 515
Bse118I RCCGGY 2 cut(s) 20, 71
Bse1I ACTGG 2 cut(s) 469, 852
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 729
BseCI ATCGAT 1 cut(s) 877
BseDI CCNNGG 5 cut(s) 39, 393, 446, 728, 966
BseGI GGATG 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 227, 515
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 3 cut(s) 114, 765, 834
BseNI ACTGG 2 cut(s) 469, 852
BseRI GAGGAG 1 cut(s) 498
BseXI GCAGC 2 cut(s) 60, 760
BsgI GTGCAG 1 cut(s) 759
BshFI GGCC 1 cut(s) 445
BshVI ATCGAT 1 cut(s) 877
BsiSI CCGG 3 cut(s) 21, 39, 72
BslFI GGGAC 2 cut(s) 400, 781
BslI CCNNNNNNNGG 2 cut(s) 227, 515
BsmAI GTCTC 2 cut(s) 89, 838
BsmFI GGGAC 2 cut(s) 400, 781
BsmI GAATGC 1 cut(s) 689
BsnI GGCC 1 cut(s) 445
Bsp119I TTCGAA 1 cut(s) 142
Bsp143I GATC 5 cut(s) 43, 217, 610, 680, 738
Bsp1720I GCTNAGC 1 cut(s) 100
Bsp19I CCATGG 1 cut(s) 446
BspACI CCGC 2 cut(s) 8, 24
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 3 cut(s) 113, 764, 833
BspDI ATCGAT 1 cut(s) 877
BspLI GGNNCC 3 cut(s) 219, 444, 520
BspPI GGATC 4 cut(s) 51, 212, 225, 688
BspT104I TTCGAA 1 cut(s) 142
BspTI CTTAAG 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 2 cut(s) 20, 71
BsrI ACTGG 2 cut(s) 469, 852
BssAI RCCGGY 2 cut(s) 20, 71
BssECI CCNNGG 5 cut(s) 39, 393, 446, 728, 966
BssMI GATC 5 cut(s) 43, 217, 610, 680, 738
BssT1I CCWWGG 2 cut(s) 393, 446
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 3 cut(s) 325, 406, 707
Bst6I CTCTTC 2 cut(s) 134, 318
BstAFI CTTAAG 1 cut(s) 470
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 4 cut(s) 100, 566, 751, 820
BstDSI CCRYGG 1 cut(s) 446
BstF5I GGATG 1 cut(s) 567
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 5 cut(s) 46, 220, 613, 683, 741
BstMAI GTCTC 2 cut(s) 89, 838
BstMBI GATC 5 cut(s) 43, 217, 610, 680, 738
BstMWI GCNNNNNNNGC 2 cut(s) 859, 868
BstNI CCWGG 1 cut(s) 729
BstSCI CCNGG 2 cut(s) 38, 727
BstV1I GCAGC 2 cut(s) 60, 760
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 2 cut(s) 217, 738
BstXI CCANNNNNNTGG 1 cut(s) 453
BstYI RGATCY 2 cut(s) 217, 738
Bsu15I ATCGAT 1 cut(s) 877
BsuI GTATCC 2 cut(s) 650, 719
BsuRI GGCC 1 cut(s) 445
BsuTUI ATCGAT 1 cut(s) 877
BtgI CCRYGG 1 cut(s) 446
BtsCI GGATG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 828
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 2 cut(s) 20, 71
Cfr13I GGNCC 2 cut(s) 443, 970
ClaI ATCGAT 1 cut(s) 877
CseI GACGC 2 cut(s) 466, 815
Csp6I GTAC 1 cut(s) 321
CviAII CATG 4 cut(s) 447, 684, 713, 839
CviQI GTAC 1 cut(s) 321
DdeI CTNAG 4 cut(s) 100, 566, 751, 820
DpnI GATC 5 cut(s) 45, 219, 612, 682, 740
DpnII GATC 5 cut(s) 43, 217, 610, 680, 738
Eam1104I CTCTTC 2 cut(s) 134, 318
EarI CTCTTC 2 cut(s) 134, 318
EciI GGCGGA 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 393, 446
Eco47I GGWCC 1 cut(s) 970
EcoRII CCWGG 1 cut(s) 727
EcoT14I CCWWGG 2 cut(s) 393, 446
ErhI CCWWGG 2 cut(s) 393, 446
FaeI CATG 4 cut(s) 450, 687, 716, 842
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 2 cut(s) 400, 781
FatI CATG 4 cut(s) 446, 683, 712, 838
Fnu4HI GCNGC 2 cut(s) 49, 774
FokI GGATG 1 cut(s) 574
Fsp4HI GCNGC 2 cut(s) 49, 774
FspBI CTAG 1 cut(s) 576
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 49, 774
GsuI CTGGAG 1 cut(s) 869
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 445
HapII CCGG 3 cut(s) 21, 39, 72
HgaI GACGC 2 cut(s) 466, 815
HhaI GCGC 1 cut(s) 77
Hin1II CATG 4 cut(s) 450, 687, 716, 842
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 3 cut(s) 82, 606, 916
HpaII CCGG 3 cut(s) 21, 39, 72
Hpy166II GTNNAC 2 cut(s) 291, 540
Hpy188I TCNGA 4 cut(s) 184, 601, 899, 915
Hpy188III TCNNGA 2 cut(s) 758, 961
Hpy8I GTNNAC 2 cut(s) 291, 540
Hpy99I CGWCG 2 cut(s) 98, 831
HpyAV CCTTC 2 cut(s) 115, 231
HpyCH4III ACNGT 3 cut(s) 325, 406, 707
HpyCH4IV ACGT 3 cut(s) 412, 580, 762
HpyCH4V TGCA 2 cut(s) 195, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 859, 868
HpyF3I CTNAG 4 cut(s) 100, 566, 751, 820
HpySE526I ACGT 3 cut(s) 412, 580, 762
Hsp92II CATG 4 cut(s) 450, 687, 716, 842
HspAI GCGC 1 cut(s) 75
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 5 cut(s) 43, 217, 610, 680, 738
LmnI GCTCC 3 cut(s) 511, 518, 850
Lsp1109I GCAGC 2 cut(s) 60, 760
LweI GCATC 1 cut(s) 552
MaeI CTAG 1 cut(s) 576
MaeII ACGT 3 cut(s) 412, 580, 762
MaeIII GTNAC 3 cut(s) 239, 400, 422
MalI GATC 5 cut(s) 45, 219, 612, 682, 740
MboI GATC 5 cut(s) 43, 217, 610, 680, 738
MboII GAAGA 6 cut(s) 121, 157, 193, 259, 305, 733
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 2 cut(s) 217, 738
MluCI AATT 5 cut(s) 146, 300, 614, 793, 892
MlyI GAGTC 2 cut(s) 91, 615
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 5 cut(s) 20, 137, 343, 519, 961
MroNI GCCGGC 1 cut(s) 20
MseI TTAA 6 cut(s) 32, 66, 471, 494, 635, 702
MslI CAYNNNNRTG 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 773
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 3 cut(s) 21, 39, 72
MspR9I CCNGG 2 cut(s) 40, 729
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 689
MvaI CCWGG 1 cut(s) 729
MwoI GCNNNNNNNGC 2 cut(s) 859, 868
NaeI GCCGGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 40
NcoI CCATGG 1 cut(s) 446
NdeII GATC 5 cut(s) 43, 217, 610, 680, 738
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 4 cut(s) 450, 687, 716, 842
NlaIV GGNNCC 3 cut(s) 219, 444, 520
NmuCI GTSAC 1 cut(s) 400
NspV TTCGAA 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 874
PctI GAATGC 1 cut(s) 689
PdiI GCCGGC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 916
PflFI GACNNNGTC 1 cut(s) 605
PkrI GCNGC 2 cut(s) 50, 775
PleI GAGTC 2 cut(s) 90, 614
PpsI GAGTC 2 cut(s) 90, 614
Psp6I CCWGG 1 cut(s) 727
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 3 cut(s) 219, 444, 520
PspPI GGNCC 2 cut(s) 443, 970
PsuI RGATCY 2 cut(s) 217, 738
PsyI GACNNNGTC 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 6 cut(s) 32, 66, 471, 494, 635, 702
SatI GCNGC 2 cut(s) 49, 774
Sau3AI GATC 5 cut(s) 43, 217, 610, 680, 738
Sau96I GGNCC 2 cut(s) 443, 970
SchI GAGTC 2 cut(s) 91, 615
ScrFI CCNGG 2 cut(s) 40, 729
SetI ASST 9 cut(s) 162, 174, 415, 583, 642, 765, 775, 821, 855
SfaNI GCATC 1 cut(s) 552
SfuI TTCGAA 1 cut(s) 142
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 1 cut(s) 970
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 2 cut(s) 470, 959
SmoI CTYRAG 2 cut(s) 470, 959
Sse9I AATT 5 cut(s) 146, 300, 614, 793, 892
SsiI CCGC 2 cut(s) 8, 24
SspMI CTAG 1 cut(s) 576
StyD4I CCNGG 2 cut(s) 38, 727
StyI CCWWGG 2 cut(s) 393, 446
TaaI ACNGT 3 cut(s) 325, 406, 707
TaiI ACGT 3 cut(s) 415, 583, 765
TaqI TCGA 6 cut(s) 80, 142, 609, 723, 829, 877
TaqII GACCGA 2 cut(s) 618, 980
TasI AATT 5 cut(s) 146, 300, 614, 793, 892
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 6 cut(s) 32, 66, 471, 494, 635, 702
Tru9I TTAA 6 cut(s) 32, 66, 471, 494, 635, 702
TscAI CASTG 1 cut(s) 828
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 2 cut(s) 48, 773
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 6 cut(s) 97, 223, 305, 359, 476, 709
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 1 cut(s) 828
Tth111I GACNNNGTC 1 cut(s) 605
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 970
XapI RAATTY 1 cut(s) 146
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.