RLG00000010360

G-protein coupled receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012013
Physical Location & Seq
Reverse (-)
975348 .. 978206
2859 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010360

Sequence Viewer

Length: 960 bp
ATGGCGGCGACGGGGCAAGTCGCCGGAGGCCTGACGTCGTACGATCGCCAAGTTTTGACTGCGGTCAATGCCGGAGCGGCCAGCCTCTCCTTCGTCGGCTCCGGCTTCATCGTCCTCTGCTACGTCCTCTTCAAAGAGCTCCGCAAGTTCTCCTTCAAGCTCGTCTTCTACCTCGCTCTCTCCGACATGCTTTGTAGCTTCTTCAGCATGGTTGGGGATCCATCCAGAGGATTTTTCTGTTACTCGCATGGCTACAGCACTCATTTCTTCTGTGTTGCGTCGTTCCTGTGGACTACGACGATTGCTTTTACTCTTCACCGTACTGTTGTTAAACACAAAACTGATGTGGAAGATTTGGAGGCAATGTTTCATTTGTATGTTTGGGGGACTTCACTAGTTGTGACAGTTGTGCGATCTATTGGTAATAACCATAGTCACCTAGGTACATGGTGTTGGTCGCAGACTGGGCGTACAGGAAAGGCACTTCACTTTATAACCTTTTATATGCCACTCTGGGGTGCAATTCTTTACAATGGTTTTACTTACTTTCAAGTCATACGCATGCTGAACAATGCAAGGCGTATGGCAGGTAGCATATCCGACCGCCCTTACCAATCAGATGCCAGAGCAGAAACAAAGGCTTTGAACAGGTGGGGGTACTACCCGCTCATCCTGATAGGATCATGGGCTTTTGGCACCATCAACCGCATTCATGACTTTATTGAACCAGATCATAAAATATTTTGGCTCTCAGTTCTTGACGTTGGGACAGCTGCACTTATGGGTCTGTTCAATTCAATAGCCTATGGCTTGAATTCCTCAGTTCGACGGGCAATACAAGAAAGATTGGATCTGTTCTGGCCAGACAGGCTTCGAAGATGGTTCCCCAACAGTTCAAGGCTTAGAAACCAACATGAAGAGAGTGAACTAGCATCACTAAAGATTCAAGATCAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0001101 GO:0003006 GO:0003674 GO:0004888 GO:0004930 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006082 GO:0006109 GO:0006520 GO:0006558 GO:0006570 GO:0006571 GO:0006725 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007186 GO:0007202 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009645 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009741 GO:0009742 GO:0009755 GO:0009785 GO:0009787 GO:0009788 GO:0009791 GO:0009845 GO:0009889 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010231 GO:0010244 GO:0010431 GO:0010517 GO:0010518 GO:0010646 GO:0010647 GO:0010648 GO:0010675 GO:0010863 GO:0010919 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016053 GO:0017144 GO:0019220 GO:0019222 GO:0019438 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030522 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0032960 GO:0033993 GO:0038023 GO:0042221 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043401 GO:0043436 GO:0044093 GO:0044214 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046394 GO:0048316 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060089 GO:0060191 GO:0060193 GO:0061458 GO:0062012 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071695 GO:0071704 GO:0071944 GO:0080090 GO:0089717 GO:0090351 GO:0090567 GO:0097305 GO:0097306 GO:0097437 GO:0098588 GO:0098805 GO:0104004 GO:1900274 GO:1901360 GO:1901362 GO:1901419 GO:1901420 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700 GO:1901701 GO:1902221 GO:1902223 GO:1902930 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dicty_CAR

Protein Analysis

320

Amino Acids

36.4

Weight (kDa)

9.3

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dicty_CAR PF05462 26 - 273 2.1e-13 Slime mold cyclic AMP receptor
7tm_2 PF00002 27 - 193 8.7e-08 7 transmembrane receptor (Secretin family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48270 AT1G48270
fragaria_vesca FvH4_2g30820
malus_domestica MD08G1073200.v1.1 MD15G1048100.v1.1
prunus_persica Prupe.1G402500_v2.0.a1 Prupe.1G402500_v2.0.a1
pyrus_communis pycom08g06060 pycom15g04710
rosa_chinensis RchiOBHm_Chr6g0312021
rosa_laevigata RLG00000010360
rosa_multiflora Rmu_sc0005381.1_g000008
rosa_roxburghii Rroxscaffold_7G00157120
rosa_rugosa Rorug06G0392300
rosa_samantha Rh6AG508700 Rh6BG520000 Rh6CG525900 Rh6DG511400
rosa_wichuraiana Rw6G044300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 494
AatII GACGTC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 695
AccBSI CCGCTC 2 cut(s) 77, 667
AciI CCGC 7 cut(s) 5, 62, 77, 142, 604, 665, 706
AclWI GGATC 4 cut(s) 212, 225, 688, 858
AcoI YGGCCR 2 cut(s) 78, 860
AcsI RAATTY 1 cut(s) 814
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 5 cut(s) 41, 322, 445, 472, 659
AfiI CCNNNNNNNGG 2 cut(s) 227, 515
AhlI ACTAGT 1 cut(s) 394
AluBI AGCT 4 cut(s) 139, 160, 198, 773
AluI AGCT 4 cut(s) 139, 160, 198, 773
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 4 cut(s) 212, 225, 688, 858
AoxI GGCC 3 cut(s) 28, 78, 860
ApeKI GCWGC 1 cut(s) 773
ApoI RAATTY 1 cut(s) 814
AspA2I CCTAGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 308, 428
AsuII TTCGAA 1 cut(s) 874
AvrII CCTAGG 1 cut(s) 439
BalI TGGCCA 1 cut(s) 862
BamHI GGATCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 695
BanII GRGCYC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 760
BccI CCATC 3 cut(s) 229, 707, 873
BcuI ACTAGT 1 cut(s) 394
BfaI CTAG 4 cut(s) 395, 440, 929, 958
BfmI CTRYAG 1 cut(s) 253
BfuAI ACCTGC 1 cut(s) 578
BglI GCCNNNNNGGC 2 cut(s) 77, 868
BisI GCNGC 3 cut(s) 6, 78, 774
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 3 cut(s) 7, 79, 775
BmiI GGNNCC 4 cut(s) 100, 219, 697, 884
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 2 cut(s) 610, 941
BmuI ACTGGG 1 cut(s) 474
BoxI GACNNNNGTC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 157
Bpu14I TTCGAA 1 cut(s) 874
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 439
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 515
Bse1I ACTGG 1 cut(s) 469
Bse3DI GCAATG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 2 cut(s) 221, 669
BseLI CCNNNNNNNGG 2 cut(s) 227, 515
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 765, 834
BseNI ACTGG 1 cut(s) 469
BseXI GCAGC 1 cut(s) 760
BsgI GTGCAG 1 cut(s) 759
Bsh1285I CGRYCG 2 cut(s) 46, 604
BshFI GGCC 3 cut(s) 30, 80, 862
BshNI GGYRCC 1 cut(s) 695
BsiEI CGRYCG 2 cut(s) 46, 604
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 3 cut(s) 24, 72, 102
BsiWI CGTACG 1 cut(s) 39
BslFI GGGAC 2 cut(s) 400, 781
BslI CCNNNNNNNGG 2 cut(s) 227, 515
BsmFI GGGAC 2 cut(s) 400, 781
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 3 cut(s) 30, 80, 862
Bsp119I TTCGAA 1 cut(s) 874
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 949
BspACI CCGC 7 cut(s) 5, 62, 77, 142, 604, 665, 706
BspANI GGCC 3 cut(s) 30, 80, 862
BspCNI CTCAG 2 cut(s) 764, 833
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 4 cut(s) 100, 219, 697, 884
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 4 cut(s) 212, 225, 688, 858
BspT104I TTCGAA 1 cut(s) 874
BspT107I GGYRCC 1 cut(s) 695
BsrBI CCGCTC 2 cut(s) 77, 667
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 949
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 439
Bst4CI ACNGT 4 cut(s) 320, 325, 406, 893
Bst6I CTCTTC 3 cut(s) 134, 318, 912
BstACI GRCGYC 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 874
BstC8I GCNNGC 2 cut(s) 82, 563
BstDEI CTNAG 3 cut(s) 751, 820, 902
BstF5I GGATG 2 cut(s) 221, 669
BstKTI GATC 7 cut(s) 46, 220, 416, 683, 733, 853, 952
BstMBI GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 949
BstMCI CGRYCG 2 cut(s) 46, 604
BstMWI GCNNNNNNNGC 5 cut(s) 68, 77, 204, 466, 868
BstNSI RCATGY 2 cut(s) 190, 565
BstPAI GACNNNNGTC 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 760
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 2 cut(s) 217, 850
BstYI RGATCY 2 cut(s) 217, 850
BsuRI GGCC 3 cut(s) 30, 80, 862
BtsCI GGATG 2 cut(s) 221, 669
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 2 cut(s) 82, 563
CciI TCATGA 1 cut(s) 712
CseI GACGC 1 cut(s) 267
Csp6I GTAC 5 cut(s) 40, 321, 444, 471, 658
CviAII CATG 8 cut(s) 187, 208, 248, 447, 562, 684, 713, 914
CviQI GTAC 5 cut(s) 40, 321, 444, 471, 658
DdeI CTNAG 3 cut(s) 751, 820, 902
DpnI GATC 7 cut(s) 45, 219, 415, 682, 732, 852, 951
DpnII GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 949
EaeI YGGCCR 2 cut(s) 78, 860
Eam1104I CTCTTC 3 cut(s) 134, 318, 912
EarI CTCTTC 3 cut(s) 134, 318, 912
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 8 cut(s) 190, 211, 251, 450, 565, 687, 716, 917
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 149, 181
FaqI GGGAC 2 cut(s) 400, 781
FatI CATG 8 cut(s) 186, 207, 247, 446, 561, 683, 712, 913
FauI CCCGC 1 cut(s) 672
Fnu4HI GCNGC 3 cut(s) 6, 78, 774
FokI GGATG 2 cut(s) 208, 656
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 6, 78, 774
FspBI CTAG 4 cut(s) 395, 440, 929, 958
GluI GCNGC 3 cut(s) 6, 78, 774
HaeIII GGCC 3 cut(s) 30, 80, 862
HapII CCGG 3 cut(s) 24, 72, 102
HgaI GACGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 8 cut(s) 190, 211, 251, 450, 565, 687, 716, 917
HinfI GANTC 1 cut(s) 943
HpaII CCGG 3 cut(s) 24, 72, 102
HphI GGTGA 2 cut(s) 308, 428
Hpy166II GTNNAC 2 cut(s) 291, 926
Hpy188I TCNGA 3 cut(s) 184, 601, 619
Hpy188III TCNNGA 5 cut(s) 225, 673, 713, 758, 947
Hpy8I GTNNAC 2 cut(s) 291, 926
Hpy99I CGWCG 6 cut(s) 13, 40, 98, 283, 301, 831
HpyAV CCTTC 2 cut(s) 100, 163
HpyCH4III ACNGT 4 cut(s) 320, 325, 406, 893
HpyCH4IV ACGT 3 cut(s) 35, 123, 762
HpyCH4V TGCA 3 cut(s) 521, 575, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 77, 204, 466, 868
HpyF3I CTNAG 3 cut(s) 751, 820, 902
HpySE526I ACGT 3 cut(s) 35, 123, 762
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 8 cut(s) 190, 211, 251, 450, 565, 687, 716, 917
Kzo9I GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 949
LmnI GCTCC 3 cut(s) 74, 104, 144
Lsp1109I GCAGC 1 cut(s) 760
LweI GCATC 2 cut(s) 610, 941
MaeI CTAG 4 cut(s) 395, 440, 929, 958
MaeII ACGT 3 cut(s) 35, 123, 762
MaeIII GTNAC 3 cut(s) 239, 400, 434
MalI GATC 7 cut(s) 45, 219, 415, 682, 732, 852, 951
MbiI CCGCTC 2 cut(s) 77, 667
MboI GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 949
MboII GAAGA 8 cut(s) 121, 157, 193, 259, 305, 362, 888, 929
MflI RGATCY 2 cut(s) 217, 850
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 862
MluCI AATT 3 cut(s) 522, 793, 814
MluNI TGGCCA 1 cut(s) 862
MmeI TCCRAC 2 cut(s) 207, 624
MnlI CCTC 8 cut(s) 20, 95, 125, 137, 182, 221, 352, 829
Mox20I TGGCCA 1 cut(s) 862
MscI TGGCCA 1 cut(s) 862
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 2 cut(s) 375, 560
Msp20I TGGCCA 1 cut(s) 862
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 3 cut(s) 24, 72, 102
Mva1269I GAATGC 1 cut(s) 708
MwoI GCNNNNNNNGC 5 cut(s) 68, 77, 204, 466, 868
NdeII GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 949
NlaIII CATG 8 cut(s) 190, 211, 251, 450, 565, 687, 716, 917
NlaIV GGNNCC 4 cut(s) 100, 219, 697, 884
NmuCI GTSAC 2 cut(s) 400, 434
NspI RCATGY 2 cut(s) 190, 565
NspV TTCGAA 1 cut(s) 874
PaeI GCATGC 1 cut(s) 565
PagI TCATGA 1 cut(s) 712
PceI AGGCCT 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 708
PfeI GAWTC 1 cut(s) 943
Pfl23II CGTACG 1 cut(s) 39
PkrI GCNGC 3 cut(s) 7, 79, 775
Ple19I CGATCG 1 cut(s) 46
PshAI GACNNNNGTC 1 cut(s) 62
PsiI TTATAA 1 cut(s) 494
Psp124BI GAGCTC 1 cut(s) 141
PspLI CGTACG 1 cut(s) 39
PspN4I GGNNCC 4 cut(s) 100, 219, 697, 884
PsuI RGATCY 2 cut(s) 217, 850
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 5 cut(s) 41, 322, 445, 472, 659
RsaNI GTAC 5 cut(s) 40, 321, 444, 471, 658
RseI CAYNNNNRTG 2 cut(s) 375, 560
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 3 cut(s) 6, 78, 774
Sau3AI GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 949
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 2 cut(s) 610, 941
SfcI CTRYAG 1 cut(s) 253
SfuI TTCGAA 1 cut(s) 874
SmiMI CAYNNNNRTG 2 cut(s) 375, 560
SpeI ACTAGT 1 cut(s) 394
SphI GCATGC 1 cut(s) 565
Sse9I AATT 3 cut(s) 522, 793, 814
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 7 cut(s) 5, 62, 77, 142, 604, 665, 706
SspI AATATT 1 cut(s) 741
SspMI CTAG 4 cut(s) 395, 440, 929, 958
SstI GAGCTC 1 cut(s) 141
StuI AGGCCT 1 cut(s) 30
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 4 cut(s) 320, 325, 406, 893
TaiI ACGT 3 cut(s) 38, 126, 765
TaqI TCGA 2 cut(s) 826, 874
TasI AATT 3 cut(s) 522, 793, 814
TauI GCSGC 2 cut(s) 8, 80
TfiI GAWTC 1 cut(s) 943
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 2 cut(s) 400, 434
TseI GCWGC 1 cut(s) 773
Tsp45I GTSAC 2 cut(s) 400, 434
TspDTI ATGAA 4 cut(s) 97, 359, 701, 930
XapI RAATTY 1 cut(s) 814
XceI RCATGY 2 cut(s) 190, 565
XmaJI CCTAGG 1 cut(s) 439
XspI CTAG 4 cut(s) 395, 440, 929, 958
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.