Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020242

Physical Location & Seq

Genomic Coordinates Reverse (-)

18184654 .. 18187529

Gene Structure 2876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGATGATGCTTGATGATTACATAGCGAAATCGAAGCTCAGTGAGAGTTTAACCTCTACGGTTTGGTTAGCGAAGCACAAGTTAACCGGCGAAGAAGCAGTGATGAAGTGTTTCGACCTCTCGAAGCTCAATCGCAATCTCCGAGACTGTTTAAACAACGAACTGGAGTTTCTATCTTCTGTTGATCATCCCAATATCATTCGTCTCCTCCATGTTTCTCAAGATGATGATTTTCTCGTTATGGTTTTGGAATATTGTGATGGAGGAACTTTATCATCGTATATTCAACGTTATGGTAGAGTTGAAGAAGATATCGCCAAGAGATTTATGAAGCAAATTGGAGCTGGTTTGGAAATTATTCATGATAATCACATTATCCATAGAGACTTGAAACCTGAGAATATTTTAATTGACGGATCTGGTGATGATTTGGTGTTGAAGATTGCCGATTTTAGTCTTGCAAGAAAACTACATCCGGGCAAGTATCTTGAAACAGTGTGTGGTTCTCCGTTTTACATGGCTCCTGAAGTTCTTCAGTTTCAGAGATACAATGAAAAGGCTGATATGTGGAGTGTAGGAGCAATCCTTTTCGAGCTACTTCACGGGTATCCACCATTCCGTGGTAATAACAATGTTCAGGTTCTAAGGAACATCAAATCTAGTACAGCTCTTCCATTCTCTCGGCTTATTCTTCAACAGATGCATCCTGATTGCATCGACGTCTGCTCAAGATTGCTTTCTATTAACCCAGCTGCCACACTGGGCATAGAAGATTTTCCTTTTCTTGGCCGTATAAAGAACAGTAGGGTTTGGGTCAAGGACACAACATTTTCTTCAAGACAACATGGAACAAGGGAAAGAAAAGTGGCTACAATTAACGGAAGACTTCAATTTGACCTTTCACAGGATGCATACCTCCCACAGAGGCTTCTTGAAAACCTGATGTATATTTACAATACTATTGAAATGGCTCGTGTAACTGGAGTCCCTACCTCCTACCTTATTTCAAGAGGAGAGAGCATCAAGGTTCTATCTCAACTACTTAGGAAAGCTAAACAGAAAACCTGGTTCTTCCAAATGCTGAGAAGTTGGAACCTGAACAAGGAACTTATGAAGGTGCAACTGTACGTTGGTGGTTTTATATCCCCTACTTACAGTTTTACTTATTCTTCGATCACTTCTAATATTTTGATAAACATCTCCAATGATATATATTCACACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008589 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010646 GO:0010647 GO:0010648 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023056 GO:0023057 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045879 GO:0045880 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

408

Amino Acids

46.84

Weight (kDa)

8.34

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 256	5.8e-64	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 234	1.5e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49180 AT1G49180
malus_domestica	MD01G1113800.v1.1 MD07G1181900.v1.1
prunus_persica	Prupe.6G164600_v2.0.a1 Prupe.6G165600_v2.0.a1

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	723
AccB7I	CCANNNNNTGG	1 cut(s)	620
AclI	AACGTT	1 cut(s)	289
AclWI	GGATC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	787
AcuI	CTGAAG	2 cut(s)	518, 546
AcyI	GRCGYC	1 cut(s)	720
AfaI	GTAC	2 cut(s)	664, 1127
AfiI	CCNNNNNNNGG	4 cut(s)	620, 785, 904, 1102
AjnI	CCWGG	1 cut(s)	1064
AluBI	AGCT	7 cut(s)	37, 127, 344, 595, 668, 752, 1052
AluI	AGCT	7 cut(s)	37, 127, 344, 595, 668, 752, 1052
Alw26I	GTCTC	3 cut(s)	138, 209, 378
AlwI	GGATC	1 cut(s)	424
AoxI	GGCC	1 cut(s)	787
ApeKI	GCWGC	1 cut(s)	752
Asp700I	GAANNNNTTC	4 cut(s)	110, 357, 531, 774
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	434
BauI	CACGAG	1 cut(s)	972
BbsI	GAAGAC	1 cut(s)	889
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	774
BciT130I	CCWGG	1 cut(s)	1066
BciVI	GTATCC	1 cut(s)	618
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	3 cut(s)	138, 209, 378
BfaI	CTAG	1 cut(s)	660
BfuI	GTATCC	1 cut(s)	618
BisI	GCNGC	1 cut(s)	753
BlsI	GCNGC	1 cut(s)	754
Bme1390I	CCNGG	2 cut(s)	477, 1066
BmiI	GGNNCC	2 cut(s)	522, 1094
BmrFI	CCNGG	2 cut(s)	477, 1066
BmrI	ACTGGG	1 cut(s)	770
BmsI	GCATC	5 cut(s)	690, 712, 723, 898, 1029
BmuI	ACTGGG	1 cut(s)	770
BpiI	GAAGAC	1 cut(s)	889
BpmI	CTGGAG	2 cut(s)	185, 1002
BpuEI	CTTGAG	2 cut(s)	204, 712
BpuMI	CCSGG	1 cut(s)	477
BsaBI	GATNNNNATC	1 cut(s)	1196
BsaHI	GRCGYC	1 cut(s)	720
BsaJI	CCNNGG	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	4 cut(s)	620, 785, 904, 1102
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	3 cut(s)	168, 765, 985
Bse8I	GATNNNNATC	1 cut(s)	1196
BseBI	CCWGG	1 cut(s)	1066
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	4 cut(s)	187, 472, 703, 913
BseJI	GATNNNNATC	1 cut(s)	1196
BseLI	CCNNNNNNNGG	4 cut(s)	620, 785, 904, 1102
BseMII	CTCAG	3 cut(s)	52, 387, 1073
BseNI	ACTGG	3 cut(s)	168, 765, 985
BseRI	GAGGAG	2 cut(s)	197, 1026
BseXI	GCAGC	1 cut(s)	739
BseYI	CCCAGC	1 cut(s)	748
BshFI	GGCC	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	87, 476
BslFI	GGGAC	1 cut(s)	971
BslI	CCNNNNNNNGG	4 cut(s)	620, 785, 904, 1102
BsmAI	GTCTC	3 cut(s)	138, 209, 378
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	971
BsnI	GGCC	1 cut(s)	789
Bsp143I	GATC	3 cut(s)	184, 416, 1173
BspANI	GGCC	1 cut(s)	789
BspCNI	CTCAG	3 cut(s)	51, 388, 1074
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	522, 1094
BspPI	GGATC	1 cut(s)	424
BspQI	GCTCTTC	1 cut(s)	675
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	3 cut(s)	168, 765, 985
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	3 cut(s)	184, 416, 1173
BssNI	GRCGYC	1 cut(s)	720
BssSI	CACGAG	1 cut(s)	972
Bst2BI	CACGAG	1 cut(s)	972
Bst2UI	CCWGG	1 cut(s)	1066
Bst4CI	ACNGT	7 cut(s)	61, 149, 496, 803, 1125, 1157, 1223
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	1 cut(s)	720
BstDEI	CTNAG	5 cut(s)	38, 396, 644, 1043, 1082
BstDSI	CCRYGG	1 cut(s)	619
BstENI	CCTNNNNNAGG	2 cut(s)	902, 1100
BstF5I	GGATG	4 cut(s)	187, 472, 703, 913
BstKTI	GATC	3 cut(s)	187, 419, 1176
BstMAI	GTCTC	3 cut(s)	138, 209, 378
BstMBI	GATC	3 cut(s)	184, 416, 1173
BstNI	CCWGG	1 cut(s)	1066
BstSCI	CCNGG	2 cut(s)	475, 1064
BstV1I	GCAGC	1 cut(s)	739
BstV2I	GAAGAC	1 cut(s)	889
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	618
BsuRI	GGCC	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	619
BtsCI	GGATG	4 cut(s)	187, 472, 703, 913
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	5 cut(s)	46, 105, 501, 758, 1219
CciI	TCATGA	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	1064
Csp6I	GTAC	2 cut(s)	663, 1126
CviAII	CATG	4 cut(s)	212, 362, 517, 845
CviQI	GTAC	2 cut(s)	663, 1126
DdeI	CTNAG	5 cut(s)	38, 396, 644, 1043, 1082
DpnI	GATC	3 cut(s)	186, 418, 1175
DpnII	GATC	3 cut(s)	184, 416, 1173
DraI	TTTAAA	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	787
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
Eco32I	GATATC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	518, 546
EcoNI	CCTNNNNNAGG	2 cut(s)	902, 1100
EcoRII	CCWGG	1 cut(s)	1064
EcoRV	GATATC	1 cut(s)	313
EcoT22I	ATGCAT	2 cut(s)	705, 913
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	4 cut(s)	215, 365, 520, 848
FaqI	GGGAC	1 cut(s)	971
FatI	CATG	4 cut(s)	211, 361, 516, 844
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	753
FokI	GGATG	4 cut(s)	174, 459, 690, 920
Fsp4HI	GCNGC	1 cut(s)	753
FspBI	CTAG	1 cut(s)	660
GluI	GCNGC	1 cut(s)	753
GsaI	CCCAGC	1 cut(s)	752
GsuI	CTGGAG	2 cut(s)	185, 1002
HaeIII	GGCC	1 cut(s)	789
HapII	CCGG	2 cut(s)	87, 476
Hin1I	GRCGYC	1 cut(s)	720
Hin1II	CATG	4 cut(s)	215, 365, 520, 848
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	984
HpaI	GTTAAC	1 cut(s)	84
HpaII	CCGG	2 cut(s)	87, 476
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	2 cut(s)	143, 543
Hpy8I	GTNNAC	1 cut(s)	84
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	1 cut(s)	1108
HpyCH4III	ACNGT	7 cut(s)	61, 149, 496, 803, 1125, 1157, 1223
HpyCH4IV	ACGT	3 cut(s)	289, 720, 1128
HpyCH4V	TGCA	5 cut(s)	461, 703, 714, 911, 1120
HpyF3I	CTNAG	5 cut(s)	38, 396, 644, 1043, 1082
HpySE526I	ACGT	3 cut(s)	289, 720, 1128
Hsp92I	GRCGYC	1 cut(s)	720
Hsp92II	CATG	4 cut(s)	215, 365, 520, 848
Ksp22I	TGATCA	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	184, 416, 1173
LguI	GCTCTTC	1 cut(s)	675
LmnI	GCTCC	3 cut(s)	341, 526, 578
Lsp1109I	GCAGC	1 cut(s)	739
LweI	GCATC	5 cut(s)	690, 712, 723, 898, 1029
MabI	ACCWGGT	1 cut(s)	1064
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	3 cut(s)	289, 720, 1128
MaeIII	GTNAC	1 cut(s)	976
MalI	GATC	3 cut(s)	186, 418, 1175
MboI	GATC	3 cut(s)	184, 416, 1173
MflI	RGATCY	1 cut(s)	416
MluCI	AATT	5 cut(s)	336, 354, 408, 873, 890
MlyI	GAGTC	1 cut(s)	993
MmeI	TCCRAC	1 cut(s)	1070
MnlI	CCTC	8 cut(s)	64, 128, 218, 257, 918, 926, 1003, 1004
Mph1103I	ATGCAT	2 cut(s)	705, 913
MroXI	GAANNNNTTC	4 cut(s)	110, 357, 531, 774
MseI	TTAA	7 cut(s)	50, 83, 152, 407, 744, 876, 1225
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	2 cut(s)	87, 476
MspR9I	CCNGG	2 cut(s)	477, 1066
MssI	GTTTAAAC	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	1066
NciI	CCSGG	1 cut(s)	477
NdeII	GATC	3 cut(s)	184, 416, 1173
NlaIII	CATG	4 cut(s)	215, 365, 520, 848
NlaIV	GGNNCC	2 cut(s)	522, 1094
NmeAIII	GCCGAG	1 cut(s)	661
NsiI	ATGCAT	2 cut(s)	705, 913
PagI	TCATGA	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PdmI	GAANNNNTTC	4 cut(s)	110, 357, 531, 774
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	1 cut(s)	754
PleI	GAGTC	1 cut(s)	992
PmeI	GTTTAAAC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	992
Psp1406I	AACGTT	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	1064
PspFI	CCCAGC	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	1064
PspN4I	GGNNCC	2 cut(s)	522, 1094
PsuI	RGATCY	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	2 cut(s)	664, 1127
RsaNI	GTAC	2 cut(s)	663, 1126
SapI	GCTCTTC	1 cut(s)	675
SaqAI	TTAA	7 cut(s)	50, 83, 152, 407, 744, 876, 1225
SatI	GCNGC	1 cut(s)	753
Sau3AI	GATC	3 cut(s)	184, 416, 1173
SchI	GAGTC	1 cut(s)	993
ScrFI	CCNGG	2 cut(s)	477, 1066
SexAI	ACCWGGT	1 cut(s)	1064
SfaNI	GCATC	5 cut(s)	690, 712, 723, 898, 1029
SmlI	CTYRAG	2 cut(s)	219, 727
SmoI	CTYRAG	2 cut(s)	219, 727
Sse9I	AATT	5 cut(s)	336, 354, 408, 873, 890
SspI	AATATT	3 cut(s)	254, 403, 1186
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	475, 1064
TaaI	ACNGT	7 cut(s)	61, 149, 496, 803, 1125, 1157, 1223
TaiI	ACGT	3 cut(s)	292, 723, 1131
TaqI	TCGA	6 cut(s)	32, 114, 122, 591, 717, 1172
TasI	AATT	5 cut(s)	336, 354, 408, 873, 890
TatI	WGTACW	1 cut(s)	662
Tru1I	TTAA	7 cut(s)	50, 83, 152, 407, 744, 876, 1225
Tru9I	TTAA	7 cut(s)	50, 83, 152, 407, 744, 876, 1225
TscAI	CASTG	5 cut(s)	46, 105, 501, 765, 1226
TseI	GCWGC	1 cut(s)	752
TspDTI	ATGAA	5 cut(s)	119, 344, 350, 567, 1127
TspGWI	ACGGA	4 cut(s)	429, 498, 608, 894
TspRI	CASTG	5 cut(s)	46, 105, 501, 765, 1226
Van91I	CCANNNNNTGG	1 cut(s)	620
XagI	CCTNNNNNAGG	2 cut(s)	902, 1100
XmnI	GAANNNNTTC	4 cut(s)	110, 357, 531, 774
XspI	CTAG	1 cut(s)	660
ZraI	GACGTC	1 cut(s)	721
Zsp2I	ATGCAT	2 cut(s)	705, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.