Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0020242

Physical Location & Seq

Genomic Coordinates Forward (+)

22850732 .. 22852760

Gene Structure 2029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1113800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAAGCTGAAAGCAAGGGTGTTGTCTCCGCACTCAAAGGGGACTATATTGTGATATCAGAGGTGGGACGAGGCTCTTTCTCCACCGTTTGGAAAGCCGTGCACCGGCAAAGCGGCAAGGTGGTGGCTCTCAAGCAGGTCCACCTTTCCCGACTCAACCGCCACCTCAAGAACTGCTTGGATTGCGAGCTCAATTTCTTATCCTCCGTTAACCACCCAAACATCATCCGCCTCCTCAATGCTTTCCAGGATGAAAGCTGCATATTCATGGTGTTGGAGTTTTGTGATGGGGGAAATCTGGCTGCTTATATCCGGCAGCACGGGCAAGTTGAAGAACAGATTGCCAAGAGATTTATGCAGCAGCTTGGAGCCGCGTTGAAAATACTACATTCGCACCACATCATTCATCGAGACTTGAAACCGGAGAACATTCTACTCTCTGGCACTCAAGATGATGCGGTGCTAAAGGTAGCTGATTTCGGCCTCTCAAGAAGTTTACATCCAGGTGATTATGCGGAGACAGTTTGTGGATCCCCGTTGTACATGGCACCTGAAGTTCTTCAGTTTGAAAGATACGATGGGAAGGTTGACATGTGGAGTATTGGCGTAATTCTTTTCGAGCTTCTCAATGGTCGCCCTCCTTTCCCTGGTAGGACTAATGTTCAGGTGCTTAAGACCATCAAGTCATCCACATACCTTCCTTTCGACGAAGTCATCCTTTCTAGATTGCATCCTGACTCTGTCGATATGTGTTCAAAACTGTTGTCTCCAAATCCAGTTAAGCGCCTGTCCTTCAGCGAATTCTATTCGCACAGTTTTTTGCAAGGTTTTTTAGAAGAGTTGAGATGTGAAATAATTACGGGTACACAAATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008589 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010646 GO:0010647 GO:0010648 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023056 GO:0023057 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045879 GO:0045880 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

293

Amino Acids

32.89

Weight (kDa)

6.63

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 274	7.5e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 268	2e-44	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	89 - 168	7.3e-06	ABC1 atypical kinase-like domain
Kdo	PF06293	99 - 162	5.7e-07	Lipopolysaccharide kinase (Kdo/WaaP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49180 AT1G49180
malus_domestica	MD01G1113800.v1.1 MD07G1181900.v1.1
prunus_persica	Prupe.6G164600_v2.0.a1 Prupe.6G165600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	682
Acc36I	ACCTGC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccII	CGCG	1 cut(s)	374
AciI	CCGC	7 cut(s)	30, 114, 160, 229, 372, 458, 515
AclWI	GGATC	2 cut(s)	525, 538
AcsI	RAATTY	1 cut(s)	800
AcuI	CTGAAG	3 cut(s)	545, 573, 778
AfaI	GTAC	2 cut(s)	542, 865
AfiI	CCNNNNNNNGG	3 cut(s)	90, 105, 647
AflII	CTTAAG	1 cut(s)	671
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	5 cut(s)	332, 379, 418, 569, 756
AjnI	CCWGG	3 cut(s)	246, 502, 646
AluBI	AGCT	6 cut(s)	8, 190, 258, 364, 473, 622
AluI	AGCT	6 cut(s)	8, 190, 258, 364, 473, 622
Alw21I	GWGCWC	2 cut(s)	105, 192
Alw26I	GTCTC	4 cut(s)	31, 405, 512, 771
Alw44I	GTGCAC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	525, 538
AoxI	GGCC	1 cut(s)	481
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	5 cut(s)	258, 302, 316, 358, 361
ApoI	RAATTY	1 cut(s)	800
ArsI	GACNNNNNNTTYG	2 cut(s)	749, 781
Asp700I	GAANNNNTTC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	786
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	105
BamHI	GGATCC	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	105, 192
BbvI	GCAGC	5 cut(s)	245, 289, 328, 370, 373
BccI	CCATC	3 cut(s)	281, 572, 686
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	3 cut(s)	248, 504, 648
BcoDI	GTCTC	4 cut(s)	31, 405, 512, 771
BfaI	CTAG	2 cut(s)	723, 877
BfoI	RGCGCY	1 cut(s)	787
BfrI	CTTAAG	1 cut(s)	671
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	7 cut(s)	115, 259, 303, 317, 359, 362, 372
BlsI	GCNGC	7 cut(s)	116, 260, 304, 318, 360, 363, 373
Bme1390I	CCNGG	3 cut(s)	248, 504, 648
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	370, 532, 549
BmrFI	CCNGG	3 cut(s)	248, 504, 648
BmsI	GCATC	2 cut(s)	445, 739
BpuEI	CTTGAG	4 cut(s)	116, 152, 432, 472
BsaJI	CCNNGG	1 cut(s)	646
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 105, 647
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	776
BseBI	CCWGG	3 cut(s)	248, 504, 648
BseDI	CCNNGG	1 cut(s)	646
BseGI	GGATG	6 cut(s)	225, 256, 499, 686, 714, 730
BseLI	CCNNNNNNNGG	3 cut(s)	90, 105, 647
BseNI	ACTGG	1 cut(s)	776
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	5 cut(s)	245, 289, 328, 370, 373
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	547
BsiHKAI	GWGCWC	2 cut(s)	105, 192
BsiSI	CCGG	3 cut(s)	106, 313, 422
BslFI	GGGAC	2 cut(s)	56, 81
BslI	CCNNNNNNNGG	3 cut(s)	90, 105, 647
BsmAI	GTCTC	4 cut(s)	31, 405, 512, 771
BsmFI	GGGAC	2 cut(s)	56, 81
BsnI	GGCC	1 cut(s)	483
Bsp1286I	GDGCHC	2 cut(s)	105, 192
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	1 cut(s)	530
BspACI	CCGC	7 cut(s)	30, 114, 160, 229, 372, 458, 515
BspANI	GGCC	1 cut(s)	483
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	3 cut(s)	370, 532, 549
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	2 cut(s)	525, 538
BspT107I	GGYRCC	1 cut(s)	547
BspTI	CTTAAG	1 cut(s)	671
BsrFI	RCCGGY	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	776
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	646
BssMI	GATC	1 cut(s)	530
Bst2UI	CCWGG	3 cut(s)	248, 504, 648
Bst4CI	ACNGT	4 cut(s)	88, 523, 762, 815
Bst6I	CTCTTC	1 cut(s)	831
BstAFI	CTTAAG	1 cut(s)	671
BstAUI	TGTACA	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	188
BstF5I	GGATG	6 cut(s)	225, 256, 499, 686, 714, 730
BstFNI	CGCG	1 cut(s)	374
BstH2I	RGCGCY	1 cut(s)	787
BstHHI	GCGC	1 cut(s)	786
BstKTI	GATC	1 cut(s)	533
BstMAI	GTCTC	4 cut(s)	31, 405, 512, 771
BstMBI	GATC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 322
BstNI	CCWGG	3 cut(s)	248, 504, 648
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	3 cut(s)	246, 502, 646
BstSLI	GKGCMC	1 cut(s)	105
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	5 cut(s)	245, 289, 328, 370, 373
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	483
BtsCI	GGATG	6 cut(s)	225, 256, 499, 686, 714, 730
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	1 cut(s)	786
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	541, 864
CviAII	CATG	3 cut(s)	268, 544, 592
CviQI	GTAC	2 cut(s)	541, 864
DpnI	GATC	1 cut(s)	532
DpnII	GATC	1 cut(s)	530
DrdI	GACNNNNNNGTC	1 cut(s)	682
DseDI	GACNNNNNNGTC	1 cut(s)	682
Eam1104I	CTCTTC	1 cut(s)	831
EarI	CTCTTC	1 cut(s)	831
EciI	GGCGGA	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	3 cut(s)	545, 573, 778
EcoICRI	GAGCTC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	3 cut(s)	246, 502, 646
EcoRV	GATATC	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	3 cut(s)	271, 547, 595
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 702, 734
FaqI	GGGAC	2 cut(s)	56, 81
FatI	CATG	3 cut(s)	267, 543, 591
Fnu4HI	GCNGC	7 cut(s)	115, 259, 303, 317, 359, 362, 372
FokI	GGATG	6 cut(s)	212, 263, 486, 673, 701, 717
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	7 cut(s)	115, 259, 303, 317, 359, 362, 372
FspBI	CTAG	2 cut(s)	723, 877
GlaI	GCGC	1 cut(s)	785
GluI	GCNGC	7 cut(s)	115, 259, 303, 317, 359, 362, 372
HaeII	RGCGCY	1 cut(s)	787
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	3 cut(s)	106, 313, 422
HhaI	GCGC	1 cut(s)	786
Hin1II	CATG	3 cut(s)	271, 547, 595
Hin6I	GCGC	1 cut(s)	784
HinP1I	GCGC	1 cut(s)	784
HincII	GTYRAC	2 cut(s)	211, 589
HindII	GTYRAC	2 cut(s)	211, 589
HinfI	GANTC	2 cut(s)	153, 737
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	3 cut(s)	106, 313, 422
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	6 cut(s)	103, 142, 211, 497, 589, 866
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	7 cut(s)	150, 169, 410, 449, 489, 723, 734
Hpy8I	GTNNAC	6 cut(s)	103, 142, 211, 497, 589, 866
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	3 cut(s)	577, 707, 802
HpyCH4III	ACNGT	4 cut(s)	88, 523, 762, 815
HpyCH4V	TGCA	5 cut(s)	103, 261, 358, 730, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 322
Hsp92II	CATG	3 cut(s)	271, 547, 595
HspAI	GCGC	1 cut(s)	784
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	530
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	5 cut(s)	245, 289, 328, 370, 373
LweI	GCATC	2 cut(s)	445, 739
MaeI	CTAG	2 cut(s)	723, 877
MalI	GATC	1 cut(s)	532
MboI	GATC	1 cut(s)	530
MboII	GAAGA	3 cut(s)	344, 551, 848
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	105, 192
MluCI	AATT	4 cut(s)	193, 609, 800, 855
MlyI	GAGTC	2 cut(s)	147, 731
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	8 cut(s)	55, 65, 176, 214, 242, 245, 494, 648
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	3 cut(s)	210, 672, 780
MslI	CAYNNNNRTG	2 cut(s)	266, 504
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	3 cut(s)	106, 313, 422
MspR9I	CCNGG	3 cut(s)	248, 504, 648
MvaI	CCWGG	3 cut(s)	248, 504, 648
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	183, 322
NdeII	GATC	1 cut(s)	530
NlaIII	CATG	3 cut(s)	271, 547, 595
NlaIV	GGNNCC	3 cut(s)	370, 532, 549
NspI	RCATGY	1 cut(s)	595
PciI	ACATGT	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	558
PflFI	GACNNNGTC	2 cut(s)	710, 740
PflMI	CCANNNNNTGG	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	7 cut(s)	116, 260, 304, 318, 360, 363, 373
PleI	GAGTC	2 cut(s)	147, 731
PpsI	GAGTC	2 cut(s)	147, 731
PscI	ACATGT	1 cut(s)	591
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	3 cut(s)	246, 502, 646
PspGI	CCWGG	3 cut(s)	246, 502, 646
PspN4I	GGNNCC	3 cut(s)	370, 532, 549
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	530
PsyI	GACNNNGTC	2 cut(s)	710, 740
RsaI	GTAC	2 cut(s)	542, 865
RsaNI	GTAC	2 cut(s)	541, 864
RseI	CAYNNNNRTG	2 cut(s)	266, 504
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	210, 672, 780
SatI	GCNGC	7 cut(s)	115, 259, 303, 317, 359, 362, 372
Sau3AI	GATC	1 cut(s)	530
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	2 cut(s)	147, 731
ScrFI	CCNGG	3 cut(s)	248, 504, 648
SduI	GDGCHC	2 cut(s)	105, 192
SfaNI	GCATC	2 cut(s)	445, 739
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	2 cut(s)	266, 504
SmlI	CTYRAG	5 cut(s)	131, 167, 447, 487, 671
SmoI	CTYRAG	5 cut(s)	131, 167, 447, 487, 671
Sse9I	AATT	4 cut(s)	193, 609, 800, 855
SsiI	CCGC	7 cut(s)	30, 114, 160, 229, 372, 458, 515
SspMI	CTAG	2 cut(s)	723, 877
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	3 cut(s)	246, 502, 646
TaaI	ACNGT	4 cut(s)	88, 523, 762, 815
TaqI	TCGA	4 cut(s)	409, 618, 705, 744
TasI	AATT	4 cut(s)	193, 609, 800, 855
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	2 cut(s)	117, 374
Tru1I	TTAA	3 cut(s)	210, 672, 780
Tru9I	TTAA	3 cut(s)	210, 672, 780
TseI	GCWGC	5 cut(s)	258, 302, 316, 358, 361
TspDTI	ATGAA	3 cut(s)	256, 267, 395
TspGWI	ACGGA	1 cut(s)	196
Tth111I	GACNNNGTC	2 cut(s)	710, 740
Van91I	CCANNNNNTGG	1 cut(s)	90
Vha464I	CTTAAG	1 cut(s)	671
VneI	GTGCAC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	800
XbaI	TCTAGA	1 cut(s)	722
XceI	RCATGY	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	2 cut(s)	723, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.