Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0020242

Physical Location & Seq

Genomic Coordinates Reverse (-)

16116323 .. 16122219

Gene Structure 5897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G164600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAACCTGAAAGCAAGCCAAGTCTCTCTGAACTCAGCAGCACAGCAGCATTAGGAGATTACGTTCTGATATCAGAGGTTGGGGAAGGCTCTTTCTCCAGAGTGTGGAAAGCCGTGCACAGAGAAAGTGGGGAGGTGGTGGCTCTGAAGAAGGTCTTCCTCTCGCGGCTCAACAGGCGCCTCAAGAATTGCTTGGATTGCGAGATCAAATTCTTGTCCTCTATTTGCCACCCCAACGTCGTTCGTCTCCTCAAAGCTTTCCAGAATGAAGGTTGCATATTCCTGGTCCTGGAATTCTGCAATGGGGGAAATTTGGCAGCCTATATTCGGCAACATGGGAGAGTTCATGAACAGATCGCTAGGAAATTTATGCAGCAGCTTGGGGCTGGTTTGGAAATACTACATTCTCACCACATCATGCATAGAGACTTAAAACCAGAGAACATTCTACTCTCTCGCAGTGACGATGATGCAGTGCTAAAGGTAGCTGATTTCGGTCTCTCAAGAAGTTTACATCCAGGTGATTATGCGGAGACAGTTTGTGGATCCCCATTATACATGGCACCTGAAGTTCTTCAGTTTGAAAGATATGATGGAAAGGTGGACATGTGGAGTGTTGGTGTAATTCTTTTTGAGCTTCTTAATGGTTGCCCTCCTTTTCCTGGTAGGACTAATGTTCAGGTGCTTAAGAACATCAAGTCATCTACATGTCTCCCTTTTGACCAACTCATCCTTTCTCGGTTGCATCCAGACTCTGTTGATATATGTTCAAAACTGTTGTCTCGAAATCCAGGACCAGGATTCTCTACCAGGTTGGGATTTTATCTGGTTATACCAGGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008589 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010646 GO:0010647 GO:0010648 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023056 GO:0023057 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045879 GO:0045880 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

282

Amino Acids

31.38

Weight (kDa)

7.61

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49180 AT1G49180
malus_domestica	MD01G1113800.v1.1 MD07G1181900.v1.1
prunus_persica	Prupe.6G164600_v2.0.a1 Prupe.6G165600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	177, 562
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccII	CGCG	1 cut(s)	166
AciI	CCGC	2 cut(s)	166, 530
AclWI	GGATC	2 cut(s)	540, 553
AcsI	RAATTY	4 cut(s)	209, 293, 310, 365
AcuI	CTGAAG	3 cut(s)	167, 560, 588
AcyI	GRCGYC	1 cut(s)	178
AfiI	CCNNNNNNNGG	5 cut(s)	105, 289, 327, 662, 797
AflII	CTTAAG	1 cut(s)	686
AflIII	ACRYGT	2 cut(s)	606, 707
AgsI	TTSAA	2 cut(s)	584, 771
AjnI	CCWGG	8 cut(s)	282, 288, 517, 661, 790, 796, 809, 835
AloI	GAACNNNNNNTCC	2 cut(s)	48, 80
AluBI	AGCT	4 cut(s)	257, 379, 488, 637
AluI	AGCT	4 cut(s)	257, 379, 488, 637
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	7 cut(s)	29, 251, 420, 503, 527, 716, 786
Alw44I	GTGCAC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	540, 553
AlwNI	CAGNNNCTG	1 cut(s)	755
ApaLI	GTGCAC	1 cut(s)	116
ApeKI	GCWGC	5 cut(s)	39, 47, 317, 373, 376
ApoI	RAATTY	4 cut(s)	209, 293, 310, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
Asp700I	GAANNNNTTC	2 cut(s)	155, 573
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	286, 794
AsuHPI	GGTGA	2 cut(s)	401, 533
AvaII	GGWCC	2 cut(s)	286, 794
BaeGI	GKGCMC	1 cut(s)	120
BamHI	GGATCC	1 cut(s)	545
BanI	GGYRCC	2 cut(s)	177, 562
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	5 cut(s)	51, 59, 329, 385, 388
BccI	CCATC	1 cut(s)	587
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	8 cut(s)	284, 290, 519, 663, 792, 798, 811, 837
BcoDI	GTCTC	7 cut(s)	29, 251, 420, 503, 527, 716, 786
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	686
BisI	GCNGC	6 cut(s)	40, 48, 167, 318, 374, 377
BlsI	GCNGC	6 cut(s)	41, 49, 168, 319, 375, 378
Bme1390I	CCNGG	8 cut(s)	284, 290, 519, 663, 792, 798, 811, 837
Bme18I	GGWCC	2 cut(s)	286, 794
BmgT120I	GGNCC	2 cut(s)	286, 794
BmiI	GGNNCC	4 cut(s)	6, 179, 547, 564
BmrFI	CCNGG	8 cut(s)	284, 290, 519, 663, 792, 798, 811, 837
BmsI	GCATC	2 cut(s)	460, 754
BpiI	GAAGAC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	82
BpuEI	CTTGAG	2 cut(s)	167, 487
BsaHI	GRCGYC	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	836
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 604, 634
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 289, 327, 662, 797
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	8 cut(s)	284, 290, 519, 663, 792, 798, 811, 837
BseDI	CCNNGG	1 cut(s)	836
BseGI	GGATG	3 cut(s)	514, 729, 745
BseLI	CCNNNNNNNGG	5 cut(s)	105, 289, 327, 662, 797
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	5 cut(s)	51, 59, 329, 385, 388
Bsh1236I	CGCG	1 cut(s)	166
BshNI	GGYRCC	2 cut(s)	177, 562
BsiHKAI	GWGCWC	1 cut(s)	120
BslI	CCNNNNNNNGG	5 cut(s)	105, 289, 327, 662, 797
BsmAI	GTCTC	7 cut(s)	29, 251, 420, 503, 527, 716, 786
BsmBI	CGTCTC	1 cut(s)	251
Bso31I	GGTCTC	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	204, 354, 545
BspACI	CCGC	2 cut(s)	166, 530
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	4 cut(s)	6, 179, 547, 564
BspPI	GGATC	2 cut(s)	540, 553
BspT107I	GGYRCC	2 cut(s)	177, 562
BspTI	CTTAAG	1 cut(s)	686
BspTNI	GGTCTC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	836
BssMI	GATC	3 cut(s)	204, 354, 545
BssNI	GRCGYC	1 cut(s)	178
Bst2UI	CCWGG	8 cut(s)	284, 290, 519, 663, 792, 798, 811, 837
Bst4CI	ACNGT	2 cut(s)	538, 777
BstACI	GRCGYC	1 cut(s)	178
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	514, 729, 745
BstFNI	CGCG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	3 cut(s)	207, 357, 548
BstMAI	GTCTC	7 cut(s)	29, 251, 420, 503, 527, 716, 786
BstMBI	GATC	3 cut(s)	204, 354, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 198
BstNI	CCWGG	8 cut(s)	284, 290, 519, 663, 792, 798, 811, 837
BstNSI	RCATGY	2 cut(s)	610, 711
BstSCI	CCNGG	8 cut(s)	282, 288, 517, 661, 790, 796, 809, 835
BstSLI	GKGCMC	1 cut(s)	120
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	5 cut(s)	51, 59, 329, 385, 388
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	545
BtsCI	GGATG	3 cut(s)	514, 729, 745
BtsI	GCAGTG	2 cut(s)	466, 480
BtsIMutI	CAGTG	2 cut(s)	466, 480
Cac8I	GCNNGC	1 cut(s)	17
CaiI	CAGNNNCTG	1 cut(s)	755
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	286, 794
CsiI	ACCWGGT	1 cut(s)	809
CviAII	CATG	6 cut(s)	335, 347, 418, 559, 607, 708
DdeI	CTNAG	1 cut(s)	35
DinI	GGCGCC	1 cut(s)	179
DpnI	GATC	3 cut(s)	206, 356, 547
DpnII	GATC	3 cut(s)	204, 354, 545
Eco31I	GGTCTC	1 cut(s)	503
Eco32I	GATATC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	286, 794
Eco57I	CTGAAG	3 cut(s)	167, 560, 588
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	8 cut(s)	282, 288, 517, 661, 790, 796, 809, 835
EcoRV	GATATC	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	423
EgeI	GGCGCC	1 cut(s)	179
EheI	GGCGCC	1 cut(s)	179
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	6 cut(s)	338, 350, 421, 562, 610, 711
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 176, 208
FatI	CATG	6 cut(s)	334, 346, 417, 558, 606, 707
Fnu4HI	GCNGC	6 cut(s)	40, 48, 167, 318, 374, 377
FokI	GGATG	3 cut(s)	501, 716, 732
Fsp4HI	GCNGC	6 cut(s)	40, 48, 167, 318, 374, 377
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	6 cut(s)	40, 48, 167, 318, 374, 377
GsuI	CTGGAG	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	181
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	6 cut(s)	338, 350, 421, 562, 610, 711
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	2 cut(s)	752, 801
HphI	GGTGA	2 cut(s)	401, 533
Hpy166II	GTNNAC	3 cut(s)	118, 512, 604
Hpy188I	TCNGA	4 cut(s)	31, 69, 76, 147
Hpy188III	TCNNGA	7 cut(s)	99, 184, 262, 347, 504, 749, 783
Hpy8I	GTNNAC	3 cut(s)	118, 512, 604
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	80, 145, 263
HpyCH4III	ACNGT	2 cut(s)	538, 777
HpyCH4IV	ACGT	2 cut(s)	63, 237
HpyCH4V	TGCA	7 cut(s)	118, 276, 300, 373, 421, 473, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 198
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	2 cut(s)	63, 237
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	6 cut(s)	338, 350, 421, 562, 610, 711
HspAI	GCGC	1 cut(s)	178
KasI	GGCGCC	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	204, 354, 545
Lsp1109I	GCAGC	5 cut(s)	51, 59, 329, 385, 388
LweI	GCATC	2 cut(s)	460, 754
MabI	ACCWGGT	1 cut(s)	809
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	63, 237
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	3 cut(s)	206, 356, 547
MboI	GATC	3 cut(s)	204, 354, 545
MboII	GAAGA	3 cut(s)	148, 160, 566
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	6 cut(s)	187, 209, 293, 310, 365, 624
Mly113I	GGCGCC	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	746
MnlI	CCTC	7 cut(s)	70, 127, 170, 191, 229, 260, 663
Mph1103I	ATGCAT	1 cut(s)	423
MroXI	GAANNNNTTC	2 cut(s)	155, 573
MseI	TTAA	4 cut(s)	431, 642, 687, 844
MslI	CAYNNNNRTG	2 cut(s)	519, 706
MspCI	CTTAAG	1 cut(s)	686
MspR9I	CCNGG	8 cut(s)	284, 290, 519, 663, 792, 798, 811, 837
MvaI	CCWGG	8 cut(s)	284, 290, 519, 663, 792, 798, 811, 837
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	175, 198
NarI	GGCGCC	1 cut(s)	178
NdeII	GATC	3 cut(s)	204, 354, 545
NlaIII	CATG	6 cut(s)	338, 350, 421, 562, 610, 711
NlaIV	GGNNCC	4 cut(s)	6, 179, 547, 564
NmuCI	GTSAC	1 cut(s)	461
NsiI	ATGCAT	1 cut(s)	423
NspI	RCATGY	2 cut(s)	610, 711
PagI	TCATGA	1 cut(s)	346
PciI	ACATGT	2 cut(s)	606, 707
PdmI	GAANNNNTTC	2 cut(s)	155, 573
PfeI	GAWTC	1 cut(s)	801
PflMI	CCANNNNNTGG	1 cut(s)	105
PfoI	TCCNGGA	2 cut(s)	288, 790
PkrI	GCNGC	6 cut(s)	41, 49, 168, 319, 375, 378
PleI	GAGTC	1 cut(s)	746
PluTI	GGCGCC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	746
PscI	ACATGT	2 cut(s)	606, 707
Psp6I	CCWGG	8 cut(s)	282, 288, 517, 661, 790, 796, 809, 835
PspGI	CCWGG	8 cut(s)	282, 288, 517, 661, 790, 796, 809, 835
PspN4I	GGNNCC	4 cut(s)	6, 179, 547, 564
PspPI	GGNCC	2 cut(s)	286, 794
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	1 cut(s)	545
RseI	CAYNNNNRTG	2 cut(s)	519, 706
SaqAI	TTAA	4 cut(s)	431, 642, 687, 844
SatI	GCNGC	6 cut(s)	40, 48, 167, 318, 374, 377
Sau3AI	GATC	3 cut(s)	204, 354, 545
Sau96I	GGNCC	2 cut(s)	286, 794
SchI	GAGTC	1 cut(s)	746
ScrFI	CCNGG	8 cut(s)	284, 290, 519, 663, 792, 798, 811, 837
SduI	GDGCHC	1 cut(s)	120
SexAI	ACCWGGT	1 cut(s)	809
SfaNI	GCATC	2 cut(s)	460, 754
SfoI	GGCGCC	1 cut(s)	179
SinI	GGWCC	2 cut(s)	286, 794
SmiMI	CAYNNNNRTG	2 cut(s)	519, 706
SmlI	CTYRAG	3 cut(s)	182, 502, 686
SmoI	CTYRAG	3 cut(s)	182, 502, 686
Sse9I	AATT	6 cut(s)	187, 209, 293, 310, 365, 624
SsiI	CCGC	2 cut(s)	166, 530
SspDI	GGCGCC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	8 cut(s)	282, 288, 517, 661, 790, 796, 809, 835
TaaI	ACNGT	2 cut(s)	538, 777
TaiI	ACGT	2 cut(s)	66, 240
TaqI	TCGA	1 cut(s)	784
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	6 cut(s)	187, 209, 293, 310, 365, 624
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	801
Tru1I	TTAA	4 cut(s)	431, 642, 687, 844
Tru9I	TTAA	4 cut(s)	431, 642, 687, 844
TscAI	CASTG	2 cut(s)	466, 480
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	5 cut(s)	39, 47, 317, 373, 376
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	3 cut(s)	282, 335, 363
TspRI	CASTG	2 cut(s)	466, 480
Van91I	CCANNNNNTGG	1 cut(s)	105
Vha464I	CTTAAG	1 cut(s)	686
VneI	GTGCAC	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	286, 794
XapI	RAATTY	4 cut(s)	209, 293, 310, 365
XceI	RCATGY	2 cut(s)	610, 711
XmnI	GAANNNNTTC	2 cut(s)	155, 573
XspI	CTAG	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.