Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0020242

Physical Location & Seq

Genomic Coordinates Forward (+)

26245235 .. 26247257

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1181900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAACCTGAAAGCAAGGGACTCAAGACAGCTGAAGACGGAGAAGGAGAAGGAGACTACATTGTTATTTCAGAGGTGGGACGGGGCTCTTTTTCCACCGTGTCAAAAGCCGTGCACCGCCAAAGTGGCCAGGTGGTGGCTCTCAAGCAGGTCCACCTCTCGCGCCTCAACCGCCACCTCAAGAATTGCTTGGATTACGAGATCAATTTCCTGTCCTCCGTTAACCACCCCAACATCATCCGCCTCCTCAATTCTTTCCAGGATGAAGGTTGTGTATTCATGGTGTTGGAATTCTGTGATGGGGGAAATTTGGCTGCGTATATTCGGCGTCACGGAAGAGTTGAAGAACATATTGCCAAGAGATTTATGCAGCAGCTCGGGGCGGCGTTGGAAATACTACATTCGCACCACATCATTCATAGAGACTTGAAACCAGAGAACATTCTACTCTCTGGCACTCAAGATGATGTGGTGCTAAAGGTAGCTGATTTCGGTCTCTCGAGAAGTTTACATCCAGGTGATTATGCCGAGACAGTTTGTGGATCCCCATTGTACATGGCGCCTGAAGTTCTTCAGTTTGAAAGATATGACGGGAAGGTTGACATGTGGAGTATTGGTGTAATTCTTTTCGAGCTTCTCAATGGTCGCCCTCCTTTCCCTGGTAGGACTAATGTTCAGGTGCTTAAGACCATCAAGTCATCCACATACCTTCCTTTTGACCAAGTCATCCTTTCTAGACTGCATCCTGACTCCGTCGATATGTGTTCAAAACTGTTGTCTCGAAATCCAGTTAAGCGCCTGTCCTTCAGCGAATTCTATTCGCACAGGTTTTTTCAAGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008589 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010646 GO:0010647 GO:0010648 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023056 GO:0023057 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045879 GO:0045880 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

282

Amino Acids

31.77

Weight (kDa)

6.67

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 278	1.7e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 272	1.6e-43	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	93 - 172	2.9e-06	ABC1 atypical kinase-like domain
Kdo	PF06293	103 - 166	9.2e-06	Lipopolysaccharide kinase (Kdo/WaaP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49180 AT1G49180
malus_domestica	MD01G1113800.v1.1 MD07G1181900.v1.1
prunus_persica	Prupe.6G164600_v2.0.a1 Prupe.6G165600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	694
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	559
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	1 cut(s)	163
AciI	CCGC	4 cut(s)	118, 172, 241, 383
AclWI	GGATC	2 cut(s)	537, 550
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	3 cut(s)	290, 307, 812
AcuI	CTGAAG	4 cut(s)	54, 557, 585, 790
AcyI	GRCGYC	2 cut(s)	328, 560
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	2 cut(s)	136, 659
AflII	CTTAAG	1 cut(s)	683
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	5 cut(s)	344, 430, 581, 768, 836
AjnI	CCWGG	4 cut(s)	129, 258, 514, 658
AluBI	AGCT	4 cut(s)	32, 376, 485, 634
AluI	AGCT	4 cut(s)	32, 376, 485, 634
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	5 cut(s)	48, 417, 500, 524, 783
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	537, 550
Ama87I	CYCGRG	2 cut(s)	377, 499
AoxI	GGCC	1 cut(s)	127
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	3 cut(s)	314, 370, 373
ApoI	RAATTY	3 cut(s)	290, 307, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	761, 793
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	3 cut(s)	165, 562, 798
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	530
AvaI	CYCGRG	2 cut(s)	377, 499
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	301, 382, 385
BccI	CCATC	2 cut(s)	293, 698
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	4 cut(s)	131, 260, 516, 660
BcoDI	GTCTC	5 cut(s)	48, 417, 500, 524, 783
BfaI	CTAG	1 cut(s)	735
BfoI	RGCGCY	2 cut(s)	563, 799
BfrI	CTTAAG	1 cut(s)	683
BfuAI	ACCTGC	1 cut(s)	139
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	4 cut(s)	315, 371, 374, 384
BlsI	GCNGC	4 cut(s)	316, 372, 375, 385
Bme1390I	CCNGG	4 cut(s)	131, 260, 516, 660
Bme18I	GGWCC	1 cut(s)	151
BmeT110I	CYCGRG	2 cut(s)	377, 499
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	3 cut(s)	6, 544, 561
BmrFI	CCNGG	4 cut(s)	131, 260, 516, 660
BmsI	GCATC	1 cut(s)	751
BpiI	GAAGAC	1 cut(s)	42
BpuEI	CTTGAG	4 cut(s)	8, 128, 164, 444
BsaHI	GRCGYC	2 cut(s)	328, 560
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	658
BsaXI	ACNNNNNCTCC	2 cut(s)	601, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 659
Bse1I	ACTGG	1 cut(s)	788
BseBI	CCWGG	4 cut(s)	131, 260, 516, 660
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	6 cut(s)	237, 268, 511, 698, 726, 742
BseLI	CCNNNNNNNGG	2 cut(s)	136, 659
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	3 cut(s)	301, 382, 385
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	2 cut(s)	377, 499
BslFI	GGGAC	2 cut(s)	33, 93
BslI	CCNNNNNNNGG	2 cut(s)	136, 659
BsmAI	GTCTC	5 cut(s)	48, 417, 500, 524, 783
BsmFI	GGGAC	2 cut(s)	33, 93
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	2 cut(s)	377, 499
Bsp1286I	GDGCHC	2 cut(s)	89, 117
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	2 cut(s)	201, 542
BspACI	CCGC	4 cut(s)	118, 172, 241, 383
BspANI	GGCC	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	6, 544, 561
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	537, 550
BspT107I	GGYRCC	1 cut(s)	559
BspTI	CTTAAG	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	500
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	788
BssECI	CCNNGG	1 cut(s)	658
BssMI	GATC	2 cut(s)	201, 542
BssNI	GRCGYC	2 cut(s)	328, 560
Bst2UI	CCWGG	4 cut(s)	131, 260, 516, 660
Bst4CI	ACNGT	3 cut(s)	100, 535, 774
Bst6I	CTCTTC	1 cut(s)	331
BstACI	GRCGYC	2 cut(s)	328, 560
BstAFI	CTTAAG	1 cut(s)	683
BstAUI	TGTACA	1 cut(s)	552
BstF5I	GGATG	6 cut(s)	237, 268, 511, 698, 726, 742
BstFNI	CGCG	1 cut(s)	163
BstH2I	RGCGCY	2 cut(s)	563, 799
BstHHI	GCGC	3 cut(s)	165, 562, 798
BstKTI	GATC	2 cut(s)	204, 545
BstMAI	GTCTC	5 cut(s)	48, 417, 500, 524, 783
BstMBI	GATC	2 cut(s)	201, 542
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 171
BstNI	CCWGG	4 cut(s)	131, 260, 516, 660
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	4 cut(s)	129, 258, 514, 658
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	301, 382, 385
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	6 cut(s)	237, 268, 511, 698, 726, 742
BveI	ACCTGC	1 cut(s)	139
CfoI	GCGC	3 cut(s)	165, 562, 798
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	3 cut(s)	280, 556, 604
CviJI	RGCY	9 cut(s)	32, 87, 110, 129, 140, 314, 376, 485, 634
CviKI_1	RGCY	9 cut(s)	32, 87, 110, 129, 140, 314, 376, 485, 634
CviQI	GTAC	1 cut(s)	553
DinI	GGCGCC	1 cut(s)	561
DpnI	GATC	2 cut(s)	203, 544
DpnII	GATC	2 cut(s)	201, 542
DrdI	GACNNNNNNGTC	1 cut(s)	694
DseDI	GACNNNNNNGTC	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
EciI	GGCGGA	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	4 cut(s)	54, 557, 585, 790
Eco88I	CYCGRG	2 cut(s)	377, 499
EcoRI	GAATTC	2 cut(s)	290, 812
EcoRII	CCWGG	4 cut(s)	129, 258, 514, 658
EcoT38I	GRGCYC	1 cut(s)	89
EgeI	GGCGCC	1 cut(s)	561
EheI	GGCGCC	1 cut(s)	561
FaeI	CATG	3 cut(s)	283, 559, 607
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 714, 746
FaqI	GGGAC	2 cut(s)	33, 93
FatI	CATG	3 cut(s)	279, 555, 603
Fnu4HI	GCNGC	4 cut(s)	315, 371, 374, 384
FokI	GGATG	6 cut(s)	224, 275, 498, 685, 713, 729
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	4 cut(s)	315, 371, 374, 384
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	3 cut(s)	164, 561, 797
GluI	GCNGC	4 cut(s)	315, 371, 374, 384
HaeII	RGCGCY	2 cut(s)	563, 799
HaeIII	GGCC	1 cut(s)	129
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	3 cut(s)	165, 562, 798
Hin1I	GRCGYC	2 cut(s)	328, 560
Hin1II	CATG	3 cut(s)	283, 559, 607
Hin6I	GCGC	3 cut(s)	163, 560, 796
HinP1I	GCGC	3 cut(s)	163, 560, 796
HincII	GTYRAC	2 cut(s)	223, 601
HindII	GTYRAC	2 cut(s)	223, 601
HinfI	GANTC	2 cut(s)	21, 749
HpaI	GTTAAC	1 cut(s)	223
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	5 cut(s)	115, 154, 223, 509, 601
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	8 cut(s)	25, 181, 461, 499, 501, 735, 746, 780
Hpy8I	GTNNAC	5 cut(s)	115, 154, 223, 509, 601
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	6 cut(s)	38, 44, 260, 589, 719, 814
HpyCH4III	ACNGT	3 cut(s)	100, 535, 774
HpyCH4V	TGCA	3 cut(s)	115, 370, 742
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 171
Hsp92I	GRCGYC	2 cut(s)	328, 560
Hsp92II	CATG	3 cut(s)	283, 559, 607
HspAI	GCGC	3 cut(s)	163, 560, 796
KasI	GGCGCC	1 cut(s)	559
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	201, 542
Lsp1109I	GCAGC	3 cut(s)	301, 382, 385
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	1 cut(s)	735
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	2 cut(s)	203, 544
MboI	GATC	2 cut(s)	201, 542
MboII	GAAGA	4 cut(s)	47, 348, 356, 563
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	2 cut(s)	89, 117
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	7 cut(s)	184, 205, 250, 290, 307, 621, 812
MluNI	TGGCCA	1 cut(s)	129
Mly113I	GGCGCC	1 cut(s)	560
MlyI	GAGTC	2 cut(s)	15, 743
MmeI	TCCRAC	2 cut(s)	267, 369
MnlI	CCTC	8 cut(s)	67, 167, 176, 188, 226, 254, 257, 660
Mox20I	TGGCCA	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	3 cut(s)	222, 684, 792
MslI	CAYNNNNRTG	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	683
MspR9I	CCNGG	4 cut(s)	131, 260, 516, 660
MvaI	CCWGG	4 cut(s)	131, 260, 516, 660
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	126, 171
NarI	GGCGCC	1 cut(s)	560
NdeII	GATC	2 cut(s)	201, 542
NlaIII	CATG	3 cut(s)	283, 559, 607
NlaIV	GGNNCC	3 cut(s)	6, 544, 561
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	329
NspI	RCATGY	1 cut(s)	607
PaeR7I	CTCGAG	1 cut(s)	499
PciI	ACATGT	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	570
PflFI	GACNNNGTC	2 cut(s)	722, 752
PflMI	CCANNNNNTGG	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	4 cut(s)	316, 372, 375, 385
PleI	GAGTC	2 cut(s)	15, 743
PluTI	GGCGCC	1 cut(s)	563
PpsI	GAGTC	2 cut(s)	15, 743
PscI	ACATGT	1 cut(s)	603
Psp6I	CCWGG	4 cut(s)	129, 258, 514, 658
PspGI	CCWGG	4 cut(s)	129, 258, 514, 658
PspN4I	GGNNCC	3 cut(s)	6, 544, 561
PspPI	GGNCC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	542
PsyI	GACNNNGTC	2 cut(s)	722, 752
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	222, 684, 792
SatI	GCNGC	4 cut(s)	315, 371, 374, 384
Sau3AI	GATC	2 cut(s)	201, 542
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	2 cut(s)	15, 743
ScrFI	CCNGG	4 cut(s)	131, 260, 516, 660
SduI	GDGCHC	2 cut(s)	89, 117
SfaNI	GCATC	1 cut(s)	751
SfoI	GGCGCC	1 cut(s)	561
Sfr274I	CTCGAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	151
SlaI	CTCGAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	6 cut(s)	23, 143, 179, 459, 499, 683
SmoI	CTYRAG	6 cut(s)	23, 143, 179, 459, 499, 683
Sse9I	AATT	7 cut(s)	184, 205, 250, 290, 307, 621, 812
SsiI	CCGC	4 cut(s)	118, 172, 241, 383
SspDI	GGCGCC	1 cut(s)	559
SspMI	CTAG	1 cut(s)	735
StyD4I	CCNGG	4 cut(s)	129, 258, 514, 658
TaaI	ACNGT	3 cut(s)	100, 535, 774
TaqI	TCGA	4 cut(s)	500, 630, 756, 781
TaqII	GACCGA	1 cut(s)	482
TasI	AATT	7 cut(s)	184, 205, 250, 290, 307, 621, 812
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	386
Tru1I	TTAA	3 cut(s)	222, 684, 792
Tru9I	TTAA	3 cut(s)	222, 684, 792
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	3 cut(s)	314, 370, 373
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	3 cut(s)	268, 279, 407
TspGWI	ACGGA	4 cut(s)	54, 208, 348, 742
Tth111I	GACNNNGTC	2 cut(s)	722, 752
Van91I	CCANNNNNTGG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	683
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	3 cut(s)	290, 307, 812
XbaI	TCTAGA	1 cut(s)	734
XceI	RCATGY	1 cut(s)	607
XhoI	CTCGAG	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.