Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005428

Physical Location & Seq

Genomic Coordinates Forward (+)

18685769 .. 18687907

Gene Structure 2139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCAATTAGTGCCTAGTGATGATGATGATGATAGAAAGGAACAGATTTTATTCGACGAATCAACATCCTCAAACGAAATCGTAGCAGCGGAAAGAGGAGATCGTGTTGTGGAGGAAGGACAAGTTTCAGAAATAGCTGAGACTGATGATGACGAAACCACACTTCTTGTTTCTGGAGATCAACCACAATGTCGAATTTGCCTTGATGTTGGAGGGGAAGATCTGATTGCTCCGTGCAATTGTAAAGGTACTCAAAAGCACGTTCACAGATCTTGTCTCGATAATTGGCGCTCCACCAAGGAAGGTTTTGCATTTTCGCATTGTACAGAGTGTAGAGCCTTTTTCAAACTCCGAGCCAATGTGCCTGCTGATAGATGGTGGTTGAGATTGAGATTTCAGCTGCTGGTTGCTAGAGATCATGCCTTCATCTTCATTTCTGTCCAGATGATTGTAGCATTCTTGGGGTTACTAGTTTACAAGTTCTACGGTGAAGAACTACGAGAAATGTTTGGTTATGAGGAACATCCTTATGGGTTCTACACATTGGCTGTTTTGGCCATTGTCTTGGTAGGACTGCTATATGGATTCTTCATCGCCATAATATGTGGCCAAAAGATCAACGAGCGGCATTACCATGTTCTCGCCAAACAAGAACTCACAAAGGAATATATAGTGGAAGACCGCGACTGCAAGAATGTTCCTGAGCTTGATCAGAGTCATGTGATGGAACTAAAAATGTTGGGACTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

250

Amino Acids

28.78

Weight (kDa)

4.89

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	64 - 111	2.2e-09	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50440 AT1G50440 AT1G50440 AT1G50440 AT1G50440
fragaria_vesca	FvH4_6g37040 FvH4_6g37040 FvH4_6g37040
malus_domestica	MD09G1164700.v1.1 MD17G1163500.v1.1
prunus_persica	Prupe.3G022100_v2.0.a1 Prupe.3G022100_v2.0.a1 Prupe.3G022100_v2.0.a1
pyrus_communis	pycom09g08190 pycom17g15630
rosa_chinensis	RchiOBHm_Chr2g0149591 RchiOBHm_Chr5g0010901
rosa_laevigata	RLG00000020427
rosa_multiflora	Rmu_sc0006867.1_g000024
rosa_roxburghii	Rroxscaffold_2G00097940
rosa_rugosa	Rorug02G0412700.1 Rorug02G0412800 Rorug02G0413100
rosa_samantha	Rh2AG473200 Rh2BG485200 Rh2CG459000 Rh2DG494400 Rh6CG204700
rosa_wichuraiana	Rw2G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	625
AccII	CGCG	1 cut(s)	684
AciI	CCGC	3 cut(s)	89, 625, 682
AcoI	YGGCCR	2 cut(s)	555, 607
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	2 cut(s)	250, 325
AgsI	TTSAA	1 cut(s)	346
AhlI	ACTAGT	1 cut(s)	469
AluBI	AGCT	3 cut(s)	137, 400, 706
AluI	AGCT	3 cut(s)	137, 400, 706
Alw26I	GTCTC	2 cut(s)	134, 281
AlwNI	CAGNNNCTG	1 cut(s)	403
AoxI	GGCC	2 cut(s)	555, 607
ApeKI	GCWGC	2 cut(s)	86, 400
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	500
BalI	TGGCCA	2 cut(s)	557, 609
BbsI	GAAGAC	1 cut(s)	684
BbvI	GCAGC	2 cut(s)	98, 387
BccI	CCATC	2 cut(s)	369, 718
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	2 cut(s)	134, 281
BcuI	ACTAGT	1 cut(s)	469
BfaI	CTAG	3 cut(s)	15, 411, 470
BfoI	RGCGCY	1 cut(s)	292
BglII	AGATCT	2 cut(s)	220, 269
BisI	GCNGC	3 cut(s)	87, 401, 626
BlsI	GCNGC	3 cut(s)	88, 402, 627
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	702
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	65, 523
BseMII	CTCAG	2 cut(s)	129, 693
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	98, 387
Bsh1236I	CGCG	1 cut(s)	684
BshFI	GGCC	2 cut(s)	557, 609
BsmAI	GTCTC	2 cut(s)	134, 281
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	2 cut(s)	557, 609
Bsp1407I	TGTACA	1 cut(s)	323
Bsp143I	GATC	7 cut(s)	100, 178, 220, 269, 415, 615, 709
BspACI	CCGC	3 cut(s)	89, 625, 682
BspANI	GGCC	2 cut(s)	557, 609
BspCNI	CTCAG	2 cut(s)	130, 694
BspFNI	CGCG	1 cut(s)	684
BsrBI	CCGCTC	1 cut(s)	625
BsrGI	TGTACA	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	7 cut(s)	100, 178, 220, 269, 415, 615, 709
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	138, 702
BstF5I	GGATG	2 cut(s)	65, 523
BstFNI	CGCG	1 cut(s)	684
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	7 cut(s)	103, 181, 223, 272, 418, 618, 712
BstMAI	GTCTC	2 cut(s)	134, 281
BstMBI	GATC	7 cut(s)	100, 178, 220, 269, 415, 615, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 554
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	2 cut(s)	98, 387
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	2 cut(s)	220, 269
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	2 cut(s)	220, 269
BsuRI	GGCC	2 cut(s)	557, 609
BtgZI	GCGATG	1 cut(s)	577
BtsCI	GGATG	2 cut(s)	65, 523
Cac8I	GCNNGC	1 cut(s)	366
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	249, 324
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	3 cut(s)	419, 635, 719
CviJI	RGCY	8 cut(s)	137, 338, 356, 400, 548, 557, 609, 706
CviKI_1	RGCY	8 cut(s)	137, 338, 356, 400, 548, 557, 609, 706
CviQI	GTAC	2 cut(s)	249, 324
DdeI	CTNAG	2 cut(s)	138, 702
DpnI	GATC	7 cut(s)	102, 180, 222, 271, 417, 617, 711
DpnII	GATC	7 cut(s)	100, 178, 220, 269, 415, 615, 709
EaeI	YGGCCR	2 cut(s)	555, 607
Eco130I	CCWWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	3 cut(s)	422, 638, 722
FatI	CATG	3 cut(s)	418, 634, 718
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	87, 401, 626
FokI	GGATG	2 cut(s)	52, 510
Fsp4HI	GCNGC	3 cut(s)	87, 401, 626
FspBI	CTAG	3 cut(s)	15, 411, 470
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	3 cut(s)	87, 401, 626
GsuI	CTGGAG	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	2 cut(s)	557, 609
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	422, 638, 722
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	59, 585, 715
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	265, 475
Hpy188I	TCNGA	4 cut(s)	130, 225, 353, 714
Hpy188III	TCNNGA	4 cut(s)	174, 278, 442, 701
Hpy8I	GTNNAC	2 cut(s)	265, 475
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	110, 296, 433
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	4, 237, 311, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 554
HpyF3I	CTNAG	2 cut(s)	138, 702
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	422, 638, 722
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	7 cut(s)	100, 178, 220, 269, 415, 615, 709
LmnI	GCTCC	2 cut(s)	235, 296
LpnPI	CCDG	5 cut(s)	159, 378, 389, 455, 714
Lsp1109I	GCAGC	2 cut(s)	98, 387
MaeI	CTAG	3 cut(s)	15, 411, 470
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	7 cut(s)	102, 180, 222, 271, 417, 617, 711
MbiI	CCGCTC	1 cut(s)	625
MboI	GATC	7 cut(s)	100, 178, 220, 269, 415, 615, 709
MboII	GAAGA	5 cut(s)	230, 421, 503, 580, 689
MfeI	CAATTG	1 cut(s)	238
MflI	RGATCY	2 cut(s)	220, 269
MlsI	TGGCCA	2 cut(s)	557, 609
MluCI	AATT	4 cut(s)	5, 195, 238, 283
MluNI	TGGCCA	2 cut(s)	557, 609
MlyI	GAGTC	1 cut(s)	724
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	5 cut(s)	79, 89, 106, 206, 511
Mox20I	TGGCCA	2 cut(s)	557, 609
MscI	TGGCCA	2 cut(s)	557, 609
MslI	CAYNNNNRTG	2 cut(s)	528, 633
Msp20I	TGGCCA	2 cut(s)	557, 609
MspA1I	CMGCKG	2 cut(s)	89, 400
MunI	CAATTG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	455
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	2 cut(s)	10, 554
NdeII	GATC	7 cut(s)	100, 178, 220, 269, 415, 615, 709
NlaIII	CATG	3 cut(s)	422, 638, 722
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	59, 585
PkrI	GCNGC	3 cut(s)	88, 402, 627
PleI	GAGTC	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	723
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	2 cut(s)	220, 269
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	250, 325
RsaNI	GTAC	2 cut(s)	249, 324
RseI	CAYNNNNRTG	2 cut(s)	528, 633
SatI	GCNGC	3 cut(s)	87, 401, 626
Sau3AI	GATC	7 cut(s)	100, 178, 220, 269, 415, 615, 709
SchI	GAGTC	1 cut(s)	724
SetI	ASST	6 cut(s)	139, 250, 264, 307, 402, 708
SmiMI	CAYNNNNRTG	2 cut(s)	528, 633
SpeI	ACTAGT	1 cut(s)	469
Sse9I	AATT	4 cut(s)	5, 195, 238, 283
SsiI	CCGC	3 cut(s)	89, 625, 682
SspMI	CTAG	3 cut(s)	15, 411, 470
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	54, 193, 279
TasI	AATT	4 cut(s)	5, 195, 238, 283
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	1 cut(s)	628
TfiI	GAWTC	2 cut(s)	59, 585
TseI	GCWGC	2 cut(s)	86, 400
TspDTI	ATGAA	3 cut(s)	415, 421, 580
TspGWI	ACGGA	1 cut(s)	222
XapI	RAATTY	1 cut(s)	195
XspI	CTAG	3 cut(s)	15, 411, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.