Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005428

Physical Location & Seq

Genomic Coordinates Forward (+)

16194364 .. 16197833

Gene Structure 3470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1163500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCAATTAGTACCAAATGATAGTCATAAGGAAGATATTACAGTATGTGAACCCATCTTATGTCAGTCTGACATTTCACAGAGACCTGCAGAATCTTCATCCTCATGTGAAATTACAGCTGTGCTAGGTGATTTTCCTGCTGTTGATGAAGAGGCACAAATTTTTGACGTCAATGAAAATTCTAAGTTGGTCAACGCAGAGCAACCACAGTGTCGTATTTGCCTTGATACTGAAGAAGGGGAAGACTTAATTGCTCCATGCCATTGCAGAGGTACTCAGAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGTCAACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAATGCAGGGCAGTGTTCATATTAAGAGCGAATGTCCCTCCCGATCGCTGGTGGTTGAGATTGAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTAATTTTCATCATCGTGCAGCTGATTGTGGCATTCTTGGGAGTGATGGTATACAAATTTTATGGAGACGAACTAAGGGAGATGTTTGGTTATGAGGAGCACCCGTATGGGTTTTATACTATGGCTGTTTTAGCTATTGTTTTGGTGGGTTTGCTTTATGGCTTCTTCATAGCCATAATATGTGGACAGAGAATCAACGAACGGCATTATCATGTTCTTGCCAAACAAGAATTAACAAAGGAATATGTTGTAGAAGACCGAGAAGATAATAAGAATGCCCCCGAGCTAGACCCCAGCCATGTGACAGAACTGAGAATGTTGGGCCTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

260

Amino Acids

29.79

Weight (kDa)

5.0

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	71 - 119	9.9e-12	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50440 AT1G50440 AT1G50440 AT1G50440 AT1G50440
fragaria_vesca	FvH4_6g37040 FvH4_6g37040 FvH4_6g37040
malus_domestica	MD09G1164700.v1.1 MD17G1163500.v1.1
prunus_persica	Prupe.3G022100_v2.0.a1 Prupe.3G022100_v2.0.a1 Prupe.3G022100_v2.0.a1
pyrus_communis	pycom09g08190 pycom17g15630
rosa_chinensis	RchiOBHm_Chr2g0149591 RchiOBHm_Chr5g0010901
rosa_laevigata	RLG00000020427
rosa_multiflora	Rmu_sc0006867.1_g000024
rosa_roxburghii	Rroxscaffold_2G00097940
rosa_rugosa	Rorug02G0412700.1 Rorug02G0412800 Rorug02G0413100
rosa_samantha	Rh2AG473200 Rh2BG485200 Rh2CG459000 Rh2DG494400 Rh6CG204700
rosa_wichuraiana	Rw2G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
Acc36I	ACCTGC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	498
AcsI	RAATTY	4 cut(s)	159, 178, 416, 503
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	3 cut(s)	12, 274, 349
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	415
AluBI	AGCT	4 cut(s)	119, 469, 581, 733
AluI	AGCT	4 cut(s)	119, 469, 581, 733
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	2 cut(s)	76, 507
Ama87I	CYCGRG	1 cut(s)	728
AoxI	GGCC	1 cut(s)	769
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	4 cut(s)	159, 178, 416, 503
AseI	ATTAAT	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	769
AsuHPI	GGTGA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	728
BbsI	GAAGAC	2 cut(s)	249, 708
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	2 cut(s)	62, 487
BceAI	ACGGC	1 cut(s)	665
BcoDI	GTCTC	2 cut(s)	76, 507
BfaI	CTAG	3 cut(s)	125, 435, 734
BfmI	CTRYAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	468
BmeT110I	CYCGRG	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	769
BpiI	GAAGAC	2 cut(s)	249, 708
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	76
BsaXI	ACNNNNNCTCC	4 cut(s)	480, 510, 536, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	290, 749
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	478
BseYI	CCCAGC	1 cut(s)	740
BsgI	GTGCAG	1 cut(s)	485
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	771
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	728
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	76, 507
BsmBI	CGTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	3 cut(s)	359, 479, 727
BsnI	GGCC	1 cut(s)	771
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	728
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp1407I	TGTACA	1 cut(s)	347
Bsp143I	GATC	3 cut(s)	293, 394, 439
BspANI	GGCC	1 cut(s)	771
BspCNI	CTCAG	2 cut(s)	289, 750
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	262
BsrGI	TGTACA	1 cut(s)	347
BssMI	GATC	3 cut(s)	293, 394, 439
BssNAI	GTATAC	1 cut(s)	499
BssNI	GRCGYC	1 cut(s)	168
Bst1107I	GTATAC	1 cut(s)	499
Bst4CI	ACNGT	2 cut(s)	43, 210
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	347
BstDEI	CTNAG	4 cut(s)	183, 276, 521, 758
BstF5I	GGATG	1 cut(s)	98
BstKTI	GATC	3 cut(s)	296, 397, 442
BstMAI	GTCTC	2 cut(s)	76, 507
BstMBI	GATC	3 cut(s)	293, 394, 439
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	2 cut(s)	249, 708
BstZ17I	GTATAC	1 cut(s)	499
BsuRI	GGCC	1 cut(s)	771
BtsCI	GGATG	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	215, 369
BveI	ACCTGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	769
Csp6I	GTAC	3 cut(s)	11, 273, 348
CviAII	CATG	6 cut(s)	105, 258, 297, 443, 659, 746
CviQI	GTAC	3 cut(s)	11, 273, 348
DdeI	CTNAG	4 cut(s)	183, 276, 521, 758
DpnI	GATC	3 cut(s)	295, 396, 441
DpnII	GATC	3 cut(s)	293, 394, 439
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	728
EcoT22I	ATGCAT	1 cut(s)	448
Esp3I	CGTCTC	1 cut(s)	507
FaeI	CATG	6 cut(s)	108, 261, 300, 446, 662, 749
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	6 cut(s)	104, 257, 296, 442, 658, 745
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	467
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	467
FspBI	CTAG	3 cut(s)	125, 435, 734
GluI	GCNGC	1 cut(s)	467
GsaI	CCCAGC	1 cut(s)	744
HaeIII	GGCC	1 cut(s)	771
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	108, 261, 300, 446, 662, 749
HincII	GTYRAC	2 cut(s)	193, 318
HindII	GTYRAC	2 cut(s)	193, 318
HinfI	GANTC	2 cut(s)	92, 639
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	5 cut(s)	50, 193, 318, 499, 632
Hpy188I	TCNGA	2 cut(s)	70, 279
Hpy188III	TCNNGA	2 cut(s)	302, 392
Hpy8I	GTNNAC	5 cut(s)	50, 193, 318, 499, 632
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	43, 210
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	4, 89, 267, 357, 446, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	4 cut(s)	183, 276, 521, 758
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	108, 261, 300, 446, 662, 749
Kzo9I	GATC	3 cut(s)	293, 394, 439
LmnI	GCTCC	2 cut(s)	259, 544
LpnPI	CCDG	5 cut(s)	99, 150, 343, 385, 754
Lsp1109I	GCAGC	1 cut(s)	478
MaeI	CTAG	3 cut(s)	125, 435, 734
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	3 cut(s)	295, 396, 441
MboI	GATC	3 cut(s)	293, 394, 439
MboII	GAAGA	8 cut(s)	44, 87, 161, 245, 254, 604, 713, 722
MhlI	GDGCHC	1 cut(s)	549
MnlI	CCTC	7 cut(s)	112, 145, 263, 306, 319, 399, 535
Mph1103I	ATGCAT	1 cut(s)	448
MseI	TTAA	4 cut(s)	248, 374, 449, 680
MslI	CAYNNNNRTG	4 cut(s)	103, 461, 552, 657
MspA1I	CMGCKG	2 cut(s)	119, 469
Mva1269I	GAATGC	3 cut(s)	359, 479, 727
MwoI	GCNNNNNNNGC	1 cut(s)	578
NdeII	GATC	3 cut(s)	293, 394, 439
NlaIII	CATG	6 cut(s)	108, 261, 300, 446, 662, 749
NmuCI	GTSAC	1 cut(s)	748
NsiI	ATGCAT	1 cut(s)	448
PctI	GAATGC	3 cut(s)	359, 479, 727
PfeI	GAWTC	2 cut(s)	92, 639
PkrI	GCNGC	1 cut(s)	468
Ple19I	CGATCG	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	740
PspPI	GGNCC	1 cut(s)	769
PstI	CTGCAG	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	397
PvuII	CAGCTG	2 cut(s)	119, 469
RsaI	GTAC	3 cut(s)	12, 274, 349
RsaNI	GTAC	3 cut(s)	11, 273, 348
RseI	CAYNNNNRTG	4 cut(s)	103, 461, 552, 657
SaqAI	TTAA	4 cut(s)	248, 374, 449, 680
SatI	GCNGC	1 cut(s)	467
Sau3AI	GATC	3 cut(s)	293, 394, 439
Sau96I	GGNCC	1 cut(s)	769
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	9 cut(s)	88, 121, 130, 171, 274, 317, 471, 583, 735
SfcI	CTRYAG	1 cut(s)	87
SmiMI	CAYNNNNRTG	4 cut(s)	103, 461, 552, 657
SspMI	CTAG	3 cut(s)	125, 435, 734
TaaI	ACNGT	2 cut(s)	43, 210
TaiI	ACGT	1 cut(s)	171
TaqII	GACCGA	1 cut(s)	720
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	92, 639
Tru1I	TTAA	4 cut(s)	248, 374, 449, 680
Tru9I	TTAA	4 cut(s)	248, 374, 449, 680
TscAI	CASTG	2 cut(s)	215, 369
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	6 cut(s)	87, 162, 189, 358, 445, 604
TspRI	CASTG	2 cut(s)	215, 369
VspI	ATTAAT	1 cut(s)	449
XapI	RAATTY	4 cut(s)	159, 178, 416, 503
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	3 cut(s)	125, 435, 734
ZraI	GACGTC	1 cut(s)	169
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.