Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005428

Physical Location & Seq

Genomic Coordinates Forward (+)

71457258 .. 71460473

Gene Structure 3216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG494400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCAATTAGTATTAAATGATGGTCGTGAGGAAGATAATTCGGAGTGTGAGCCCATCTTAAGTCAGTCTGAAAATGCACAAAGATCATCCGAAGCTTCGTCCTCGTGTGAAATTACAGCTGTGCTAGGTGACATTGCTGTTACTGATGAAGAGTCGCAAAATCTAGATGTCAACGAGAGTTCTAAGTTGGTGATTTCAGAGCAACCACAATGCCGTATTTGTCTTGATAATGAAGGAGAAGACCTGATTGCTCCATGCCATTGCAGAGGTACCCAGAAATATGTTCATAGATCATGTCTTGATAACTGGAGGTCCACAAAGGAGGGCTTCGCTTTTGCTCATTGTACAGAATGCAGGGAAGTATTCATATTACGAGCTAATGTACCTCCGGATCGCTGGTGGTTGAGACTAAAATTTCAGTTTCTTGTTGCTAGAGACCATGCATTCATTTTTATTATCGTTCAACTGATTGTGGCATTCTTGGGAGTGATGGTATACAAGTTTTATGGAGAGGAACTACGGGAAATGTTTGGTTATGAAGAACACCCATATGGGTTTTATACTATGGCTGTCTTAGCTATTGTTTTGGTGGGTTTGCTCTATGGTTTCTTCATAGCCATAATATGTGGACAAAGAATCAATGAACGTCATTATCATGTTCTTGCCAAACAAGAATTAACAAAGGAATATGTTGTAGAGGACCGAGAAGATAATAAAAATCCCCCTGAGCTAGACCCCAACCATGTGACAGAGCTGAGAATGTTGGGCCTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

258

Amino Acids

29.77

Weight (kDa)

4.86

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	71 - 118	4.9e-11	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0005428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50440 AT1G50440 AT1G50440 AT1G50440 AT1G50440
fragaria_vesca	FvH4_6g37040 FvH4_6g37040 FvH4_6g37040
malus_domestica	MD09G1164700.v1.1 MD17G1163500.v1.1
prunus_persica	Prupe.3G022100_v2.0.a1 Prupe.3G022100_v2.0.a1 Prupe.3G022100_v2.0.a1
pyrus_communis	pycom09g08190 pycom17g15630
rosa_chinensis	RchiOBHm_Chr2g0149591 RchiOBHm_Chr5g0010901
rosa_laevigata	RLG00000020427
rosa_multiflora	Rmu_sc0006867.1_g000024
rosa_roxburghii	Rroxscaffold_2G00097940
rosa_rugosa	Rorug02G0412700.1 Rorug02G0412800 Rorug02G0413100
rosa_samantha	Rh2AG473200 Rh2BG485200 Rh2CG459000 Rh2DG494400 Rh6CG204700
rosa_wichuraiana	Rw2G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	388
AclWI	GGATC	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	413
AfaI	GTAC	3 cut(s)	271, 346, 384
AflII	CTTAAG	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	464
AluBI	AGCT	6 cut(s)	95, 119, 377, 578, 730, 754
AluI	AGCT	6 cut(s)	95, 119, 377, 578, 730, 754
Alw26I	GTCTC	2 cut(s)	400, 429
AlwI	GGATC	1 cut(s)	399
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	1 cut(s)	766
ApoI	RAATTY	1 cut(s)	413
Asp718I	GGTACC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	312, 700, 766
AsuHPI	GGTGA	2 cut(s)	140, 202
AvaII	GGWCC	2 cut(s)	312, 700
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	246
BccI	CCATC	3 cut(s)	14, 62, 484
BceAI	ACGGC	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	400, 429
BfaI	CTAG	4 cut(s)	125, 164, 432, 731
BfrI	CTTAAG	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	312, 700
BmgT120I	GGNCC	3 cut(s)	312, 700, 766
BmiI	GGNNCC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	328
Bpu10I	CCTNAGC	1 cut(s)	726
BsaI	GGTCTC	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	2 cut(s)	132, 259
BseAI	TCCGGA	1 cut(s)	388
BseGI	GGATG	1 cut(s)	86
BseMI	GCAATG	2 cut(s)	132, 259
BseMII	CTCAG	2 cut(s)	717, 746
BseNI	ACTGG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	768
BshNI	GGYRCC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	400, 429
BsmI	GAATGC	3 cut(s)	356, 443, 476
BsnI	GGCC	1 cut(s)	768
Bso31I	GGTCTC	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp13I	TCCGGA	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	83, 290, 391
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	2 cut(s)	718, 747
BspEI	TCCGGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	269
BspTI	CTTAAG	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	2 cut(s)	132, 259
BsrGI	TGTACA	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	311
BssMI	GATC	3 cut(s)	83, 290, 391
BssNAI	GTATAC	1 cut(s)	496
BssSI	CACGAG	1 cut(s)	103
Bst1107I	GTATAC	1 cut(s)	496
Bst2BI	CACGAG	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	58
BstAUI	TGTACA	1 cut(s)	344
BstDEI	CTNAG	4 cut(s)	183, 574, 726, 755
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	3 cut(s)	86, 293, 394
BstMAI	GTCTC	2 cut(s)	400, 429
BstMBI	GATC	3 cut(s)	83, 290, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstV2I	GAAGAC	1 cut(s)	246
BstZ17I	GTATAC	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	768
BtsCI	GGATG	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	312, 700, 766
Csp6I	GTAC	3 cut(s)	270, 345, 383
CviAII	CATG	5 cut(s)	255, 294, 440, 656, 743
CviQI	GTAC	3 cut(s)	270, 345, 383
DdeI	CTNAG	4 cut(s)	183, 574, 726, 755
DpnI	GATC	3 cut(s)	85, 292, 393
DpnII	GATC	3 cut(s)	83, 290, 391
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	312, 700
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	5 cut(s)	258, 297, 443, 659, 746
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	5 cut(s)	254, 293, 439, 655, 742
FauNDI	CATATG	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	495
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	54
FspBI	CTAG	4 cut(s)	125, 164, 432, 731
GsuI	CTGGAG	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	768
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	5 cut(s)	258, 297, 443, 659, 746
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	2 cut(s)	152, 636
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	2 cut(s)	140, 202
Hpy166II	GTNNAC	4 cut(s)	172, 315, 496, 629
Hpy188I	TCNGA	4 cut(s)	43, 70, 91, 199
Hpy188III	TCNNGA	5 cut(s)	26, 164, 224, 299, 389
Hpy8I	GTNNAC	4 cut(s)	172, 315, 496, 629
HpyAV	CCTTC	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	646
HpyCH4V	TGCA	5 cut(s)	4, 77, 264, 354, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	4 cut(s)	183, 574, 726, 755
HpySE526I	ACGT	1 cut(s)	646
Hsp92II	CATG	5 cut(s)	258, 297, 443, 659, 746
Kpn2I	TCCGGA	1 cut(s)	388
KpnI	GGTACC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	83, 290, 391
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	7 cut(s)	257, 287, 292, 340, 382, 402, 738
MaeI	CTAG	4 cut(s)	125, 164, 432, 731
MaeII	ACGT	1 cut(s)	646
MaeIII	GTNAC	3 cut(s)	128, 139, 745
MalI	GATC	3 cut(s)	85, 292, 393
MboI	GATC	3 cut(s)	83, 290, 391
MboII	GAAGA	6 cut(s)	44, 161, 251, 551, 601, 719
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	5 cut(s)	5, 37, 111, 413, 674
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	8 cut(s)	22, 112, 260, 303, 316, 396, 505, 691
Mph1103I	ATGCAT	1 cut(s)	445
MroI	TCCGGA	1 cut(s)	388
MseI	TTAA	3 cut(s)	14, 59, 677
MslI	CAYNNNNRTG	2 cut(s)	549, 654
MspA1I	CMGCKG	1 cut(s)	119
MspCI	CTTAAG	1 cut(s)	58
MspI	CCGG	1 cut(s)	389
Mva1269I	GAATGC	3 cut(s)	356, 443, 476
MwoI	GCNNNNNNNGC	1 cut(s)	575
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	3 cut(s)	83, 290, 391
NlaIII	CATG	5 cut(s)	258, 297, 443, 659, 746
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	128, 745
NsiI	ATGCAT	1 cut(s)	445
PctI	GAATGC	3 cut(s)	356, 443, 476
PfeI	GAWTC	1 cut(s)	636
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	3 cut(s)	312, 700, 766
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	3 cut(s)	271, 346, 384
RsaNI	GTAC	3 cut(s)	270, 345, 383
RseI	CAYNNNNRTG	2 cut(s)	549, 654
SaqAI	TTAA	3 cut(s)	14, 59, 677
Sau3AI	GATC	3 cut(s)	83, 290, 391
Sau96I	GGNCC	3 cut(s)	312, 700, 766
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	54
SinI	GGWCC	2 cut(s)	312, 700
SmiMI	CAYNNNNRTG	2 cut(s)	549, 654
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	5 cut(s)	5, 37, 111, 413, 674
SspMI	CTAG	4 cut(s)	125, 164, 432, 731
TaiI	ACGT	1 cut(s)	649
TaqII	GACCGA	1 cut(s)	717
TasI	AATT	5 cut(s)	5, 37, 111, 413, 674
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	1 cut(s)	636
Tru1I	TTAA	3 cut(s)	14, 59, 677
Tru9I	TTAA	3 cut(s)	14, 59, 677
TseFI	GTSAC	2 cut(s)	128, 745
Tsp45I	GTSAC	2 cut(s)	128, 745
TspDTI	ATGAA	8 cut(s)	162, 246, 275, 355, 436, 552, 601, 657
Vha464I	CTTAAG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	312, 700
XapI	RAATTY	1 cut(s)	413
XbaI	TCTAGA	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	4 cut(s)	125, 164, 432, 731
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.