Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005428

Physical Location & Seq

Genomic Coordinates Reverse (-)

52886721 .. 52887107

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0413100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTGCGTGCTCATTACTTCCTTGCACTCCTCGCCGTCCTCTTTCCTCTCCTCGTGGCAGGAACAGAGCAAAATGGTGCCACTTTTCTGATTGGTCCTGGTAATGGATGGAAGCCTGTAGAGGACATCAGCGCCCCTCTTATTATAGATATTGCAAAGTTTGCAGTTTCCAAGTACGACCTTAGTAACAAGAAGGACTTGGTCTTTCAGAATGTTACTAAAGGCGCCTACAAGGAGGTCCTAACAGGAACCCAGTATCGGCTCGTCGTTACTGTTAGAGATAATTACTCAACTCTCAACCAGAGCCCAGTTTATGTGGCTAATGTCGTCCATACACGTCGGAGTGCGGTTAACAAATTGCTCTCTTTTGAACAAATTTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

128

Amino Acids

14.19

Weight (kDa)

9.43

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	41 - 125	9.6e-15	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50440 AT1G50440 AT1G50440 AT1G50440 AT1G50440
fragaria_vesca	FvH4_6g37040 FvH4_6g37040 FvH4_6g37040
malus_domestica	MD09G1164700.v1.1 MD17G1163500.v1.1
prunus_persica	Prupe.3G022100_v2.0.a1 Prupe.3G022100_v2.0.a1 Prupe.3G022100_v2.0.a1
pyrus_communis	pycom09g08190 pycom17g15630
rosa_chinensis	RchiOBHm_Chr2g0149591 RchiOBHm_Chr5g0010901
rosa_laevigata	RLG00000020427
rosa_multiflora	Rmu_sc0006867.1_g000024
rosa_roxburghii	Rroxscaffold_2G00097940
rosa_rugosa	Rorug02G0412700.1 Rorug02G0412800 Rorug02G0413100
rosa_samantha	Rh2AG473200 Rh2BG485200 Rh2CG459000 Rh2DG494400 Rh6CG204700
rosa_wichuraiana	Rw2G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	77, 224
AciI	CCGC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	104, 258
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	371, 381
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	97
Alw21I	GWGCWC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	375
AspLEI	GCGC	2 cut(s)	134, 227
AspS9I	GGNCC	2 cut(s)	95, 238
AvaII	GGWCC	2 cut(s)	95, 238
BanI	GGYRCC	2 cut(s)	77, 224
BanII	GRGCYC	1 cut(s)	308
BauI	CACGAG	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	2 cut(s)	135, 228
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	2 cut(s)	95, 238
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	95, 238
BmiI	GGNNCC	3 cut(s)	79, 226, 250
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	2 cut(s)	247, 302
BmuI	ACTGGG	2 cut(s)	247, 302
BsaHI	GRCGYC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 258
Bse1I	ACTGG	2 cut(s)	253, 308
BseBI	CCWGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	2 cut(s)	104, 258
BseNI	ACTGG	2 cut(s)	253, 308
BseRI	GAGGAG	2 cut(s)	20, 41
BshNI	GGYRCC	2 cut(s)	77, 224
BsiHKAI	GWGCWC	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	104, 258
Bsp1286I	GDGCHC	2 cut(s)	13, 308
BspACI	CCGC	1 cut(s)	347
BspLI	GGNNCC	3 cut(s)	79, 226, 250
BspT107I	GGYRCC	2 cut(s)	77, 224
BsrI	ACTGG	2 cut(s)	253, 308
BssNI	GRCGYC	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	113
BstH2I	RGCGCY	2 cut(s)	135, 228
BstHHI	GCGC	2 cut(s)	134, 227
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 161
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	2 cut(s)	134, 227
Cfr13I	GGNCC	2 cut(s)	95, 238
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	4 cut(s)	115, 262, 306, 320
CviKI_1	RGCY	4 cut(s)	115, 262, 306, 320
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	182
DinI	GGCGCC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	308
Eco47I	GGWCC	2 cut(s)	95, 238
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	308
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
FaiI	YATR	3 cut(s)	146, 315, 333
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	2 cut(s)	133, 226
GluI	GCNGC	1 cut(s)	5
HaeII	RGCGCY	2 cut(s)	135, 228
HhaI	GCGC	2 cut(s)	134, 227
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	2 cut(s)	132, 225
HinP1I	GCGC	2 cut(s)	132, 225
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HpaI	GTTAAC	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	3 cut(s)	90, 210, 342
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	2 cut(s)	269, 342
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	3 cut(s)	26, 155, 164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 161
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	337
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	2 cut(s)	132, 225
KasI	GGCGCC	1 cut(s)	224
KspAI	GTTAAC	1 cut(s)	352
LpnPI	CCDG	8 cut(s)	45, 84, 111, 129, 231, 266, 314, 321
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	3 cut(s)	185, 214, 268
MhlI	GDGCHC	2 cut(s)	13, 308
MluCI	AATT	3 cut(s)	283, 356, 375
Mly113I	GGCGCC	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	7 cut(s)	41, 50, 57, 62, 115, 147, 229
MseI	TTAA	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	32, 161
NarI	GGCGCC	1 cut(s)	225
NlaIV	GGNNCC	3 cut(s)	79, 226, 250
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	6
PluTI	GGCGCC	1 cut(s)	228
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	79, 226, 250
PspPI	GGNCC	2 cut(s)	95, 238
PspPPI	RGGWCCY	1 cut(s)	238
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	5
Sau96I	GGNCC	2 cut(s)	95, 238
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	13, 308
SetI	ASST	3 cut(s)	183, 240, 340
SfcI	CTRYAG	1 cut(s)	117
SfoI	GGCGCC	1 cut(s)	226
SinI	GGWCC	2 cut(s)	95, 238
Sse9I	AATT	3 cut(s)	283, 356, 375
SsiI	CCGC	1 cut(s)	347
SspDI	GGCGCC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	340
TasI	AATT	3 cut(s)	283, 356, 375
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseI	GCWGC	1 cut(s)	4
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	95, 238
XapI	RAATTY	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.