Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014409

Physical Location & Seq

Genomic Coordinates Reverse (-)

19186488 .. 19188805

Gene Structure 2318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGACGGAGTATAAGCAGGAGCAGGAAATGGAGATTGAAGCTCTTGAAGCTATACTTATGGATGAGTTTAAAGAAATTCATTCTAGTGAAAGTGGGCTTAATACTTCGAATCGATGCTTTCAGATTACAGTGACTCCTCAGGATGATGAACTGGAGGAATTAGCAATCCCACCAGTTCAGCTGGCTTTGGTTTTCTCGCACACAGAAAATTACCCGGACGAGGCTCCGCTTTTGGATGTTAAAAGTATTCGAGGAATCCATGTTAGTGACCTCACCATCTTGAAAGAGAAGCTTGAACAAGAGGCATCTGAAAATCTAGGTATGGCCATGATCTATACACTGGTCTCATCAGCAAAGGACTGGTTGTCTGAACACTATGGGCAAGATGATGCAGCTGAATTTGCCGAAGTAGAAGCTGCCAAAGAGGATGAGGTAATTGTCCCTCATGGAGAACCTGTTACGCTAGAGACATTTTTGGCGTGGAGAGAGAGATATGAGGCAGAGCTTGCACTTGAGCGAGCCAAGTTGATGCCGGAGTCTGCTCTTACAGCACCTAAGGAGAAGAAGCTTACAGGAAGACAGTGGTTCGAAAGTGGGAGAGGGAGAGGAACGGTGGTCATTGCTGATGAGGAAGATGAGGAGGAAGATGAGGAAGACATCGACTTTGAAGACGAAGACTTTGAAGATGACGAAGAAGACATGCTTGAGCACTATTTGGCGGAGAAATCTGATTCTTCCGCTCCCCCAACAAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010469 GO:0010556 GO:0010646 GO:0010647 GO:0014070 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032991 GO:0033143 GO:0033145 GO:0033554 GO:0033574 GO:0033993 GO:0034599 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043401 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060765 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071383 GO:0071394 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0080090 GO:1901564 GO:1901566 GO:1901576 GO:1901654 GO:1901655 GO:1901700 GO:1901701 GO:1903506 GO:1990904 GO:2000112 GO:2000273 GO:2000823 GO:2000825 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

252

Amino Acids

28.71

Weight (kDa)

4.14

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWD	PF05773	6 - 122	1.7e-25	RWD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51730
fragaria_vesca	FvH4_6g32940
malus_domestica	MD09G1196300.v1.1 MD17G1177100.v1.1
prunus_persica	Prupe.3G052700_v2.0.a1
pyrus_communis	pycom09g11340 pycom17g18600
rosa_chinensis	RchiOBHm_Chr2g0142451
rosa_multiflora	Rmu_sc0001211.1_g000015 Rmu_sc0005700.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102590
rosa_rugosa	Rorug02G0372900
rosa_samantha	Rh2AG424500 Rh2BG434200 Rh2CG411100 Rh2DG444200
rosa_wichuraiana	Rw2G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	740
AciI	CCGC	3 cut(s)	227, 719, 738
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	75, 398
AfiI	CCNNNNNNNGG	2 cut(s)	220, 750
AgsI	TTSAA	6 cut(s)	38, 47, 283, 296, 668, 683
AhdI	GACNNNNNGTC	1 cut(s)	364
AluBI	AGCT	8 cut(s)	41, 50, 181, 292, 395, 416, 505, 568
AluI	AGCT	8 cut(s)	41, 50, 181, 292, 395, 416, 505, 568
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	2 cut(s)	349, 461
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	392, 416
ApoI	RAATTY	2 cut(s)	75, 398
ArsI	GACNNNNNNTTYG	4 cut(s)	647, 662, 679, 694
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	265
AsuII	TTCGAA	2 cut(s)	107, 588
AxyI	CCTNAGG	2 cut(s)	138, 555
BalI	TGGCCA	1 cut(s)	326
BbsI	GAAGAC	5 cut(s)	583, 660, 675, 681, 702
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	2 cut(s)	403, 404
BccI	CCATC	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	349, 461
BfaI	CTAG	3 cut(s)	84, 317, 464
BisI	GCNGC	2 cut(s)	393, 417
BlsI	GCNGC	2 cut(s)	394, 418
Bme1390I	CCNGG	1 cut(s)	215
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	4 cut(s)	104, 314, 379, 519
BpiI	GAAGAC	5 cut(s)	583, 660, 675, 681, 702
BpmI	CTGGAG	1 cut(s)	173
Bpu14I	TTCGAA	2 cut(s)	107, 588
BpuEI	CTTGAG	2 cut(s)	533, 725
BpuMI	CCSGG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	349
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 441, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 750
Bse1I	ACTGG	4 cut(s)	156, 173, 345, 365
Bse21I	CCTNAGG	2 cut(s)	138, 555
Bse3DI	GCAATG	1 cut(s)	618
BseCI	ATCGAT	1 cut(s)	112
BseGI	GGATG	4 cut(s)	67, 148, 241, 433
BseLI	CCNNNNNNNGG	2 cut(s)	220, 750
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	4 cut(s)	156, 173, 345, 365
BseRI	GAGGAG	2 cut(s)	126, 653
BseXI	GCAGC	2 cut(s)	403, 404
BshFI	GGCC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	2 cut(s)	215, 533
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	220, 750
BsmAI	GTCTC	2 cut(s)	349, 461
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	349
Bsp119I	TTCGAA	2 cut(s)	107, 588
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	3 cut(s)	227, 719, 738
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	151
BspDI	ATCGAT	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	225
BspT104I	TTCGAA	2 cut(s)	107, 588
BspTNI	GGTCTC	1 cut(s)	349
BsrBI	CCGCTC	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	618
BsrI	ACTGG	4 cut(s)	156, 173, 345, 365
BssMI	GATC	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	130, 582, 613
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstBI	TTCGAA	2 cut(s)	107, 588
BstC8I	GCNNGC	3 cut(s)	183, 507, 519
BstDEI	CTNAG	2 cut(s)	138, 555
BstF5I	GGATG	4 cut(s)	67, 148, 241, 433
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	2 cut(s)	349, 461
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 401, 506, 548
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	403, 404
BstV2I	GAAGAC	5 cut(s)	583, 660, 675, 681, 702
Bsu15I	ATCGAT	1 cut(s)	112
Bsu36I	CCTNAGG	2 cut(s)	138, 555
BsuRI	GGCC	1 cut(s)	326
BsuTUI	ATCGAT	1 cut(s)	112
BtsCI	GGATG	4 cut(s)	67, 148, 241, 433
BtsIMutI	CAGTG	3 cut(s)	135, 338, 587
Cac8I	GCNNGC	3 cut(s)	183, 507, 519
ClaI	ATCGAT	1 cut(s)	112
CviAII	CATG	5 cut(s)	260, 328, 446, 700, 756
DdeI	CTNAG	2 cut(s)	138, 555
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
DraI	TTTAAA	1 cut(s)	70
DriI	GACNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	324
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	734
Eco31I	GGTCTC	1 cut(s)	349
Eco81I	CCTNAGG	2 cut(s)	138, 555
FaeI	CATG	5 cut(s)	263, 331, 449, 703, 759
FalI	AAGNNNNNCTT	6 cut(s)	39, 71, 276, 308, 687, 719
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	5 cut(s)	259, 327, 445, 699, 755
Fnu4HI	GCNGC	2 cut(s)	393, 417
FokI	GGATG	4 cut(s)	74, 155, 248, 440
Fsp4HI	GCNGC	2 cut(s)	393, 417
FspBI	CTAG	3 cut(s)	84, 317, 464
GluI	GCNGC	2 cut(s)	393, 417
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	2 cut(s)	215, 533
Hin1II	CATG	5 cut(s)	263, 331, 449, 703, 759
HindIII	AAGCTT	2 cut(s)	290, 566
HinfI	GANTC	5 cut(s)	109, 133, 255, 536, 731
HpaII	CCGG	2 cut(s)	215, 533
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	123, 310, 370, 730
Hpy188III	TCNNGA	3 cut(s)	44, 140, 280
HpyCH4III	ACNGT	3 cut(s)	130, 582, 613
HpyCH4V	TGCA	2 cut(s)	392, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 401, 506, 548
HpyF3I	CTNAG	2 cut(s)	138, 555
Hsp92II	CATG	5 cut(s)	263, 331, 449, 703, 759
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	3 cut(s)	19, 229, 745
Lsp1109I	GCAGC	2 cut(s)	403, 404
LweI	GCATC	4 cut(s)	104, 314, 379, 519
MaeI	CTAG	3 cut(s)	84, 317, 464
MaeIII	GTNAC	3 cut(s)	130, 266, 457
MalI	GATC	1 cut(s)	332
MbiI	CCGCTC	1 cut(s)	740
MboI	GATC	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	711
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	5 cut(s)	75, 158, 208, 398, 435
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	127, 545
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	3 cut(s)	69, 99, 240
MslI	CAYNNNNRTG	2 cut(s)	84, 264
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	181, 395
MspI	CCGG	2 cut(s)	215, 533
MspR9I	CCNGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	47, 401, 506, 548
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	5 cut(s)	263, 331, 449, 703, 759
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	130, 266
NspI	RCATGY	1 cut(s)	703
NspV	TTCGAA	2 cut(s)	107, 588
PfeI	GAWTC	3 cut(s)	109, 255, 731
PkrI	GCNGC	2 cut(s)	394, 418
PleI	GAGTC	2 cut(s)	127, 544
PpsI	GAGTC	2 cut(s)	127, 544
PspN4I	GGNNCC	1 cut(s)	225
PvuII	CAGCTG	2 cut(s)	181, 395
RseI	CAYNNNNRTG	2 cut(s)	84, 264
SaqAI	TTAA	3 cut(s)	69, 99, 240
SatI	GCNGC	2 cut(s)	393, 417
Sau3AI	GATC	1 cut(s)	330
SchI	GAGTC	2 cut(s)	127, 545
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	4 cut(s)	104, 314, 379, 519
SfuI	TTCGAA	2 cut(s)	107, 588
SmiMI	CAYNNNNRTG	2 cut(s)	84, 264
SmlI	CTYRAG	2 cut(s)	512, 704
SmoI	CTYRAG	2 cut(s)	512, 704
Sse9I	AATT	5 cut(s)	75, 158, 208, 398, 435
SsiI	CCGC	3 cut(s)	227, 719, 738
SspMI	CTAG	3 cut(s)	84, 317, 464
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	3 cut(s)	130, 582, 613
TaqI	TCGA	5 cut(s)	107, 112, 250, 588, 660
TasI	AATT	5 cut(s)	75, 158, 208, 398, 435
TfiI	GAWTC	3 cut(s)	109, 255, 731
Tru1I	TTAA	3 cut(s)	69, 99, 240
Tru9I	TTAA	3 cut(s)	69, 99, 240
TscAI	CASTG	3 cut(s)	135, 345, 587
TseFI	GTSAC	2 cut(s)	130, 266
TseI	GCWGC	2 cut(s)	392, 416
Tsp45I	GTSAC	2 cut(s)	130, 266
TspDTI	ATGAA	2 cut(s)	68, 162
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	3 cut(s)	135, 345, 587
XapI	RAATTY	2 cut(s)	75, 398
XceI	RCATGY	1 cut(s)	703
XspI	CTAG	3 cut(s)	84, 317, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.