Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014409

Physical Location & Seq

Genomic Coordinates Forward (+)

56106395 .. 56111761

Gene Structure 5367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG411100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACGGATTATGAACAAGAGCAGGAGATGGAAATTGAGGCATTGGAAGCAATACTCATGGATGATTTCAAAGAAATTCACTCGGGTGAGAGTGGGTTAAACGCTACCAAGAGGTGTTTTCAGATAACACTGTCTCCGCTGGATGATGAGGCAGATGAGTTAACTACGGCTCCAGTTCAGCTGGGTTTGATTTTCTCACACACAGAAAAATATCCAGATGAGCCTCCACTCTTGAACGTGAGAAGTTTACGAGGTATACAAGGAGAACATCTCAGAATTTTGAGAGAAAAGCTTCAGCAAGAGGCATCTGAAAATCTTGGTATGGCTATGATCTATACGCTAGTTACATCAGCTAAAGAATGGCTTTCTGAGCAATATGGTCAAGACACTAGTATTGAGGATGCTATAGCAGAAGAAGCAGCAAAGGATGATATAATTGTACCACATGGAGAGCCAGTTACTGTTGAAACTTTTCTGGCATGGAGAGAGATGTTTGAAGCAGAGTTGGCACTTGAACGAGCCAAGTTAATGCCCGAGTCTGCACTTTCAGCTCCCAAGGAAAAGAGGCTCACAGGCAGACAGTGGTTTGAATCTGGAAGAAATGCAGCGGTATTTGTTTACTTTGCATACATTTGGTCTCGTACTATACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010469 GO:0010556 GO:0010646 GO:0010647 GO:0014070 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032991 GO:0033143 GO:0033145 GO:0033554 GO:0033574 GO:0033993 GO:0034599 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043401 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060765 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071383 GO:0071394 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0080090 GO:1901564 GO:1901566 GO:1901576 GO:1901654 GO:1901655 GO:1901700 GO:1901701 GO:1903506 GO:1990904 GO:2000112 GO:2000273 GO:2000823 GO:2000825 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

217

Amino Acids

24.73

Weight (kDa)

4.5

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWD	PF05773	6 - 122	2.3e-25	RWD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Orthologous Genes (Group: OG0014409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51730
fragaria_vesca	FvH4_6g32940
malus_domestica	MD09G1196300.v1.1 MD17G1177100.v1.1
prunus_persica	Prupe.3G052700_v2.0.a1
pyrus_communis	pycom09g11340 pycom17g18600
rosa_chinensis	RchiOBHm_Chr2g0142451
rosa_multiflora	Rmu_sc0001211.1_g000015 Rmu_sc0005700.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102590
rosa_rugosa	Rorug02G0372900
rosa_samantha	Rh2AG424500 Rh2BG434200 Rh2CG411100 Rh2DG444200
rosa_wichuraiana	Rw2G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	256
AciI	CCGC	2 cut(s)	137, 608
AcsI	RAATTY	2 cut(s)	75, 276
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	2 cut(s)	441, 643
AgsI	TTSAA	6 cut(s)	70, 235, 467, 497, 515, 590
AhlI	ACTAGT	1 cut(s)	389
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	4 cut(s)	181, 292, 353, 551
AluI	AGCT	4 cut(s)	181, 292, 353, 551
Alw26I	GTCTC	2 cut(s)	138, 642
AlwNI	CAGNNNCTG	1 cut(s)	461
Ama87I	CYCGRG	2 cut(s)	82, 533
ApeKI	GCWGC	2 cut(s)	419, 605
ApoI	RAATTY	2 cut(s)	75, 276
Asp700I	GAANNNNTTC	2 cut(s)	291, 471
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	2 cut(s)	82, 533
BbvI	GCAGC	2 cut(s)	431, 617
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	138, 642
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	2 cut(s)	341, 390
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	2 cut(s)	420, 606
BlsI	GCNGC	2 cut(s)	421, 607
BmeT110I	CYCGRG	2 cut(s)	82, 533
BmiI	GGNNCC	1 cut(s)	171
BmsI	GCATC	2 cut(s)	314, 391
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
BpmI	CTGGAG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	555
BsaXI	ACNNNNNCTCC	6 cut(s)	118, 148, 154, 184, 441, 471
Bse1I	ACTGG	2 cut(s)	173, 455
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	4 cut(s)	67, 148, 406, 433
BseMII	CTCAG	2 cut(s)	286, 360
BseNI	ACTGG	2 cut(s)	173, 455
BseXI	GCAGC	2 cut(s)	431, 617
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	525
BsiHKCI	CYCGRG	2 cut(s)	82, 533
BsmAI	GTCTC	2 cut(s)	138, 642
Bso31I	GGTCTC	1 cut(s)	642
BsoBI	CYCGRG	2 cut(s)	82, 533
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	2 cut(s)	137, 608
BspCNI	CTCAG	2 cut(s)	285, 361
BspLI	GGNNCC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	173, 455
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	1 cut(s)	330
BssNAI	GTATAC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	555
Bst1107I	GTATAC	1 cut(s)	257
Bst4CI	ACNGT	4 cut(s)	132, 463, 582, 651
BstDEI	CTNAG	2 cut(s)	272, 369
BstF5I	GGATG	4 cut(s)	67, 148, 406, 433
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	2 cut(s)	138, 642
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 370, 416, 506, 548
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	431, 617
BstZ17I	GTATAC	1 cut(s)	257
BtsCI	GGATG	4 cut(s)	67, 148, 406, 433
BtsIMutI	CAGTG	2 cut(s)	128, 587
CaiI	CAGNNNCTG	1 cut(s)	461
Csp6I	GTAC	2 cut(s)	440, 642
CviAII	CATG	3 cut(s)	58, 446, 480
CviQI	GTAC	2 cut(s)	440, 642
DdeI	CTNAG	2 cut(s)	272, 369
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	2 cut(s)	82, 533
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	3 cut(s)	61, 449, 483
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	3 cut(s)	57, 445, 479
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	420, 606
FokI	GGATG	4 cut(s)	74, 155, 413, 440
Fsp4HI	GCNGC	2 cut(s)	420, 606
FspBI	CTAG	2 cut(s)	341, 390
GluI	GCNGC	2 cut(s)	420, 606
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	156
Hin1II	CATG	3 cut(s)	61, 449, 483
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	536, 590
HpaI	GTTAAC	1 cut(s)	162
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	4 cut(s)	162, 248, 257, 619
Hpy188I	TCNGA	4 cut(s)	123, 275, 310, 370
Hpy188III	TCNNGA	4 cut(s)	215, 232, 383, 594
Hpy8I	GTNNAC	4 cut(s)	162, 248, 257, 619
HpyCH4III	ACNGT	4 cut(s)	132, 463, 582, 651
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	542, 605, 626
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 370, 416, 506, 548
HpyF3I	CTNAG	2 cut(s)	272, 369
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	61, 449, 483
KspAI	GTTAAC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	2 cut(s)	175, 556
LpnPI	CCDG	9 cut(s)	8, 125, 167, 186, 228, 461, 468, 558, 579
Lsp1109I	GCAGC	2 cut(s)	431, 617
LweI	GCATC	2 cut(s)	314, 391
MaeI	CTAG	2 cut(s)	341, 390
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	343, 457
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	2 cut(s)	425, 609
MluCI	AATT	4 cut(s)	33, 75, 276, 435
MlyI	GAGTC	1 cut(s)	545
MnlI	CCTC	8 cut(s)	31, 105, 142, 234, 245, 295, 391, 558
MroXI	GAANNNNTTC	2 cut(s)	291, 471
MseI	TTAA	3 cut(s)	98, 161, 527
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	3 cut(s)	139, 181, 608
MwoI	GCNNNNNNNGC	5 cut(s)	47, 370, 416, 506, 548
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	3 cut(s)	61, 449, 483
NlaIV	GGNNCC	1 cut(s)	171
OliI	CACNNNNGTG	1 cut(s)	84
PdmI	GAANNNNTTC	2 cut(s)	291, 471
PfeI	GAWTC	1 cut(s)	590
PkrI	GCNGC	2 cut(s)	421, 607
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	441, 643
RsaNI	GTAC	2 cut(s)	440, 642
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	98, 161, 527
SatI	GCNGC	2 cut(s)	420, 606
Sau3AI	GATC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	545
SetI	ASST	7 cut(s)	116, 183, 240, 256, 294, 355, 553
SfaNI	GCATC	2 cut(s)	314, 391
SfcI	CTRYAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	84
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	4 cut(s)	33, 75, 276, 435
SsiI	CCGC	2 cut(s)	137, 608
SspMI	CTAG	2 cut(s)	341, 390
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	4 cut(s)	132, 463, 582, 651
TaiI	ACGT	1 cut(s)	240
TasI	AATT	4 cut(s)	33, 75, 276, 435
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	3 cut(s)	98, 161, 527
Tru9I	TTAA	3 cut(s)	98, 161, 527
TscAI	CASTG	2 cut(s)	135, 587
TseI	GCWGC	2 cut(s)	419, 605
TspDTI	ATGAA	1 cut(s)	27
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	135, 587
XapI	RAATTY	2 cut(s)	75, 276
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	2 cut(s)	291, 471
XspI	CTAG	2 cut(s)	341, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.