Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014409

Physical Location & Seq

Genomic Coordinates Reverse (-)

3731847 .. 3736980

Gene Structure 5134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G052700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGACGGACTATATACAAGAGCAAGAGATGGAAATTGAAGCGTTGGAAGCAATACTTATGGATGATTTCAAAGAAATTCACTCGGGTGAGAGTGGGTTAAACACTTCCAAGAGGTGTTTTCAAATAAAAGTAACTCCAGTGGATGATGAGGCAGATGAAGTAACAACTGCTCCAGTTCAGCTGGCTTTGATTTTCTCACACACAGAAAGATATCCAGATGAGCCTCCGCTTTTGAATTTGAACAGTTTACGTGGTATACAAGGTGAACATCTTAGAATTTTGAAAGAAAAGCTTCAACAAGAGGCATCTGAAAATCTTGGTATGGCTATGATCTACACACTAGTTACATCAGCTAAAGAATGGCTTTCTGAGCAATATTGTCAAGACACTAGTATTGAGGATGCTGAAGCAGAAGAAGCAGCAAAGGATGATGTAATTGTACCACATGGAGAACCTGTTACTGTTGAAACATTTCTGGCATGGAGAGAGATGTTTGAAGCAGAATTGGCACTTGAGCGAGCCAAGTTAATGCCTGAGGCTGCGCTTTCAGCACCCAAGGAAAAGAGGCTCACAGGTAGACAGTGGTTTGAAAGTGGAAGACATGCTGTGAAAGGAGCAGCCCCAGCCACTGAAGGGTCTGATGAAGAAGATGTGGAAGACATCGACTTCGACGATGATGATTTTGAAGATGATGAAGACGATATGCTTGAACACTATTTGGCTGAGAAAACCGACTTGTCATCCCACTCTTCCAAGAGAGAGACTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010469 GO:0010556 GO:0010646 GO:0010647 GO:0014070 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032991 GO:0033143 GO:0033145 GO:0033554 GO:0033574 GO:0033993 GO:0034599 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043401 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060765 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071383 GO:0071394 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0080090 GO:1901564 GO:1901566 GO:1901576 GO:1901654 GO:1901655 GO:1901700 GO:1901701 GO:1903506 GO:1990904 GO:2000112 GO:2000273 GO:2000823 GO:2000825 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

257

Amino Acids

28.98

Weight (kDa)

4.26

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51730
fragaria_vesca	FvH4_6g32940
malus_domestica	MD09G1196300.v1.1 MD17G1177100.v1.1
prunus_persica	Prupe.3G052700_v2.0.a1
pyrus_communis	pycom09g11340 pycom17g18600
rosa_chinensis	RchiOBHm_Chr2g0142451
rosa_multiflora	Rmu_sc0001211.1_g000015 Rmu_sc0005700.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102590
rosa_rugosa	Rorug02G0372900
rosa_samantha	Rh2AG424500 Rh2BG434200 Rh2CG411100 Rh2DG444200
rosa_wichuraiana	Rw2G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	256, 577
AciI	CCGC	1 cut(s)	227
AcsI	RAATTY	3 cut(s)	75, 235, 276
AcuI	CTGAAG	2 cut(s)	426, 651
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	633
AhlI	ACTAGT	2 cut(s)	340, 389
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	3 cut(s)	181, 292, 353
AluI	AGCT	3 cut(s)	181, 292, 353
Alw26I	GTCTC	1 cut(s)	755
AlwNI	CAGNNNCTG	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	82
ApeKI	GCWGC	3 cut(s)	419, 539, 617
ApoI	RAATTY	3 cut(s)	75, 235, 276
ArsI	GACNNNNNNTTYG	2 cut(s)	650, 682
Asp700I	GAANNNNTTC	2 cut(s)	291, 471
AspLEI	GCGC	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	98, 275
AvaI	CYCGRG	1 cut(s)	82
AxyI	CCTNAGG	1 cut(s)	534
BbsI	GAAGAC	3 cut(s)	604, 663, 702
BbvI	GCAGC	3 cut(s)	431, 526, 629
BccI	CCATC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	755
BcuI	ACTAGT	2 cut(s)	340, 389
BfaI	CTAG	3 cut(s)	341, 390, 769
BisI	GCNGC	3 cut(s)	420, 540, 618
BlsI	GCNGC	3 cut(s)	421, 541, 619
BmeT110I	CYCGRG	1 cut(s)	82
BmsI	GCATC	2 cut(s)	314, 391
BpiI	GAAGAC	3 cut(s)	604, 663, 702
BpmI	CTGGAG	2 cut(s)	120, 156
BpuEI	CTTGAG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	555
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 441, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	633
Bse1I	ACTGG	2 cut(s)	137, 173
Bse21I	CCTNAGG	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	5 cut(s)	67, 148, 406, 433, 740
BseLI	CCNNNNNNNGG	1 cut(s)	633
BseMII	CTCAG	3 cut(s)	360, 525, 714
BseNI	ACTGG	2 cut(s)	137, 173
BseXI	GCAGC	3 cut(s)	431, 526, 629
BseYI	CCCAGC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	633
BsmAI	GTCTC	1 cut(s)	755
BsoBI	CYCGRG	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	1 cut(s)	227
BspCNI	CTCAG	3 cut(s)	361, 526, 715
BsrI	ACTGG	2 cut(s)	137, 173
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	1 cut(s)	330
BssNAI	GTATAC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	555
Bst1107I	GTATAC	1 cut(s)	257
Bst4CI	ACNGT	3 cut(s)	245, 463, 582
Bst6I	CTCTTC	1 cut(s)	754
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	183, 519
BstDEI	CTNAG	4 cut(s)	272, 369, 534, 723
BstF5I	GGATG	5 cut(s)	67, 148, 406, 433, 740
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	1 cut(s)	755
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 370, 416, 506, 548, 623
BstNSI	RCATGY	1 cut(s)	605
BstV1I	GCAGC	3 cut(s)	431, 526, 629
BstV2I	GAAGAC	3 cut(s)	604, 663, 702
BstZ17I	GTATAC	1 cut(s)	257
Bsu36I	CCTNAGG	1 cut(s)	534
BtsCI	GGATG	5 cut(s)	67, 148, 406, 433, 740
BtsIMutI	CAGTG	3 cut(s)	144, 587, 627
Cac8I	GCNNGC	2 cut(s)	183, 519
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	3 cut(s)	446, 480, 602
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	4 cut(s)	272, 369, 534, 723
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	754
EarI	CTCTTC	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	212
Eco57I	CTGAAG	2 cut(s)	426, 651
Eco81I	CCTNAGG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	82
EcoRV	GATATC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	3 cut(s)	449, 483, 605
FalI	AAGNNNNNCTT	6 cut(s)	39, 71, 276, 308, 348, 380
FatI	CATG	3 cut(s)	445, 479, 601
FblI	GTMKAC	2 cut(s)	256, 577
Fnu4HI	GCNGC	3 cut(s)	420, 540, 618
FokI	GGATG	5 cut(s)	74, 155, 413, 440, 727
Fsp4HI	GCNGC	3 cut(s)	420, 540, 618
FspBI	CTAG	3 cut(s)	341, 390, 769
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	3 cut(s)	420, 540, 618
GsaI	CCCAGC	1 cut(s)	626
GsuI	CTGGAG	2 cut(s)	120, 156
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	3 cut(s)	449, 483, 605
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HindIII	AAGCTT	1 cut(s)	290
HphI	GGTGA	2 cut(s)	98, 275
Hpy166II	GTNNAC	4 cut(s)	248, 257, 266, 578
Hpy188I	TCNGA	3 cut(s)	310, 370, 640
Hpy188III	TCNNGA	2 cut(s)	215, 383
Hpy8I	GTNNAC	4 cut(s)	248, 257, 266, 578
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	1 cut(s)	626
HpyCH4III	ACNGT	3 cut(s)	245, 463, 582
HpyCH4IV	ACGT	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 370, 416, 506, 548, 623
HpyF3I	CTNAG	4 cut(s)	272, 369, 534, 723
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	3 cut(s)	449, 483, 605
HspAI	GCGC	1 cut(s)	542
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	2 cut(s)	175, 614
LpnPI	CCDG	9 cut(s)	150, 167, 186, 228, 461, 468, 546, 558, 636
Lsp1109I	GCAGC	3 cut(s)	431, 526, 629
LweI	GCATC	2 cut(s)	314, 391
MaeI	CTAG	3 cut(s)	341, 390, 769
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	4 cut(s)	130, 160, 343, 457
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	8 cut(s)	425, 609, 656, 659, 668, 698, 707, 741
MluCI	AATT	6 cut(s)	33, 75, 235, 276, 435, 503
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	7 cut(s)	105, 142, 234, 295, 391, 529, 558
MroXI	GAANNNNTTC	2 cut(s)	291, 471
MseI	TTAA	2 cut(s)	98, 527
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	181
MwoI	GCNNNNNNNGC	6 cut(s)	47, 370, 416, 506, 548, 623
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	3 cut(s)	449, 483, 605
NspI	RCATGY	1 cut(s)	605
OliI	CACNNNNGTG	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	669
PdmI	GAANNNNTTC	2 cut(s)	291, 471
PkrI	GCNGC	3 cut(s)	421, 541, 619
Ppu21I	YACGTR	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	98, 527
SatI	GCNGC	3 cut(s)	420, 540, 618
Sau3AI	GATC	1 cut(s)	330
SetI	ASST	8 cut(s)	116, 183, 253, 265, 294, 355, 457, 577
SfaNI	GCATC	2 cut(s)	314, 391
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SpeI	ACTAGT	2 cut(s)	340, 389
Sse9I	AATT	6 cut(s)	33, 75, 235, 276, 435, 503
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	377
SspMI	CTAG	3 cut(s)	341, 390, 769
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	3 cut(s)	245, 463, 582
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	663, 669
TasI	AATT	6 cut(s)	33, 75, 235, 276, 435, 503
Tru1I	TTAA	2 cut(s)	98, 527
Tru9I	TTAA	2 cut(s)	98, 527
TscAI	CASTG	3 cut(s)	144, 587, 634
TseI	GCWGC	3 cut(s)	419, 539, 617
TspDTI	ATGAA	3 cut(s)	171, 657, 708
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	3 cut(s)	144, 587, 634
XapI	RAATTY	3 cut(s)	75, 235, 276
XceI	RCATGY	1 cut(s)	605
XmiI	GTMKAC	2 cut(s)	256, 577
XmnI	GAANNNNTTC	2 cut(s)	291, 471
XspI	CTAG	3 cut(s)	341, 390, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.