Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014409

Physical Location & Seq

Genomic Coordinates Forward (+)

25992987 .. 25997910

Gene Structure 4924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGACGGATTATGAACAAGAACAGGAGATGGAAATTGAGGCATTGGAGGCAATACTCATGGATGATTTCAAAGAAATTCACTCGGGAGAGAGTGGGTTAAATGCTACCAAGAAATGTTTTCAGATAACACTATCTCCGCTGGATGATGAGGCAGATGAGTTAACTACGGCTCCAGTTCAGCTGGGTTTGATCTTCTCACACATGGAAAAATATCCAGACGAGCCTCCACTCTTGAACGTGAGAAGTATACGAGGGATACACGGAGAACATATCAGAATTTTGAGAGAAAAGCTTCAGCAAGAGGCATATGAAAATCTTGGTATGGCTATGATCTATACGCTAGTTACATCAGCTAAAGAATGGCTTTCTGAGCAATATGGTCAAGACACTAGTATTGAGGATGCTATAGCAGCAGAAGAAGCAGCAAAGGATGACATAATTGTGCCTCATGGAGAACCGGTTACTTATGAAACATTTCTGGCATGGAGAGAAATGTTTGAAGCAGAGTTGGCACTTGAACGAGCCAAGTTAATGCCCGAGTCTGCACTTTCAGCTCCCAAGGAAAAGAGGCTCACAGGCAGACAGTGGTTTGAAACTGGAAGAGCTGCAGCGAGAGGTGCAGCCACAGCCGCAGAAGGCTCTGATGAAGAAGATGATGAAGATATTGACTTCGATGATGAGGACTTTGAAGATGATGAAGATGATATGCTTGAGCACTATTTGGCAGCTGAAAAATCCGACTCATCCTCCCACTCTTCCAGGAGAGCAGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010469 GO:0010556 GO:0010646 GO:0010647 GO:0014070 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032991 GO:0033143 GO:0033145 GO:0033554 GO:0033574 GO:0033993 GO:0034599 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043401 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060765 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071383 GO:0071394 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0080090 GO:1901564 GO:1901566 GO:1901576 GO:1901654 GO:1901655 GO:1901700 GO:1901701 GO:1903506 GO:1990904 GO:2000112 GO:2000273 GO:2000823 GO:2000825 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

259

Amino Acids

29.11

Weight (kDa)

4.26

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWD	PF05773	6 - 122	1.6e-24	RWD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51730
fragaria_vesca	FvH4_6g32940
malus_domestica	MD09G1196300.v1.1 MD17G1177100.v1.1
prunus_persica	Prupe.3G052700_v2.0.a1
pyrus_communis	pycom09g11340 pycom17g18600
rosa_chinensis	RchiOBHm_Chr2g0142451
rosa_multiflora	Rmu_sc0001211.1_g000015 Rmu_sc0005700.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102590
rosa_rugosa	Rorug02G0372900
rosa_samantha	Rh2AG424500 Rh2BG434200 Rh2CG411100 Rh2DG444200
rosa_wichuraiana	Rw2G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	247
AciI	CCGC	2 cut(s)	137, 630
AcsI	RAATTY	2 cut(s)	75, 276
AcuI	CTGAAG	1 cut(s)	278
AgeI	ACCGGT	1 cut(s)	457
AgsI	TTSAA	6 cut(s)	70, 235, 500, 518, 593, 689
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	758
AluBI	AGCT	7 cut(s)	181, 292, 353, 554, 605, 728, 770
AluI	AGCT	7 cut(s)	181, 292, 353, 554, 605, 728, 770
Alw21I	GWGCWC	1 cut(s)	717
Ama87I	CYCGRG	2 cut(s)	82, 536
ApeKI	GCWGC	7 cut(s)	410, 422, 605, 608, 620, 725, 767
ApoI	RAATTY	2 cut(s)	75, 276
AsiGI	ACCGGT	1 cut(s)	457
Asp700I	GAANNNNTTC	2 cut(s)	291, 474
AvaI	CYCGRG	2 cut(s)	82, 536
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	6 cut(s)	422, 434, 592, 620, 632, 737
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	760
BciVI	GTATCC	1 cut(s)	249
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	2 cut(s)	341, 390
BfmI	CTRYAG	2 cut(s)	405, 606
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	8 cut(s)	411, 423, 606, 609, 621, 630, 726, 768
BlsI	GCNGC	8 cut(s)	412, 424, 607, 610, 622, 631, 727, 769
Bme1390I	CCNGG	1 cut(s)	760
BmeT110I	CYCGRG	2 cut(s)	82, 536
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	760
BmsI	GCATC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	731
BsaJI	CCNNGG	1 cut(s)	558
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	8 cut(s)	118, 148, 154, 184, 444, 474, 731, 761
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	2 cut(s)	173, 601
BseBI	CCWGG	1 cut(s)	760
BseDI	CCNNGG	1 cut(s)	558
BseGI	GGATG	5 cut(s)	67, 148, 406, 436, 743
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	173, 601
BseXI	GCAGC	6 cut(s)	422, 434, 592, 620, 632, 737
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	2 cut(s)	528, 639
BshTI	ACCGGT	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	717
BsiHKCI	CYCGRG	2 cut(s)	82, 536
BsiSI	CCGG	1 cut(s)	458
BsoBI	CYCGRG	2 cut(s)	82, 536
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp143I	GATC	2 cut(s)	189, 330
BspACI	CCGC	2 cut(s)	137, 630
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	610
BspQI	GCTCTTC	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	173, 601
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	558
BssMI	GATC	2 cut(s)	189, 330
BssNAI	GTATAC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	558
Bst1107I	GTATAC	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	760
Bst4CI	ACNGT	1 cut(s)	585
Bst6I	CTCTTC	2 cut(s)	595, 760
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	5 cut(s)	67, 148, 406, 436, 743
BstKTI	GATC	2 cut(s)	192, 333
BstMBI	GATC	2 cut(s)	189, 330
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 370, 410, 419, 509, 551, 617, 626, 629
BstNI	CCWGG	1 cut(s)	760
BstSCI	CCNGG	1 cut(s)	758
BstSFI	CTRYAG	2 cut(s)	405, 606
BstV1I	GCAGC	6 cut(s)	422, 434, 592, 620, 632, 737
BstZ17I	GTATAC	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	249
BtsCI	GGATG	5 cut(s)	67, 148, 406, 436, 743
BtsIMutI	CAGTG	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	457
CspAI	ACCGGT	1 cut(s)	457
CviAII	CATG	4 cut(s)	58, 202, 449, 483
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	2 cut(s)	191, 332
DpnII	GATC	2 cut(s)	189, 330
Eam1104I	CTCTTC	2 cut(s)	595, 760
EarI	CTCTTC	2 cut(s)	595, 760
Eco130I	CCWWGG	1 cut(s)	558
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	2 cut(s)	82, 536
EcoRII	CCWGG	1 cut(s)	758
EcoT14I	CCWWGG	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	4 cut(s)	61, 205, 452, 486
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	4 cut(s)	57, 201, 448, 482
FauNDI	CATATG	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	8 cut(s)	411, 423, 606, 609, 621, 630, 726, 768
FokI	GGATG	5 cut(s)	74, 155, 413, 443, 730
Fsp4HI	GCNGC	8 cut(s)	411, 423, 606, 609, 621, 630, 726, 768
FspBI	CTAG	2 cut(s)	341, 390
GluI	GCNGC	8 cut(s)	411, 423, 606, 609, 621, 630, 726, 768
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	156
HapII	CCGG	1 cut(s)	458
Hin1II	CATG	4 cut(s)	61, 205, 452, 486
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	539, 740
HpaI	GTTAAC	1 cut(s)	162
HpaII	CCGG	1 cut(s)	458
Hpy166II	GTNNAC	2 cut(s)	162, 248
Hpy188I	TCNGA	5 cut(s)	123, 275, 370, 643, 739
Hpy188III	TCNNGA	4 cut(s)	84, 215, 232, 383
Hpy8I	GTNNAC	2 cut(s)	162, 248
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	545, 608, 620
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 370, 410, 419, 509, 551, 617, 626, 629
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	61, 205, 452, 486
KspAI	GTTAAC	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	189, 330
LguI	GCTCTTC	1 cut(s)	595
LmnI	GCTCC	2 cut(s)	175, 559
Lsp1109I	GCAGC	6 cut(s)	422, 434, 592, 620, 632, 737
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	341, 390
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	343, 460
MalI	GATC	2 cut(s)	191, 332
MboI	GATC	2 cut(s)	189, 330
MboII	GAAGA	9 cut(s)	184, 428, 612, 659, 662, 671, 701, 710, 747
MhlI	GDGCHC	1 cut(s)	717
MluCI	AATT	5 cut(s)	33, 75, 276, 438, 772
MlyI	GAGTC	2 cut(s)	548, 734
MmeI	TCCRAC	1 cut(s)	762
MroXI	GAANNNNTTC	2 cut(s)	291, 474
MseI	TTAA	3 cut(s)	98, 161, 530
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	3 cut(s)	139, 181, 728
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	760
MwoI	GCNNNNNNNGC	9 cut(s)	47, 370, 410, 419, 509, 551, 617, 626, 629
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	2 cut(s)	189, 330
NlaIII	CATG	4 cut(s)	61, 205, 452, 486
NlaIV	GGNNCC	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	595
PdmI	GAANNNNTTC	2 cut(s)	291, 474
PfoI	TCCNGGA	1 cut(s)	758
PinAI	ACCGGT	1 cut(s)	457
PkrI	GCNGC	8 cut(s)	412, 424, 607, 610, 622, 631, 727, 769
PleI	GAGTC	2 cut(s)	547, 734
PpsI	GAGTC	2 cut(s)	547, 734
Psp6I	CCWGG	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	758
PspN4I	GGNNCC	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	610
PvuII	CAGCTG	2 cut(s)	181, 728
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	595
SaqAI	TTAA	3 cut(s)	98, 161, 530
SatI	GCNGC	8 cut(s)	411, 423, 606, 609, 621, 630, 726, 768
Sau3AI	GATC	2 cut(s)	189, 330
SchI	GAGTC	2 cut(s)	548, 734
ScrFI	CCNGG	1 cut(s)	760
SduI	GDGCHC	1 cut(s)	717
SetI	ASST	9 cut(s)	183, 240, 294, 355, 556, 607, 619, 730, 772
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	2 cut(s)	405, 606
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	5 cut(s)	33, 75, 276, 438, 772
SsiI	CCGC	2 cut(s)	137, 630
SspMI	CTAG	2 cut(s)	341, 390
StyD4I	CCNGG	1 cut(s)	758
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	585
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	672
TasI	AATT	5 cut(s)	33, 75, 276, 438, 772
TauI	GCSGC	1 cut(s)	632
Tru1I	TTAA	3 cut(s)	98, 161, 530
Tru9I	TTAA	3 cut(s)	98, 161, 530
TscAI	CASTG	1 cut(s)	590
TseI	GCWGC	7 cut(s)	410, 422, 605, 608, 620, 725, 767
TspDTI	ATGAA	6 cut(s)	27, 324, 483, 660, 672, 711
TspGWI	ACGGA	2 cut(s)	20, 276
TspRI	CASTG	1 cut(s)	590
XapI	RAATTY	2 cut(s)	75, 276
XmiI	GTMKAC	1 cut(s)	247
XmnI	GAANNNNTTC	2 cut(s)	291, 474
XspI	CTAG	2 cut(s)	341, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.