AT1G52770

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015272
Physical Location & Seq
Forward (+)
19655831 .. 19657795
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52770.1

Sequence Viewer

Length: 1365 bp
ATGGACAAAACATCTTCGCCGGAATCTGCCACCATCTCCACCAAATCTCCGTCAACCTCCACCGGAAAAATGGAGTGTTCTTGGTTCGACGATGGTTGCATTCTTGGCATTGATTATTTCGTCAAAACCATCGCCGGAATCAAATCCAAAGGTGTTCGTCCTGATCTCATTGGATCCATCATCGTTCATTACGCTTCCCAATGGCTCCCTGACCTCTCCGACATCGTCCTAAACTCCGATGACCAGCAACCGCAGCCGCAGCAGCAGTCAGAGAGCTTCTCTGTTACTGCGTTTGTGATGAAGAAACGTTCCTTCGTCGAAACTCTAATCGGAATCATCCCACCTGAGAGAGATTCCGTTCCTTGTGATTTCCTCCTCCGTCTACTCAGAACCGCGAACATGGTCGGAGCAGATGCAAATTACAAGGCGGAGCTCGAGGCGAGGATTTCATGGCAGCTTGATCAAGCTTCACTCAAGGAGCTAATGATACCTTCCTTTAGTCACACGTGTGGGACATTGCTCGATGTCGAGCTCATGACTCGGTTGGTTAAGAAATTTGCTGGCTTAGACAACGAAGGAGTTAAATCCGGTGCTTCCCTAATTAAAGTAGCGAAGCTCGTGGACTCTTACTTAGCAGAAGCCGCCTTAGACGGCGATTTAACCCTCTCGGAGTTTATATCTCTCGTCGAAGCTCTCCCTAACCATGCTCGTGTAACCGAAGATGGGTTATACCGTGCAATTGACACTTATCTCAAGGCACATCCTAACGTGACCAAGCAAGAAAGGAAGAGACTTTGTGGACTAATAGACAGCAATAAGCTATCAATGGAGGCATCTCTTCACGCTGCACAGAACGATCGTTTACCGGTTAGAACTATTATTCAAGTTTTGTTCTCTGAACAGGCAAAGCTGAGTCATCGCAGCCACAACAATATTGAATGGAGTGGTTCATCGTTCAGTGGCGTTAGGAGCAGCCCTAATCCTTCTGGTTCACACTACTCAGATTCTGGTCCTGCGCGGTGTACGTCCAAACGCGAGATTAATGTTCAGCAAGCAGAGATAAGAAGATTGAGAGAAGATATGGCGAAGCTTAAGTGCGAGTGTGAAGCGATGCAAACACAGTTACATAAGCTGGTTGAGAAGAAAGGAACTTGTACTAGTGGGAATAAAGGTTTTTTTAGGTGGAAGAAGTTGGGATTTAGGAGCGGTTTAAGCGTTAGCGTTGTGGAAAACACGAATGGTGAAGAGTTTGGTAATAATGGAGAAGGTGAAAATTTTGAGTATGTGACTCAAACGCCTGGTAATATGATGACAAAGCTTGTTAAAGGAAGAACACCTTCTAGGTGGAGAAAATCTATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPH3

Protein Analysis

454

Amino Acids

50.31

Weight (kDa)

8.26

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 28 - 279 1.6e-81 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52770 AT3G15570
fragaria_vesca FvH4_6g30650
malus_domestica MD17G1201600.v1.1
prunus_persica Prupe.3G077500_v2.0.a1
pyrus_communis pycom17g20550
rosa_chinensis RchiOBHm_Chr2g0137051
rosa_laevigata RLG00000019602
rosa_multiflora Rmu_sc0001374.1_g000031
rosa_roxburghii Rroxscaffold_2G00107740
rosa_rugosa Rorug02G0337600
rosa_samantha Rh2AG386500 Rh2BG393500 Rh2CG373800 Rh2DG409500
rosa_wichuraiana Rw2G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1206
AccI GTMKAC 1 cut(s) 382
AccII CGCG 3 cut(s) 395, 1018, 1035
AciI CCGC 7 cut(s) 251, 257, 393, 428, 642, 1018, 1206
AclI AACGTT 1 cut(s) 307
AclWI GGATC 2 cut(s) 168, 181
AcsI RAATTY 2 cut(s) 554, 1273
AcvI CACGTG 1 cut(s) 507
AfaI GTAC 2 cut(s) 1024, 1156
AfiI CCNNNNNNNGG 1 cut(s) 723
AflII CTTAAG 1 cut(s) 1091
AflIII ACRYGT 2 cut(s) 504, 506
AgeI ACCGGT 1 cut(s) 865
AgsI TTSAA 2 cut(s) 884, 938
AhlI ACTAGT 1 cut(s) 1157
AjnI CCWGG 1 cut(s) 1297
AleI CACNNNNGTG 1 cut(s) 507
Alw21I GWGCWC 2 cut(s) 435, 534
Alw26I GTCTC 1 cut(s) 784
AlwI GGATC 2 cut(s) 168, 181
AlwNI CAGNNNCTG 1 cut(s) 1007
Ama87I CYCGRG 1 cut(s) 434
ApeKI GCWGC 7 cut(s) 253, 259, 262, 454, 845, 921, 972
ApoI RAATTY 2 cut(s) 554, 1273
AseI ATTAAT 1 cut(s) 1041
AsiGI ACCGGT 1 cut(s) 865
Asp700I GAANNNNTTC 1 cut(s) 1336
AspLEI GCGC 1 cut(s) 1018
AspS9I GGNCC 1 cut(s) 1010
AsuHPI GGTGA 2 cut(s) 1253, 1280
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 1 cut(s) 1010
BamHI GGATCC 1 cut(s) 173
BanII GRGCYC 2 cut(s) 435, 534
BauI CACGAG 2 cut(s) 617, 708
BbrPI CACGTG 1 cut(s) 507
Bbv12I GWGCWC 2 cut(s) 435, 534
BbvI GCAGC 7 cut(s) 265, 271, 274, 466, 832, 933, 984
BccI CCATC 5 cut(s) 41, 86, 137, 185, 716
BceAI ACGGC 1 cut(s) 667
BciT130I CCWGG 1 cut(s) 1299
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 784
BcuI ACTAGT 1 cut(s) 1157
BfaI CTAG 2 cut(s) 1158, 1341
BfrI CTTAAG 1 cut(s) 1091
BisI GCNGC 9 cut(s) 254, 257, 260, 263, 455, 642, 846, 922, 973
BlsI GCNGC 9 cut(s) 255, 258, 261, 264, 456, 643, 847, 923, 974
Bme1390I CCNGG 1 cut(s) 1299
Bme18I GGWCC 1 cut(s) 1010
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 1010
BmiI GGNNCC 2 cut(s) 175, 206
BmrFI CCNGG 1 cut(s) 1299
BmsI GCATC 3 cut(s) 403, 842, 1101
BplI GAGNNNNNCTC 2 cut(s) 263, 295
BpuEI CTTGAG 2 cut(s) 458, 737
BsaAI YACGTR 1 cut(s) 507
BsaWI WCCGGW 3 cut(s) 62, 587, 865
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 1 cut(s) 723
Bse118I RCCGGY 1 cut(s) 865
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 1299
BseGI GGATG 2 cut(s) 336, 760
BseLI CCNNNNNNNGG 1 cut(s) 723
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 4 cut(s) 336, 400, 902, 1014
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 7 cut(s) 265, 271, 274, 466, 832, 933, 984
BsgI GTGCAG 1 cut(s) 831
Bsh1236I CGCG 3 cut(s) 395, 1018, 1035
Bsh1285I CGRYCG 1 cut(s) 859
BshTI ACCGGT 1 cut(s) 865
BsiEI CGRYCG 1 cut(s) 859
BsiHKAI GWGCWC 2 cut(s) 435, 534
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 5 cut(s) 20, 63, 135, 588, 866
BslFI GGGAC 1 cut(s) 526
BslI CCNNNNNNNGG 1 cut(s) 723
BsmAI GTCTC 1 cut(s) 784
BsmFI GGGAC 1 cut(s) 526
BsmI GAATGC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 434
Bsp1286I GDGCHC 2 cut(s) 435, 534
Bsp143I GATC 4 cut(s) 163, 173, 460, 856
BspACI CCGC 7 cut(s) 251, 257, 393, 428, 642, 1018, 1206
BspCNI CTCAG 4 cut(s) 337, 399, 903, 1013
BspFNI CGCG 3 cut(s) 395, 1018, 1035
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 175, 206
BspPI GGATC 2 cut(s) 168, 181
BspTI CTTAAG 1 cut(s) 1091
BsrBI CCGCTC 1 cut(s) 1206
BsrDI GCAATG 1 cut(s) 515
BsrFI RCCGGY 1 cut(s) 865
BssAI RCCGGY 1 cut(s) 865
BssMI GATC 4 cut(s) 163, 173, 460, 856
BssSI CACGAG 2 cut(s) 617, 708
Bst2BI CACGAG 2 cut(s) 617, 708
Bst2UI CCWGG 1 cut(s) 1299
Bst4CI ACNGT 2 cut(s) 734, 1122
Bst6I CTCTTC 3 cut(s) 782, 843, 1239
BstAFI CTTAAG 1 cut(s) 1091
BstBAI YACGTR 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 562, 1053
BstDEI CTNAG 7 cut(s) 345, 386, 565, 631, 646, 911, 1000
BstF5I GGATG 2 cut(s) 336, 760
BstFNI CGCG 3 cut(s) 395, 1018, 1035
BstHHI GCGC 1 cut(s) 1018
BstKTI GATC 4 cut(s) 166, 176, 463, 859
BstMAI GTCTC 1 cut(s) 784
BstMBI GATC 4 cut(s) 163, 173, 460, 856
BstMCI CGRYCG 1 cut(s) 859
BstMWI GCNNNNNNNGC 7 cut(s) 105, 253, 259, 262, 641, 969, 1212
BstNI CCWGG 1 cut(s) 1299
BstSCI CCNGG 1 cut(s) 1297
BstUI CGCG 3 cut(s) 395, 1018, 1035
BstV1I GCAGC 7 cut(s) 265, 271, 274, 466, 832, 933, 984
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BtgZI GCGATG 3 cut(s) 115, 902, 1124
BtsCI GGATG 2 cut(s) 336, 760
BtsIMutI CAGTG 1 cut(s) 964
Cac8I GCNNGC 2 cut(s) 562, 1053
CaiI CAGNNNCTG 1 cut(s) 1007
CciI TCATGA 1 cut(s) 534
CfoI GCGC 1 cut(s) 1018
Cfr10I RCCGGY 1 cut(s) 865
Cfr13I GGNCC 1 cut(s) 1010
Csp6I GTAC 2 cut(s) 1023, 1155
CspAI ACCGGT 1 cut(s) 865
CviAII CATG 4 cut(s) 400, 450, 535, 704
CviQI GTAC 2 cut(s) 1023, 1155
DdeI CTNAG 7 cut(s) 345, 386, 565, 631, 646, 911, 1000
DpnI GATC 4 cut(s) 165, 175, 462, 858
DpnII GATC 4 cut(s) 163, 173, 460, 856
Eam1104I CTCTTC 3 cut(s) 782, 843, 1239
EarI CTCTTC 3 cut(s) 782, 843, 1239
EciI GGCGGA 1 cut(s) 443
Ecl136II GAGCTC 2 cut(s) 433, 532
Eco24I GRGCYC 2 cut(s) 435, 534
Eco47I GGWCC 1 cut(s) 1010
Eco53kI GAGCTC 2 cut(s) 433, 532
Eco72I CACGTG 1 cut(s) 507
Eco88I CYCGRG 1 cut(s) 434
EcoICRI GAGCTC 2 cut(s) 433, 532
EcoRII CCWGG 1 cut(s) 1297
EcoT38I GRGCYC 2 cut(s) 435, 534
FaeI CATG 4 cut(s) 403, 453, 538, 707
FalI AAGNNNNNCTT 2 cut(s) 1321, 1353
FaqI GGGAC 1 cut(s) 526
FatI CATG 4 cut(s) 399, 449, 534, 703
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 9 cut(s) 254, 257, 260, 263, 455, 642, 846, 922, 973
FokI GGATG 2 cut(s) 323, 747
FriOI GRGCYC 2 cut(s) 435, 534
Fsp4HI GCNGC 9 cut(s) 254, 257, 260, 263, 455, 642, 846, 922, 973
FspBI CTAG 2 cut(s) 1158, 1341
GlaI GCGC 1 cut(s) 1017
GluI GCNGC 9 cut(s) 254, 257, 260, 263, 455, 642, 846, 922, 973
HapII CCGG 5 cut(s) 20, 63, 135, 588, 866
HhaI GCGC 1 cut(s) 1018
Hin1II CATG 4 cut(s) 403, 453, 538, 707
Hin6I GCGC 1 cut(s) 1016
HinP1I GCGC 1 cut(s) 1016
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HindIII AAGCTT 3 cut(s) 465, 1088, 1316
HinfI GANTC 9 cut(s) 23, 138, 333, 353, 538, 623, 913, 1004, 1288
HpaII CCGG 5 cut(s) 20, 63, 135, 588, 866
HphI GGTGA 2 cut(s) 1253, 1280
Hpy166II GTNNAC 7 cut(s) 54, 383, 622, 800, 863, 992, 1023
Hpy188I TCNGA 9 cut(s) 220, 238, 271, 332, 389, 407, 670, 898, 1003
Hpy188III TCNNGA 3 cut(s) 161, 535, 1362
Hpy8I GTNNAC 7 cut(s) 54, 383, 622, 800, 863, 992, 1023
Hpy99I CGWCG 3 cut(s) 92, 320, 689
HpyAV CCTTC 6 cut(s) 322, 501, 569, 993, 1259, 1347
HpyCH4III ACNGT 2 cut(s) 734, 1122
HpyCH4IV ACGT 4 cut(s) 307, 506, 768, 1025
HpyCH4V TGCA 5 cut(s) 99, 416, 737, 848, 1114
HpyF10VI GCNNNNNNNGC 7 cut(s) 105, 253, 259, 262, 641, 969, 1212
HpyF3I CTNAG 7 cut(s) 345, 386, 565, 631, 646, 911, 1000
HpySE526I ACGT 4 cut(s) 307, 506, 768, 1025
Hsp92II CATG 4 cut(s) 403, 453, 538, 707
HspAI GCGC 1 cut(s) 1016
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 163, 173, 460, 856
LmnI GCTCC 6 cut(s) 210, 407, 430, 478, 969, 1203
Lsp1109I GCAGC 7 cut(s) 265, 271, 274, 466, 832, 933, 984
LweI GCATC 3 cut(s) 403, 842, 1101
MaeI CTAG 2 cut(s) 1158, 1341
MaeII ACGT 4 cut(s) 307, 506, 768, 1025
MaeIII GTNAC 6 cut(s) 283, 500, 712, 769, 1122, 1285
MalI GATC 4 cut(s) 165, 175, 462, 858
MbiI CCGCTC 1 cut(s) 1206
MboI GATC 4 cut(s) 163, 173, 460, 856
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 2 cut(s) 435, 534
MluCI AATT 5 cut(s) 418, 554, 600, 738, 1273
MlyI GAGTC 4 cut(s) 532, 617, 922, 1282
MmeI TCCRAC 2 cut(s) 243, 385
MnlI CCTC 8 cut(s) 67, 224, 383, 386, 430, 435, 674, 823
MroXI GAANNNNTTC 1 cut(s) 1336
MseI TTAA 8 cut(s) 549, 582, 603, 659, 1041, 1092, 1211, 1323
MslI CAYNNNNRTG 2 cut(s) 507, 708
MspCI CTTAAG 1 cut(s) 1091
MspI CCGG 5 cut(s) 20, 63, 135, 588, 866
MspR9I CCNGG 1 cut(s) 1299
MunI CAATTG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 1 cut(s) 1299
MvnI CGCG 3 cut(s) 395, 1018, 1035
MwoI GCNNNNNNNGC 7 cut(s) 105, 253, 259, 262, 641, 969, 1212
NdeII GATC 4 cut(s) 163, 173, 460, 856
NlaIII CATG 4 cut(s) 403, 453, 538, 707
NlaIV GGNNCC 2 cut(s) 175, 206
NmuCI GTSAC 3 cut(s) 500, 769, 1285
OliI CACNNNNGTG 1 cut(s) 507
PaeR7I CTCGAG 1 cut(s) 434
PagI TCATGA 1 cut(s) 534
PctI GAATGC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 1336
PfeI GAWTC 5 cut(s) 23, 138, 333, 353, 1004
PflFI GACNNNGTC 1 cut(s) 224
PinAI ACCGGT 1 cut(s) 865
PkrI GCNGC 9 cut(s) 255, 258, 261, 264, 456, 643, 847, 923, 974
Ple19I CGATCG 1 cut(s) 859
PleI GAGTC 4 cut(s) 532, 617, 921, 1282
PmaCI CACGTG 1 cut(s) 507
PmlI CACGTG 1 cut(s) 507
PpsI GAGTC 4 cut(s) 532, 617, 921, 1282
Ppu21I YACGTR 1 cut(s) 507
PshBI ATTAAT 1 cut(s) 1041
Psp124BI GAGCTC 2 cut(s) 435, 534
Psp1406I AACGTT 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 1297
PspCI CACGTG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 1297
PspN4I GGNNCC 2 cut(s) 175, 206
PspPI GGNCC 1 cut(s) 1010
PspXI VCTCGAGB 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 1007
PsuI RGATCY 1 cut(s) 173
PsyI GACNNNGTC 1 cut(s) 224
PvuI CGATCG 1 cut(s) 859
RsaI GTAC 2 cut(s) 1024, 1156
RsaNI GTAC 2 cut(s) 1023, 1155
RseI CAYNNNNRTG 2 cut(s) 507, 708
SacI GAGCTC 2 cut(s) 435, 534
SaqAI TTAA 8 cut(s) 549, 582, 603, 659, 1041, 1092, 1211, 1323
SatI GCNGC 9 cut(s) 254, 257, 260, 263, 455, 642, 846, 922, 973
Sau3AI GATC 4 cut(s) 163, 173, 460, 856
Sau96I GGNCC 1 cut(s) 1010
SchI GAGTC 4 cut(s) 532, 617, 922, 1282
ScrFI CCNGG 1 cut(s) 1299
SduI GDGCHC 2 cut(s) 435, 534
SfaNI GCATC 3 cut(s) 403, 842, 1101
Sfr274I CTCGAG 1 cut(s) 434
SinI GGWCC 1 cut(s) 1010
SlaI CTCGAG 1 cut(s) 434
SmiMI CAYNNNNRTG 2 cut(s) 507, 708
SmlI CTYRAG 4 cut(s) 434, 473, 752, 1091
SmoI CTYRAG 4 cut(s) 434, 473, 752, 1091
SpeI ACTAGT 1 cut(s) 1157
Sse9I AATT 5 cut(s) 418, 554, 600, 738, 1273
SsiI CCGC 7 cut(s) 251, 257, 393, 428, 642, 1018, 1206
SspI AATATT 1 cut(s) 934
SspMI CTAG 2 cut(s) 1158, 1341
SstI GAGCTC 2 cut(s) 435, 534
StyD4I CCNGG 1 cut(s) 1297
TaaI ACNGT 2 cut(s) 734, 1122
TaiI ACGT 4 cut(s) 310, 509, 771, 1028
TaqI TCGA 6 cut(s) 87, 318, 435, 522, 528, 687
TasI AATT 5 cut(s) 418, 554, 600, 738, 1273
TatI WGTACW 1 cut(s) 1154
TauI GCSGC 2 cut(s) 259, 644
TfiI GAWTC 5 cut(s) 23, 138, 333, 353, 1004
Tru1I TTAA 8 cut(s) 549, 582, 603, 659, 1041, 1092, 1211, 1323
Tru9I TTAA 8 cut(s) 549, 582, 603, 659, 1041, 1092, 1211, 1323
TscAI CASTG 1 cut(s) 964
TseFI GTSAC 3 cut(s) 500, 769, 1285
TseI GCWGC 7 cut(s) 253, 259, 262, 454, 845, 921, 972
Tsp45I GTSAC 3 cut(s) 500, 769, 1285
TspDTI ATGAA 4 cut(s) 176, 314, 438, 939
TspGWI ACGGA 3 cut(s) 39, 346, 368
TspRI CASTG 1 cut(s) 964
Tth111I GACNNNGTC 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 1091
VpaK11BI GGWCC 1 cut(s) 1010
VspI ATTAAT 1 cut(s) 1041
XapI RAATTY 2 cut(s) 554, 1273
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 1336
XspI CTAG 2 cut(s) 1158, 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.