AT3G15570

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015272
Physical Location & Seq
Reverse (-)
5269849 .. 5271984
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15570.1

Sequence Viewer

Length: 1359 bp
ATGAAGAAAACACTTTCGCCGGAACCCGTCACCATCTACGGCAATCGCCAAGAAACCTTCGTCGGTGATATGGAGTACTACACTTACTTCGACGAATCTTGTATCCAAGACATGAACTATTTCGTCAAAACAATCACCGGCATCAAATCCAAAGGAATCAGACCAGACCTTATCGGTTCCATCATCGCTCATTACGCTTCAAAATGGCTCCCTGATCTCTCCGGCAATGTCTCCGCCATTATTTCCTCCACCTCCTTAGAATCCAAGAACAACCACAATGACACACAGCCAGAGAGCGTCACTGCATCTGTAATGAAGAAACGGTTTTTCGTCGAAACACTAATCGGAATCCTCCCACCGGAGAAAGACTCTGTTCCTTGCAATTTCCTCCTCCGTCTCCTCAGGACAGCGAAAATGGTCGGAGCTAATCCGAATTATTTAACGGAGCTTGAAACCAGAGTATCGTGGCAGCTCGACCAAGCTTCTCTCAAGGAGCTTATGATACCTTCCTTCAGCTACACGTCTGGTACTTTGCTTGACATTGAGCTTGTGACGCGTCTCGTGAACAAGTTTTCTGGATTGGATAGTGAAGGTGTTAAAACCGCTGCGGCTCTTGTTAAAGTGGCCAAGCTTGTTGACTCCTACCTCGCTGAAGCTGCCGTTGACGGTGGTTTAGCTTTACCGGAGTTTATTTCCTTAATCACAGCTCTTCCTAGCCATGCTCGTACTACAGAGGATGGCTTGTACCGAGCCATTGATACATATCTCAAGGCACATCCTCAGGTGTTGAAGCAAGAAAGGAAGGAACTTTGTAGACTTATTGATAGCAGAAAGTTATCACCGGAAGCAGCTCTTCACGCGGCTCAGAATGATCGTTTACCGGTGAGAGCAATCATTGGAGTGTTGTTCACTGAGCAGACAAAGCTAAGTCGTCACATTGACTGTAATAGTAGCTCGATAAGCAGCACTACGAGGAGTCCAACAAACGCTTCTGGTTCACATTACCTCGAGGGAGGTTCTGCAGCGCGGTGTTTGTCTAAACGTGAGATGAATGTTCAACAAGCAGAGATAAGAAGGCTACGGGAGGATGTGGTGAGGCTGCAGAGTCAGTGTGGCGCTATGCATTTCCAGCTGGAGAGGCTTATGGAGAAGAAGAGTAGTGGTGGGAGTAAAGGTTTTTTCCGGTGGAAGAGGCTCGGGTTAGTACCGTCAATTAGAGGAAGTGTTAGTGTTGAAAAGGGCGAGGAAGAATCTGGTGACAATGGTGAAGGATTTGAGCCACGGACTCCTGGTAATATGAAGACAAGGCTTGTCAAAGGAAGAACAACACCTTCAAGGTGGAGAAAATCTATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPH3

Protein Analysis

452

Amino Acids

50.2

Weight (kDa)

9.17

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 30 - 283 5.7e-77 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52770 AT3G15570
fragaria_vesca FvH4_6g30650
malus_domestica MD17G1201600.v1.1
prunus_persica Prupe.3G077500_v2.0.a1
pyrus_communis pycom17g20550
rosa_chinensis RchiOBHm_Chr2g0137051
rosa_laevigata RLG00000019602
rosa_multiflora Rmu_sc0001374.1_g000031
rosa_roxburghii Rroxscaffold_2G00107740
rosa_rugosa Rorug02G0337600
rosa_samantha Rh2AG386500 Rh2BG393500 Rh2CG373800 Rh2DG409500
rosa_wichuraiana Rw2G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1007
AccI GTMKAC 1 cut(s) 814
AccII CGCG 3 cut(s) 556, 860, 1027
AciI CCGC 5 cut(s) 234, 603, 608, 860, 1027
AcoI YGGCCR 1 cut(s) 624
AcuI CTGAAG 2 cut(s) 496, 672
AfaI GTAC 5 cut(s) 77, 529, 727, 746, 1206
AfiI CCNNNNNNNGG 1 cut(s) 358
AflIII ACRYGT 2 cut(s) 519, 554
AgeI ACCGGT 1 cut(s) 880
AgsI TTSAA 6 cut(s) 201, 452, 790, 1058, 1235, 1335
AjiI CACGTC 1 cut(s) 522
AjnI CCWGG 1 cut(s) 1288
AjuI GAANNNNNNNTTGG 2 cut(s) 973, 1005
Alw26I GTCTC 3 cut(s) 235, 401, 563
Ama87I CYCGRG 2 cut(s) 1007, 1196
AoxI GGCC 1 cut(s) 624
ApeKI GCWGC 7 cut(s) 469, 605, 656, 848, 963, 1022, 1099
AsiGI ACCGGT 1 cut(s) 880
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 2 cut(s) 1027, 1118
AsuHPI GGTGA 8 cut(s) 22, 77, 127, 831, 895, 1105, 1268, 1277
AvaI CYCGRG 2 cut(s) 1007, 1196
AxyI CCTNAGG 2 cut(s) 401, 780
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BalI TGGCCA 1 cut(s) 626
BauI CACGAG 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 1307
BbvI GCAGC 7 cut(s) 481, 592, 643, 860, 975, 1034, 1086
BccI CCATC 3 cut(s) 41, 188, 731
BceAI ACGGC 2 cut(s) 55, 644
BciT130I CCWGG 1 cut(s) 1290
BciVI GTATCC 1 cut(s) 113
BcoDI GTCTC 3 cut(s) 235, 401, 563
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 3 cut(s) 729, 1020, 1100
BfoI RGCGCY 1 cut(s) 1119
BfuI GTATCC 1 cut(s) 113
BisI GCNGC 9 cut(s) 470, 606, 609, 657, 849, 861, 964, 1023, 1100
BlsI GCNGC 9 cut(s) 471, 607, 610, 658, 850, 862, 965, 1024, 1101
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 1290
BmeT110I CYCGRG 2 cut(s) 1007, 1196
BmgBI CACGTC 1 cut(s) 522
BmiI GGNNCC 3 cut(s) 24, 178, 209
BmrFI CCNGG 1 cut(s) 1290
BmsI GCATC 2 cut(s) 150, 314
BpiI GAAGAC 1 cut(s) 1307
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 1 cut(s) 1154
BpuEI CTTGAG 2 cut(s) 473, 752
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 1 cut(s) 1280
BsaWI WCCGGW 5 cut(s) 358, 682, 841, 880, 1182
BsaXI ACNNNNNCTCC 2 cut(s) 1159, 1189
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse118I RCCGGY 2 cut(s) 137, 880
Bse21I CCTNAGG 2 cut(s) 401, 780
Bse3DI GCAATG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 1 cut(s) 1290
BseDI CCNNGG 1 cut(s) 1280
BseGI GGATG 3 cut(s) 742, 775, 1093
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 4 cut(s) 415, 794, 878, 903
BseRI GAGGAG 3 cut(s) 380, 389, 988
BseXI GCAGC 7 cut(s) 481, 592, 643, 860, 975, 1034, 1086
Bsh1236I CGCG 3 cut(s) 556, 860, 1027
BshFI GGCC 1 cut(s) 626
BshTI ACCGGT 1 cut(s) 880
BsiHKCI CYCGRG 2 cut(s) 1007, 1196
BsiSI CCGG 8 cut(s) 20, 138, 222, 359, 683, 842, 881, 1183
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 3 cut(s) 235, 401, 563
BsmBI CGTCTC 2 cut(s) 401, 563
BsnI GGCC 1 cut(s) 626
BsoBI CYCGRG 2 cut(s) 1007, 1196
Bsp143I GATC 2 cut(s) 214, 871
BspACI CCGC 5 cut(s) 234, 603, 608, 860, 1027
BspANI GGCC 1 cut(s) 626
BspCNI CTCAG 4 cut(s) 414, 793, 877, 904
BspFNI CGCG 3 cut(s) 556, 860, 1027
BspLI GGNNCC 3 cut(s) 24, 178, 209
BspMAI CTGCAG 2 cut(s) 1024, 1104
BspQI GCTCTTC 2 cut(s) 714, 858
BsrDI GCAATG 1 cut(s) 232
BsrFI RCCGGY 2 cut(s) 137, 880
BssAI RCCGGY 2 cut(s) 137, 880
BssECI CCNNGG 1 cut(s) 1280
BssMI GATC 2 cut(s) 214, 871
BssSI CACGAG 1 cut(s) 560
Bst2BI CACGAG 1 cut(s) 560
Bst2UI CCWGG 1 cut(s) 1290
Bst4CI ACNGT 4 cut(s) 324, 668, 944, 1209
Bst6I CTCTTC 4 cut(s) 714, 858, 1148, 1184
BstDEI CTNAG 6 cut(s) 256, 401, 780, 864, 912, 926
BstDSI CCRYGG 1 cut(s) 1280
BstF5I GGATG 3 cut(s) 742, 775, 1093
BstFNI CGCG 3 cut(s) 556, 860, 1027
BstH2I RGCGCY 1 cut(s) 1119
BstHHI GCGC 2 cut(s) 1027, 1118
BstKTI GATC 2 cut(s) 217, 874
BstMAI GTCTC 3 cut(s) 235, 401, 563
BstMBI GATC 2 cut(s) 214, 871
BstMWI GCNNNNNNNGC 8 cut(s) 194, 553, 656, 857, 922, 960, 1129, 1138
BstNI CCWGG 1 cut(s) 1290
BstSCI CCNGG 1 cut(s) 1288
BstSFI CTRYAG 3 cut(s) 729, 1020, 1100
BstUI CGCG 3 cut(s) 556, 860, 1027
BstV1I GCAGC 7 cut(s) 481, 592, 643, 860, 975, 1034, 1086
BstV2I GAAGAC 1 cut(s) 1307
Bsu36I CCTNAGG 2 cut(s) 401, 780
BsuI GTATCC 1 cut(s) 113
BsuRI GGCC 1 cut(s) 626
BtgI CCRYGG 1 cut(s) 1280
BtgZI GCGATG 1 cut(s) 169
BtrI CACGTC 1 cut(s) 522
BtsCI GGATG 3 cut(s) 742, 775, 1093
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 3 cut(s) 300, 909, 1115
CfoI GCGC 2 cut(s) 1027, 1118
Cfr10I RCCGGY 2 cut(s) 137, 880
CseI GACGC 3 cut(s) 286, 545, 562
Csp6I GTAC 5 cut(s) 76, 528, 726, 745, 1205
CspAI ACCGGT 1 cut(s) 880
CviAII CATG 2 cut(s) 112, 719
CviQI GTAC 5 cut(s) 76, 528, 726, 745, 1205
DdeI CTNAG 6 cut(s) 256, 401, 780, 864, 912, 926
DpnI GATC 2 cut(s) 216, 873
DpnII GATC 2 cut(s) 214, 871
EaeI YGGCCR 1 cut(s) 624
Eam1104I CTCTTC 4 cut(s) 714, 858, 1148, 1184
EarI CTCTTC 4 cut(s) 714, 858, 1148, 1184
EciI GGCGGA 1 cut(s) 223
Eco57I CTGAAG 2 cut(s) 496, 672
Eco81I CCTNAGG 2 cut(s) 401, 780
Eco88I CYCGRG 2 cut(s) 1007, 1196
EcoRII CCWGG 1 cut(s) 1288
EcoT22I ATGCAT 1 cut(s) 1125
Esp3I CGTCTC 2 cut(s) 401, 563
FaeI CATG 2 cut(s) 115, 722
FaiI YATR 9 cut(s) 71, 113, 500, 720, 763, 1121, 1145, 1298, 1352
FalI AAGNNNNNCTT 2 cut(s) 837, 869
FatI CATG 2 cut(s) 111, 718
FblI GTMKAC 1 cut(s) 814
Fnu4HI GCNGC 9 cut(s) 470, 606, 609, 657, 849, 861, 964, 1023, 1100
FokI GGATG 3 cut(s) 749, 762, 1100
Fsp4HI GCNGC 9 cut(s) 470, 606, 609, 657, 849, 861, 964, 1023, 1100
FspBI CTAG 1 cut(s) 714
GlaI GCGC 2 cut(s) 1026, 1117
GluI GCNGC 9 cut(s) 470, 606, 609, 657, 849, 861, 964, 1023, 1100
GsuI CTGGAG 1 cut(s) 1154
HaeII RGCGCY 1 cut(s) 1119
HaeIII GGCC 1 cut(s) 626
HapII CCGG 8 cut(s) 20, 138, 222, 359, 683, 842, 881, 1183
HgaI GACGC 3 cut(s) 286, 545, 562
HhaI GCGC 2 cut(s) 1027, 1118
Hin1II CATG 2 cut(s) 115, 722
Hin6I GCGC 2 cut(s) 1025, 1116
HinP1I GCGC 2 cut(s) 1025, 1116
HincII GTYRAC 2 cut(s) 637, 664
HindII GTYRAC 2 cut(s) 637, 664
HindIII AAGCTT 2 cut(s) 480, 629
HpaII CCGG 8 cut(s) 20, 138, 222, 359, 683, 842, 881, 1183
HphI GGTGA 8 cut(s) 22, 77, 127, 831, 895, 1105, 1268, 1277
Hpy166II GTNNAC 7 cut(s) 565, 637, 664, 815, 878, 909, 998
Hpy188I TCNGA 5 cut(s) 161, 347, 422, 432, 867
Hpy188III TCNNGA 3 cut(s) 403, 562, 576
Hpy8I GTNNAC 7 cut(s) 565, 637, 664, 815, 878, 909, 998
Hpy99I CGWCG 3 cut(s) 65, 95, 335
HpyAV CCTTC 8 cut(s) 67, 516, 520, 584, 796, 1068, 1262, 1341
HpyCH4III ACNGT 4 cut(s) 324, 668, 944, 1209
HpyCH4IV ACGT 2 cut(s) 521, 1042
HpyCH4V TGCA 5 cut(s) 305, 381, 1022, 1102, 1123
HpyF10VI GCNNNNNNNGC 8 cut(s) 194, 553, 656, 857, 922, 960, 1129, 1138
HpyF3I CTNAG 6 cut(s) 256, 401, 780, 864, 912, 926
HpySE526I ACGT 2 cut(s) 521, 1042
Hsp92II CATG 2 cut(s) 115, 722
HspAI GCGC 2 cut(s) 1025, 1116
Kzo9I GATC 2 cut(s) 214, 871
LguI GCTCTTC 2 cut(s) 714, 858
LmnI GCTCC 4 cut(s) 213, 422, 445, 493
Lsp1109I GCAGC 7 cut(s) 481, 592, 643, 860, 975, 1034, 1086
LweI GCATC 2 cut(s) 150, 314
MaeI CTAG 1 cut(s) 714
MaeII ACGT 2 cut(s) 521, 1042
MaeIII GTNAC 5 cut(s) 28, 298, 550, 932, 1256
MalI GATC 2 cut(s) 216, 873
MboI GATC 2 cut(s) 214, 871
MlsI TGGCCA 1 cut(s) 626
MluCI AATT 3 cut(s) 382, 433, 1212
MluI ACGCGT 1 cut(s) 554
MluNI TGGCCA 1 cut(s) 626
MlyI GAGTC 5 cut(s) 362, 632, 985, 1114, 1279
MmeI TCCRAC 2 cut(s) 400, 1004
Mox20I TGGCCA 1 cut(s) 626
Mph1103I ATGCAT 1 cut(s) 1125
MroXI GAANNNNTTC 1 cut(s) 119
MscI TGGCCA 1 cut(s) 626
MseI TTAA 5 cut(s) 440, 597, 618, 698, 1357
MslI CAYNNNNRTG 1 cut(s) 899
Msp20I TGGCCA 1 cut(s) 626
MspA1I CMGCKG 2 cut(s) 605, 1132
MspI CCGG 8 cut(s) 20, 138, 222, 359, 683, 842, 881, 1183
MspR9I CCNGG 1 cut(s) 1290
MvaI CCWGG 1 cut(s) 1290
MvnI CGCG 3 cut(s) 556, 860, 1027
MwoI GCNNNNNNNGC 8 cut(s) 194, 553, 656, 857, 922, 960, 1129, 1138
NdeII GATC 2 cut(s) 214, 871
NlaIII CATG 2 cut(s) 115, 722
NlaIV GGNNCC 3 cut(s) 24, 178, 209
NmuCI GTSAC 5 cut(s) 28, 298, 550, 932, 1256
NsiI ATGCAT 1 cut(s) 1125
PaeR7I CTCGAG 1 cut(s) 1007
PciSI GCTCTTC 2 cut(s) 714, 858
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 5 cut(s) 95, 156, 260, 348, 1250
PinAI ACCGGT 1 cut(s) 880
PkrI GCNGC 9 cut(s) 471, 607, 610, 658, 850, 862, 965, 1024, 1101
PleI GAGTC 5 cut(s) 362, 632, 984, 1113, 1279
PpsI GAGTC 5 cut(s) 362, 632, 984, 1113, 1279
Psp6I CCWGG 1 cut(s) 1288
PspGI CCWGG 1 cut(s) 1288
PspN4I GGNNCC 3 cut(s) 24, 178, 209
PspXI VCTCGAGB 1 cut(s) 1007
PstI CTGCAG 2 cut(s) 1024, 1104
PvuII CAGCTG 1 cut(s) 1132
RsaI GTAC 5 cut(s) 77, 529, 727, 746, 1206
RsaNI GTAC 5 cut(s) 76, 528, 726, 745, 1205
RseI CAYNNNNRTG 1 cut(s) 899
SapI GCTCTTC 2 cut(s) 714, 858
SaqAI TTAA 5 cut(s) 440, 597, 618, 698, 1357
SatI GCNGC 9 cut(s) 470, 606, 609, 657, 849, 861, 964, 1023, 1100
Sau3AI GATC 2 cut(s) 214, 871
ScaI AGTACT 1 cut(s) 77
SchI GAGTC 5 cut(s) 362, 632, 985, 1114, 1279
ScrFI CCNGG 1 cut(s) 1290
SfaNI GCATC 2 cut(s) 150, 314
SfcI CTRYAG 3 cut(s) 729, 1020, 1100
Sfr274I CTCGAG 1 cut(s) 1007
SlaI CTCGAG 1 cut(s) 1007
SmiMI CAYNNNNRTG 1 cut(s) 899
SmlI CTYRAG 3 cut(s) 488, 767, 1007
SmoI CTYRAG 3 cut(s) 488, 767, 1007
Sse9I AATT 3 cut(s) 382, 433, 1212
SsiI CCGC 5 cut(s) 234, 603, 608, 860, 1027
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 1 cut(s) 1288
TaaI ACNGT 4 cut(s) 324, 668, 944, 1209
TaiI ACGT 2 cut(s) 524, 1045
TaqI TCGA 5 cut(s) 90, 333, 474, 956, 1008
TasI AATT 3 cut(s) 382, 433, 1212
TatI WGTACW 1 cut(s) 75
TauI GCSGC 2 cut(s) 611, 863
TfiI GAWTC 5 cut(s) 95, 156, 260, 348, 1250
Tru1I TTAA 5 cut(s) 440, 597, 618, 698, 1357
Tru9I TTAA 5 cut(s) 440, 597, 618, 698, 1357
TscAI CASTG 3 cut(s) 307, 916, 1115
TseFI GTSAC 5 cut(s) 28, 298, 550, 932, 1256
TseI GCWGC 7 cut(s) 469, 605, 656, 848, 963, 1022, 1099
Tsp45I GTSAC 5 cut(s) 28, 298, 550, 932, 1256
TspDTI ATGAA 5 cut(s) 17, 128, 329, 1064, 1313
TspGWI ACGGA 3 cut(s) 383, 458, 1297
TspRI CASTG 3 cut(s) 307, 916, 1115
XhoI CTCGAG 1 cut(s) 1007
XmiI GTMKAC 1 cut(s) 814
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 1 cut(s) 714
ZrmI AGTACT 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.