AT1G54500

Rubredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014452
Physical Location & Seq
Reverse (-)
20356954 .. 20357879
926 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54500.1

Sequence Viewer

Length: 588 bp
ATGGCGAGTGCTACCTTCTCCTTCTGTCCCCTCTCTCAATCCCATCCCCATTCTTCTCTAATCAAACCGACACCGTTTCTCAGATATGGCAAGAAACTACACCATCTTCACCACCACATCTTCATCACCATCTCTTACCCATCTCACCATTCTCGCTACTTGGCCGTTTCAAGAGACGATGCCGCGACGCCTCTTTCTTCTTCCGACCAAACCCAAGAGACAGAGACCAAAGAAGTGGAAGACACTATAGAGAAACGAAGAATGGAGGAGAAGTTTGCTGTTCTAAACACTGGAATCTATGAGTGTAGATCATGTGGTTACAAGTACGATGAATCAGCGGGTGACCCATCGTACCCGATTCCACCGGGTTTTCAGTTTGATAAGTTGCCTGAAGATTGGAGATGTCCTACTTGTGGAGCTGCTCAGAGTTTCTTTGAGAGTAAAATGGTTGAGATTGCTGGTTTTGCTCAGAATCAGCAATATGGACTTGGTGGTAATGCTCTTACCTCTGGTCAGAAGACTGGTTTAATCTTTGGCTCTCTTTTACTCTTCTTTGCGCTTTTTTTGAGTGGCTATTTCATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubredoxin

Protein Analysis

195

Amino Acids

21.87

Weight (kDa)

6.29

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubredoxin PF00301 100 - 145 2.1e-17 Rubredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014452)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54500
fragaria_vesca FvH4_6g03680
malus_domestica MD04G1219300.v1.1 MD12G1236300.v1.1
prunus_persica Prupe.6G338600_v2.0.a1
pyrus_communis pycom04g19460
rosa_chinensis RchiOBHm_Chr3g0452211
rosa_laevigata RLG00000025616
rosa_multiflora Rmu_co8379055.1_g000001
rosa_roxburghii Rroxscaffold_164G00435940 Rroxscaffold_6G00429360
rosa_rugosa Rorug02G0639300
rosa_samantha Rh3AG041200 Rh3BG042900 Rh3CG041300 Rh3DG042200
rosa_wichuraiana Rw3G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 185
AciI CCGC 2 cut(s) 183, 338
AcoI YGGCCR 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 188
AfaI GTAC 2 cut(s) 326, 353
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 2 cut(s) 171, 584
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
Alw26I GTCTC 3 cut(s) 168, 212, 218
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 419
AspLEI GCGC 1 cut(s) 559
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 4 cut(s) 101, 118, 137, 353
BbsI GAAGAC 2 cut(s) 246, 524
BbvI GCAGC 1 cut(s) 406
BccI CCATC 5 cut(s) 51, 111, 137, 148, 355
BceAI ACGGC 1 cut(s) 149
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 3 cut(s) 168, 212, 218
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 2 cut(s) 183, 420
BlsI GCNGC 2 cut(s) 184, 421
Bme1390I CCNGG 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 2 cut(s) 246, 524
BpuMI CCSGG 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse1I ACTGG 2 cut(s) 295, 526
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 3 cut(s) 94, 437, 482
BseNI ACTGG 2 cut(s) 295, 526
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 3 cut(s) 168, 212, 218
BsmBI CGTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 308
BspACI CCGC 2 cut(s) 183, 338
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 3 cut(s) 93, 436, 481
BspFNI CGCG 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 218
BsrI ACTGG 2 cut(s) 295, 526
BssMI GATC 1 cut(s) 308
BssNI GRCGYC 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 554
BstACI GRCGYC 1 cut(s) 188
BstDEI CTNAG 3 cut(s) 80, 423, 468
BstEII GGTNACC 1 cut(s) 341
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 185
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 1 cut(s) 311
BstMAI GTCTC 3 cut(s) 168, 212, 218
BstMBI GATC 1 cut(s) 308
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstPI GGTNACC 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 406
BstV2I GAAGAC 2 cut(s) 246, 524
BstXI CCANNNNNNTGG 1 cut(s) 235
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 288
CfoI GCGC 1 cut(s) 559
CseI GACGC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 325, 352
CviAII CATG 1 cut(s) 312
CviJI RGCY 4 cut(s) 164, 419, 537, 573
CviKI_1 RGCY 4 cut(s) 164, 419, 537, 573
CviQI GTAC 2 cut(s) 325, 352
DdeI CTNAG 3 cut(s) 80, 423, 468
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
Eco31I GGTCTC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 411
Eco91I GGTNACC 1 cut(s) 341
EcoO65I GGTNACC 1 cut(s) 341
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 1 cut(s) 315
FaiI YATR 5 cut(s) 87, 248, 300, 313, 483
FaqI GGGAC 1 cut(s) 12
FatI CATG 1 cut(s) 311
FauI CCCGC 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 183, 420
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 183, 420
GlaI GCGC 1 cut(s) 558
GluI GCNGC 2 cut(s) 183, 420
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 365
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 559
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 1 cut(s) 315
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HinfI GANTC 4 cut(s) 294, 332, 358, 472
HpaII CCGG 1 cut(s) 365
HphI GGTGA 4 cut(s) 101, 118, 137, 353
Hpy188I TCNGA 5 cut(s) 83, 205, 426, 471, 516
Hpy188III TCNNGA 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 25, 31
HpyCH4III ACNGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 3 cut(s) 80, 423, 468
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 1 cut(s) 315
HspAI GCGC 1 cut(s) 557
Kzo9I GATC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 6 cut(s) 276, 378, 402, 444, 495, 507
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 317, 341
MalI GATC 1 cut(s) 310
MboI GATC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 4 cut(s) 41, 201, 259, 517
MseI TTAA 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 464
NciI CCSGG 1 cut(s) 366
NdeII GATC 1 cut(s) 308
NlaIII CATG 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 341
PfeI GAWTC 4 cut(s) 294, 332, 358, 472
PkrI GCNGC 2 cut(s) 184, 421
PspEI GGTNACC 1 cut(s) 341
RsaI GTAC 2 cut(s) 326, 353
RsaNI GTAC 2 cut(s) 325, 352
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 2 cut(s) 183, 420
Sau3AI GATC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 366
SetI ASST 3 cut(s) 17, 421, 509
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 246
SsiI CCGC 2 cut(s) 183, 338
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 75
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 4 cut(s) 294, 332, 358, 472
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 419
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 112, 345, 568
TspRI CASTG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.