FvH4_6g03680

Rubredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014452
Physical Location & Seq
Forward (+)
2000374 .. 2001711
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03680.t1

Sequence Viewer

Length: 594 bp
ATGGCTTGTGCAACAACAAGACCCACCTTCTCTTTTCACCTCTCCACCACTTTCCCCCAATCCTCTCACCCAAAACCCAAAACCCAATTCCTCCCCAAGATCCCAACCATCTCATTGTCACTTACTCACAAGGCGTCCCGCAAATTGACCATTACTAACTCCATTGATGTCTCCAATGAAGATAAACCAACTTCAGACCAGCCCACTCCACCCTCTATAGACTCCACAGACTCAGAAGAAGCAGAATCAAAGATCGATAAGCGGCGGCTTGAGGAGAAGTTTGCAGTGCTGAACACTGGGATATATGAATGCAGGTCTTGTGGGTACAAGTATGATGAGGCTGTGGGTGACCCATCATACCCATTACCACCAGGAATGCAATTTGAGAAGCTTCCAGAGGATTGGAGGTGCCCAACTTGTGGGGCAGCACAGAGCTTCTTTGTGAGCAAGAGTGTGGAGATTGCTGGGTTTGCTGAGAACCAGCAGTTTGGGCTTGGTGGGAATTCACTCACTTCTGGGCAGAAGGCTCTGCTCATATTTGGGAGCTTGTTCCTTTTCTTTGCTCTTTTCTTGTCTGGATATTTTCTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubredoxin

Protein Analysis

198

Amino Acids

21.74

Weight (kDa)

5.93

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubredoxin PF00301 102 - 147 7.6e-18 Rubredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014452)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54500
fragaria_vesca FvH4_6g03680
malus_domestica MD04G1219300.v1.1 MD12G1236300.v1.1
prunus_persica Prupe.6G338600_v2.0.a1
pyrus_communis pycom04g19460
rosa_chinensis RchiOBHm_Chr3g0452211
rosa_laevigata RLG00000025616
rosa_multiflora Rmu_co8379055.1_g000001
rosa_roxburghii Rroxscaffold_164G00435940 Rroxscaffold_6G00429360
rosa_rugosa Rorug02G0639300
rosa_samantha Rh3AG041200 Rh3BG042900 Rh3CG041300 Rh3DG042200
rosa_wichuraiana Rw3G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 303
AccB1I GGYRCC 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 419
AciI CCGC 3 cut(s) 139, 262, 265
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 419
AjnI CCWGG 1 cut(s) 370
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 3 cut(s) 391, 435, 546
AluI AGCT 3 cut(s) 391, 435, 546
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 502
AsuHPI GGTGA 3 cut(s) 29, 59, 359
BaeGI GKGCMC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 437
BccI CCATC 2 cut(s) 116, 361
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 175
BfmI CTRYAG 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 303
BisI GCNGC 3 cut(s) 263, 266, 426
BlsI GCNGC 3 cut(s) 264, 267, 427
Bme1390I CCNGG 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 372
BmrI ACTGGG 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 290
Bsa29I ATCGAT 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 372
BseCI ATCGAT 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 2 cut(s) 246, 465
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 1 cut(s) 437
BseYI CCCAGC 1 cut(s) 464
BshNI GGYRCC 1 cut(s) 408
BshVI ATCGAT 1 cut(s) 255
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 2 cut(s) 314, 381
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 99, 252
BspACI CCGC 3 cut(s) 139, 262, 265
BspCNI CTCAG 2 cut(s) 245, 466
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 410
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 408
BsrI ACTGG 1 cut(s) 301
BssMI GATC 2 cut(s) 99, 252
BssNI GRCGYC 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 232, 474
BstEII GGTNACC 1 cut(s) 347
BstKTI GATC 2 cut(s) 102, 255
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 2 cut(s) 99, 252
BstMWI GCNNNNNNNGC 2 cut(s) 470, 490
BstNI CCWGG 1 cut(s) 372
BstPI GGTNACC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 1 cut(s) 437
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 2 cut(s) 402, 488
BstYI RGATCY 1 cut(s) 99
Bsu15I ATCGAT 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 291, 294
BveI ACCTGC 1 cut(s) 303
ClaI ATCGAT 1 cut(s) 255
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 325
CviJI RGCY 9 cut(s) 5, 202, 268, 341, 391, 435, 493, 527, 546
CviKI_1 RGCY 9 cut(s) 5, 202, 268, 341, 391, 435, 493, 527, 546
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 2 cut(s) 232, 474
DpnI GATC 2 cut(s) 101, 254
DpnII GATC 2 cut(s) 99, 252
Eco57I CTGAAG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 370
FaiI YATR 6 cut(s) 218, 304, 306, 333, 358, 536
FaqI GGGAC 1 cut(s) 121
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 3 cut(s) 263, 266, 426
Fsp4HI GCNGC 3 cut(s) 263, 266, 426
GluI GCNGC 3 cut(s) 263, 266, 426
GsaI CCCAGC 1 cut(s) 468
HgaI GACGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 3 cut(s) 221, 230, 245
HphI GGTGA 3 cut(s) 29, 59, 359
Hpy188I TCNGA 2 cut(s) 196, 235
Hpy188III TCNNGA 2 cut(s) 395, 576
HpyAV CCTTC 2 cut(s) 37, 517
HpyCH4V TGCA 5 cut(s) 11, 284, 312, 379, 589
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 490
HpyF3I CTNAG 2 cut(s) 232, 474
Hsp92I GRCGYC 1 cut(s) 134
Kzo9I GATC 2 cut(s) 99, 252
LmnI GCTCC 1 cut(s) 543
Lsp1109I GCAGC 1 cut(s) 437
MaeIII GTNAC 2 cut(s) 117, 347
MalI GATC 2 cut(s) 101, 254
MboI GATC 2 cut(s) 99, 252
MboII GAAGA 2 cut(s) 191, 248
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 4 cut(s) 86, 143, 380, 502
MlyI GAGTC 2 cut(s) 215, 224
MnlI CCTC 8 cut(s) 50, 73, 101, 223, 265, 331, 391, 399
MspR9I CCNGG 1 cut(s) 372
Mva1269I GAATGC 2 cut(s) 314, 381
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 470, 490
NdeII GATC 2 cut(s) 99, 252
NlaIV GGNNCC 1 cut(s) 410
NmuCI GTSAC 2 cut(s) 117, 347
PctI GAATGC 2 cut(s) 314, 381
PfeI GAWTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 419
PkrI GCNGC 3 cut(s) 264, 267, 427
PleI GAGTC 2 cut(s) 215, 224
PpsI GAGTC 2 cut(s) 215, 224
Psp6I CCWGG 1 cut(s) 370
PspEI GGTNACC 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 410
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SatI GCNGC 3 cut(s) 263, 266, 426
Sau3AI GATC 2 cut(s) 99, 252
SchI GAGTC 2 cut(s) 215, 224
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 1 cut(s) 413
SetI ASST 7 cut(s) 29, 42, 317, 393, 410, 437, 548
SfcI CTRYAG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 4 cut(s) 86, 143, 380, 502
SsiI CCGC 3 cut(s) 139, 262, 265
StyD4I CCNGG 1 cut(s) 370
TaqI TCGA 1 cut(s) 255
TasI AATT 4 cut(s) 86, 143, 380, 502
TauI GCSGC 2 cut(s) 265, 268
TfiI GAWTC 1 cut(s) 245
TscAI CASTG 2 cut(s) 291, 301
TseFI GTSAC 2 cut(s) 117, 347
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 2 cut(s) 117, 347
TspDTI ATGAA 2 cut(s) 192, 321
TspRI CASTG 2 cut(s) 291, 301
Van91I CCANNNNNTGG 1 cut(s) 419
XapI RAATTY 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.