MD04G1219300.v1.1

Rubredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0014452
Physical Location & Seq
Reverse (-)
30121279 .. 30121938
660 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1219300.v1.1.491

Sequence Viewer

Length: 660 bp
ATGGCTTGTGCAACAACAAGACCCACCTTTTCTTTCCACCTGTCAACCACTTTCCCCCAACATTCCCACCCAAAATCCAAAACCCTATTCCCCAATCCCCCCTTCCTCCCAAAGATCCAAACTGTTTCCCTCTCCCTCACTCACACCTCCCCAAAACCCATCAAGTTGTCTGCAAACTCCATTGACGTCTCGAAGGAAGACAAAAACTCCATTGATGTGTCAAAGGAGGACAAACCCACTTCAGACGAACCCACATCGCCCCCTCCCACGTCCTCCGTAGACCCACCAGAGCCTGTGCCGGAGGAACTCGAAACGACGTTCGACAAGCGGCGGCTGGAGGAGAAGTTTGCGGTGTTGAACACTGGGGTGTACGAATGCAGGTCCTGTGGGTACAAATACGACGAGGCGGTGGGTGACCCGTCGTATCCCGTGCCGCCGGGATTGCCGTTTGATAAGTTGCCGGAGGATTGGAGGTGTCCGACGTGCGGGGCGGCGCAGGGGTTCTTTGTGAGCAAGAGTGTGGAGATTGCTGGGTTTGCGCAGAACCAGCAGTTCGGGCTGGGCGGGAACACGCTCACTTCTGGGCAGAAGGCTGTGCTCATATTTGGGGGACTCTTCCTTTTCTTCGTGCTTTTCTTATCCGGGTATTTTCTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubredoxin

Protein Analysis

220

Amino Acids

24.01

Weight (kDa)

5.59

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubredoxin PF00301 124 - 167 2.4e-17 Rubredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014452)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54500
fragaria_vesca FvH4_6g03680
malus_domestica MD04G1219300.v1.1 MD12G1236300.v1.1
prunus_persica Prupe.6G338600_v2.0.a1
pyrus_communis pycom04g19460
rosa_chinensis RchiOBHm_Chr3g0452211
rosa_laevigata RLG00000025616
rosa_multiflora Rmu_co8379055.1_g000001
rosa_roxburghii Rroxscaffold_164G00435940 Rroxscaffold_6G00429360
rosa_rugosa Rorug02G0639300
rosa_samantha Rh3AG041200 Rh3BG042900 Rh3CG041300 Rh3DG042200
rosa_wichuraiana Rw3G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
Acc16I TGCGCA 1 cut(s) 540
Acc36I ACCTGC 1 cut(s) 369
AccI GTMKAC 1 cut(s) 279
AciI CCGC 8 cut(s) 328, 331, 350, 407, 434, 486, 491, 564
AclWI GGATC 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 2 cut(s) 371, 392
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 1 cut(s) 358
AjiI CACGTC 2 cut(s) 270, 483
AjuI GAANNNNNNNTTGG 4 cut(s) 71, 86, 103, 118
AleI CACNNNNGTG 1 cut(s) 365
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 1 cut(s) 109
AlwNI CAGNNNCTG 2 cut(s) 293, 384
AspLEI GCGC 2 cut(s) 496, 541
AspS9I GGNCC 1 cut(s) 381
AsuC2I CCSGG 2 cut(s) 438, 643
AsuHPI GGTGA 1 cut(s) 425
AvaII GGWCC 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 600
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 430
BciVI GTATCC 1 cut(s) 435
BcnI CCSGG 2 cut(s) 438, 643
BcoDI GTCTC 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 369
BfuI GTATCC 1 cut(s) 435
BisI GCNGC 4 cut(s) 329, 332, 434, 492
BlsI GCNGC 4 cut(s) 330, 333, 435, 493
Bme1390I CCNGG 2 cut(s) 438, 643
Bme18I GGWCC 1 cut(s) 381
BmgBI CACGTC 2 cut(s) 270, 483
BmgT120I GGNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 438, 643
BmrI ACTGGG 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 356
BpuMI CCSGG 2 cut(s) 438, 643
BsaHI GRCGYC 1 cut(s) 186
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 329, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 353
BseYI CCCAGC 2 cut(s) 530, 559
BsiHKAI GWGCWC 1 cut(s) 600
BsiSI CCGG 4 cut(s) 299, 437, 461, 642
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 193
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 624
BsmI GAATGC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 8 cut(s) 328, 331, 350, 407, 434, 486, 491, 564
BspMI ACCTGC 1 cut(s) 369
BspPI GGATC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 367
BssMI GATC 1 cut(s) 114
BssNI GRCGYC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 620
BstACI GRCGYC 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 413
BstHHI GCGC 2 cut(s) 496, 541
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 4 cut(s) 442, 536, 547, 556
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 436, 641
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
BsuI GTATCC 1 cut(s) 435
BtgZI GCGATG 1 cut(s) 240
BtrI CACGTC 2 cut(s) 270, 483
BtsIMutI CAGTG 1 cut(s) 360
BveI ACCTGC 1 cut(s) 369
CaiI CAGNNNCTG 2 cut(s) 293, 384
CfoI GCGC 2 cut(s) 496, 541
Cfr13I GGNCC 1 cut(s) 381
Csp6I GTAC 2 cut(s) 370, 391
CviJI RGCY 5 cut(s) 5, 292, 334, 559, 593
CviKI_1 RGCY 5 cut(s) 5, 292, 334, 559, 593
CviQI GTAC 2 cut(s) 370, 391
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 225
Eco91I GGTNACC 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 381
EcoO65I GGTNACC 1 cut(s) 413
Esp3I CGTCTC 1 cut(s) 193
FaiI YATR 1 cut(s) 602
FaqI GGGAC 1 cut(s) 624
FauI CCCGC 2 cut(s) 479, 557
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 4 cut(s) 329, 332, 434, 492
Fsp4HI GCNGC 4 cut(s) 329, 332, 434, 492
FspI TGCGCA 1 cut(s) 540
GlaI GCGC 2 cut(s) 495, 540
GluI GCNGC 4 cut(s) 329, 332, 434, 492
GsaI CCCAGC 2 cut(s) 534, 563
GsuI CTGGAG 1 cut(s) 356
HapII CCGG 4 cut(s) 299, 437, 461, 642
HhaI GCGC 2 cut(s) 496, 541
Hin1I GRCGYC 1 cut(s) 186
Hin6I GCGC 2 cut(s) 494, 539
HinP1I GCGC 2 cut(s) 494, 539
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 1 cut(s) 612
HpaII CCGG 4 cut(s) 299, 437, 461, 642
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 3 cut(s) 45, 280, 370
Hpy188I TCNGA 2 cut(s) 244, 480
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 3 cut(s) 45, 280, 370
Hpy99I CGWCG 4 cut(s) 319, 404, 424, 484
HpyAV CCTTC 3 cut(s) 112, 187, 583
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 4 cut(s) 186, 269, 317, 482
HpyCH4V TGCA 4 cut(s) 11, 173, 378, 655
HpyF10VI GCNNNNNNNGC 4 cut(s) 442, 536, 547, 556
HpySE526I ACGT 4 cut(s) 186, 269, 317, 482
Hsp92I GRCGYC 1 cut(s) 186
HspAI GCGC 2 cut(s) 494, 539
Kzo9I GATC 1 cut(s) 114
MaeII ACGT 4 cut(s) 186, 269, 317, 482
MaeIII GTNAC 1 cut(s) 413
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 3 cut(s) 209, 607, 616
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 600
MlyI GAGTC 1 cut(s) 606
MmeI TCCRAC 1 cut(s) 503
MslI CAYNNNNRTG 2 cut(s) 215, 365
MspI CCGG 4 cut(s) 299, 437, 461, 642
MspR9I CCNGG 2 cut(s) 438, 643
Mva1269I GAATGC 1 cut(s) 380
MwoI GCNNNNNNNGC 4 cut(s) 442, 536, 547, 556
NciI CCSGG 2 cut(s) 438, 643
NdeII GATC 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 413
NsbI TGCGCA 1 cut(s) 540
OliI CACNNNNGTG 1 cut(s) 365
PctI GAATGC 1 cut(s) 380
PkrI GCNGC 4 cut(s) 330, 333, 435, 493
PleI GAGTC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 606
PpuMI RGGWCCY 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 381
PspEI GGTNACC 1 cut(s) 413
PspFI CCCAGC 2 cut(s) 530, 559
PspPI GGNCC 1 cut(s) 381
PspPPI RGGWCCY 1 cut(s) 381
PstNI CAGNNNCTG 2 cut(s) 293, 384
PsuI RGATCY 1 cut(s) 114
RsaI GTAC 2 cut(s) 371, 392
RsaNI GTAC 2 cut(s) 370, 391
RseI CAYNNNNRTG 2 cut(s) 215, 365
SatI GCNGC 4 cut(s) 329, 332, 434, 492
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 381
SchI GAGTC 1 cut(s) 606
ScrFI CCNGG 2 cut(s) 438, 643
SduI GDGCHC 1 cut(s) 600
SetI ASST 9 cut(s) 29, 42, 149, 189, 272, 320, 383, 476, 485
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 2 cut(s) 215, 365
SsiI CCGC 8 cut(s) 328, 331, 350, 407, 434, 486, 491, 564
StyD4I CCNGG 2 cut(s) 436, 641
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 4 cut(s) 189, 272, 320, 485
TaqI TCGA 3 cut(s) 191, 309, 321
TauI GCSGC 4 cut(s) 331, 334, 436, 494
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 381
XmiI GTMKAC 1 cut(s) 279
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.