Prupe.6G338600_v2.0.a1

Rubredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014452
Physical Location & Seq
Reverse (-)
29355437 .. 29356072
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G338600.1

Sequence Viewer

Length: 636 bp
ATGGCTTGTGCAACAACAAGACCCACCTTCTCTTTCCACCTCTCAACCTCTTTTTCCCAACATTCTCATCCAAAACCCAAAACCCAATTCACAAACCCAACTCTCCTTCCCAAGATCCCAAGCATTTCACTCTCACTTACTCACAAGCCCCATAAACCAAACAATTTGACTACAAACTCCATTGATGTCTCTAAAGAGGATAAACCAACATCAGATGAGCCTGCTTCTCCTCCTCCCACCTCCTATATAGAGCCAGAGCCAGAGCCAGAACAAGAAGAAGCAGCAGAAACAACATTTGATAAGCGCAGGCTTGAAGAGAAGTTTGCAGTTTTGAATACAGGGATATATGAATGCAGGTCTTGTGGGTACAAATATGATGAGGCAGTGGGAGACCCATCATATCCAATCCCACCAGGATTGCAATTTGATAAGTTACCTGAGGATTGGAGGTGCCCAACATGTGGGGCTGCACAGAGCTTCTTTGTGAGTAAGAGTGTGGAAATAGCTGGGTTTGCTCAGAACCAGCAGTTTGGGCTTGGTGGAAATGCACTGACTTCTGGCCAGAAGGCTGTGCTCATATTTGGGGGCTTGTTCCTTTTCTTTGTGCTTTTCTTGTCTGGCTATTTTCTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubredoxin

Protein Analysis

212

Amino Acids

23.3

Weight (kDa)

5.54

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014452)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54500
fragaria_vesca FvH4_6g03680
malus_domestica MD04G1219300.v1.1 MD12G1236300.v1.1
prunus_persica Prupe.6G338600_v2.0.a1
pyrus_communis pycom04g19460
rosa_chinensis RchiOBHm_Chr3g0452211
rosa_laevigata RLG00000025616
rosa_multiflora Rmu_co8379055.1_g000001
rosa_roxburghii Rroxscaffold_164G00435940 Rroxscaffold_6G00429360
rosa_rugosa Rorug02G0639300
rosa_samantha Rh3AG041200 Rh3BG042900 Rh3CG041300 Rh3DG042200
rosa_wichuraiana Rw3G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 450
AccB7I CCANNNNNTGG 1 cut(s) 461
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 559
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 461
AflIII ACRYGT 1 cut(s) 458
AgsI TTSAA 2 cut(s) 314, 334
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 2 cut(s) 477, 506
AluI AGCT 2 cut(s) 477, 506
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 2 cut(s) 193, 384
AlwI GGATC 1 cut(s) 109
AoxI GGCC 1 cut(s) 559
ApeKI GCWGC 2 cut(s) 281, 467
AspLEI GCGC 1 cut(s) 306
AxyI CCTNAGG 1 cut(s) 438
BaeGI GKGCMC 1 cut(s) 455
BalI TGGCCA 1 cut(s) 561
BanI GGYRCC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 293, 454
BccI CCATC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 193, 384
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 2 cut(s) 282, 468
BlsI GCNGC 2 cut(s) 283, 469
Bme1390I CCNGG 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 452
BmrFI CCNGG 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse21I CCTNAGG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 414
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMII CTCAG 2 cut(s) 429, 530
BseRI GAGGAG 2 cut(s) 219, 222
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 2 cut(s) 293, 454
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 1 cut(s) 561
BshNI GGYRCC 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 576
BslI CCNNNNNNNGG 1 cut(s) 461
BsmAI GTCTC 2 cut(s) 193, 384
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 1 cut(s) 561
Bso31I GGTCTC 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 455, 576
Bsp143I GATC 1 cut(s) 114
BspANI GGCC 1 cut(s) 561
BspCNI CTCAG 2 cut(s) 430, 529
BspLI GGNNCC 1 cut(s) 452
BspMI ACCTGC 1 cut(s) 345
BspPI GGATC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 450
BspTNI GGTCTC 1 cut(s) 384
BssMI GATC 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 414
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 222, 308
BstDEI CTNAG 2 cut(s) 438, 516
BstF5I GGATG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 2 cut(s) 193, 384
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 512, 532
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 412
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 2 cut(s) 293, 454
BstX2I RGATCY 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 530
BstYI RGATCY 1 cut(s) 114
Bsu36I CCTNAGG 1 cut(s) 438
BsuRI GGCC 1 cut(s) 561
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 2 cut(s) 390, 548
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 222, 308
CfoI GCGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 367
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviAII CATG 1 cut(s) 459
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 438, 516
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 384
Eco81I CCTNAGG 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 412
FaeI CATG 1 cut(s) 462
FaiI YATR 9 cut(s) 153, 246, 248, 346, 348, 375, 400, 460, 578
FatI CATG 1 cut(s) 458
Fnu4HI GCNGC 2 cut(s) 282, 468
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 282, 468
GlaI GCGC 1 cut(s) 305
GluI GCNGC 2 cut(s) 282, 468
GsaI CCCAGC 1 cut(s) 510
HaeIII GGCC 1 cut(s) 561
HhaI GCGC 1 cut(s) 306
Hin1II CATG 1 cut(s) 462
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 214, 519
HpyAV CCTTC 3 cut(s) 37, 116, 559
HpyCH4V TGCA 7 cut(s) 11, 326, 354, 421, 470, 548, 631
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 532
HpyF3I CTNAG 2 cut(s) 438, 516
Hsp92II CATG 1 cut(s) 462
HspAI GCGC 1 cut(s) 304
Kzo9I GATC 1 cut(s) 114
Lsp1109I GCAGC 2 cut(s) 293, 454
MaeIII GTNAC 1 cut(s) 432
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 2 cut(s) 287, 326
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 2 cut(s) 455, 576
MlsI TGGCCA 1 cut(s) 561
MluCI AATT 3 cut(s) 86, 163, 422
MluNI TGGCCA 1 cut(s) 561
MnlI CCTC 9 cut(s) 50, 58, 190, 240, 243, 250, 373, 433, 441
Mox20I TGGCCA 1 cut(s) 561
MscI TGGCCA 1 cut(s) 561
Msp20I TGGCCA 1 cut(s) 561
MspR9I CCNGG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 512, 532
NdeII GATC 1 cut(s) 114
NlaIII CATG 1 cut(s) 462
NlaIV GGNNCC 1 cut(s) 452
NspI RCATGY 1 cut(s) 462
PciI ACATGT 1 cut(s) 458
PctI GAATGC 1 cut(s) 356
PflMI CCANNNNNTGG 1 cut(s) 461
PkrI GCNGC 2 cut(s) 283, 469
PscI ACATGT 1 cut(s) 458
Psp6I CCWGG 1 cut(s) 412
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 452
PsuI RGATCY 1 cut(s) 114
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SatI GCNGC 2 cut(s) 282, 468
Sau3AI GATC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 2 cut(s) 455, 576
SetI ASST 9 cut(s) 29, 42, 50, 242, 359, 439, 452, 479, 508
Sse9I AATT 3 cut(s) 86, 163, 422
StyD4I CCNGG 1 cut(s) 412
TasI AATT 3 cut(s) 86, 163, 422
TscAI CASTG 2 cut(s) 390, 555
TseI GCWGC 2 cut(s) 281, 467
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 2 cut(s) 390, 555
Van91I CCANNNNNTGG 1 cut(s) 461
XceI RCATGY 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.