MD12G1236300.v1.1

Rubredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0014452
Physical Location & Seq
Reverse (-)
31036797 .. 31037420
624 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1236300.v1.1.491

Sequence Viewer

Length: 624 bp
ATGGCTTGCGCGACAAGACCCACCTTTTCTTTCCACCTCTCAATCACTTTCCCGCAACATTCCCACCCAAAGCCCAGAACCCAATTCCCTTATCCCCACCTCCTCCCAAAGGTCCAAACTTTTTCACTCTCTCTCACTCACATCCCCCCAAAACCCCACAAATTGTCTGCAAACTCCATTGATGTCTCCAAGGAAGACAAACCCACTTCAGAAGAACCCACCTCGCCCCCTCCCGCCTCCTCCGTGGACCCAGTAGAGCCGGCGGAGGAACTCGAAACGAAGTTCGACAAGCGGCGGCTGGAGGAGAAGTTTGCTGTGTTGAACACTGGGGTGTACGAATGCAGGTCTTGTGGGTACAAATACGACGAGGCGATGGGTGACCCGTCGTACCCGGTGCCGCCGGGATTGCCGTTTGATAAGTTGCCGGAGGATTGGAGGTGTCCGACGTGCGGGGCGGCGCAGGGGTTCTTTGTGAGCAAGAGTGTGGAGATTGCTGGGTTTGCGCAGAACCAGCAGTTTGGGCTGGGTGGGAATACGCTCACTTCTGGGCAGAAGGCTGTGCTCATATTTGGGGGACTCTTCCTTTTCTTTGTGCTTTTCTTATCCGGGTATTTTCTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubredoxin

Protein Analysis

208

Amino Acids

22.92

Weight (kDa)

6.3

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubredoxin PF00301 112 - 155 3.6e-17 Rubredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014452)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54500
fragaria_vesca FvH4_6g03680
malus_domestica MD04G1219300.v1.1 MD12G1236300.v1.1
prunus_persica Prupe.6G338600_v2.0.a1
pyrus_communis pycom04g19460
rosa_chinensis RchiOBHm_Chr3g0452211
rosa_laevigata RLG00000025616
rosa_multiflora Rmu_co8379055.1_g000001
rosa_roxburghii Rroxscaffold_164G00435940 Rroxscaffold_6G00429360
rosa_rugosa Rorug02G0639300
rosa_samantha Rh3AG041200 Rh3BG042900 Rh3CG041300 Rh3DG042200
rosa_wichuraiana Rw3G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 394
AccII CGCG 1 cut(s) 11
AciI CCGC 8 cut(s) 53, 234, 263, 292, 295, 398, 450, 455
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 3 cut(s) 335, 356, 389
AfiI CCNNNNNNNGG 2 cut(s) 109, 449
AgsI TTSAA 1 cut(s) 322
AjiI CACGTC 1 cut(s) 447
AleI CACNNNNGTG 1 cut(s) 329
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 1 cut(s) 190
AspLEI GCGC 3 cut(s) 11, 460, 505
AspS9I GGNCC 2 cut(s) 112, 247
AsuC2I CCSGG 3 cut(s) 392, 402, 607
AsuHPI GGTGA 1 cut(s) 389
AvaII GGWCC 2 cut(s) 112, 247
BanI GGYRCC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 564
BccI CCATC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 394
BcnI CCSGG 3 cut(s) 392, 402, 607
BcoDI GTCTC 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 333
BisI GCNGC 4 cut(s) 293, 296, 398, 456
BlsI GCNGC 4 cut(s) 294, 297, 399, 457
Bme1390I CCNGG 3 cut(s) 392, 402, 607
Bme18I GGWCC 2 cut(s) 112, 247
BmgBI CACGTC 1 cut(s) 447
BmgT120I GGNCC 2 cut(s) 112, 247
BmiI GGNNCC 2 cut(s) 249, 396
BmrFI CCNGG 3 cut(s) 392, 402, 607
BmrI ACTGGG 2 cut(s) 245, 336
BmuI ACTGGG 2 cut(s) 245, 336
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 320
BpuMI CCSGG 3 cut(s) 392, 402, 607
BsaJI CCNNGG 2 cut(s) 189, 243
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 449
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 251, 331
BseDI CCNNGG 2 cut(s) 189, 243
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 109, 449
BseNI ACTGG 2 cut(s) 251, 331
BseRI GAGGAG 3 cut(s) 92, 229, 317
BseYI CCCAGC 2 cut(s) 494, 523
Bsh1236I CGCG 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 564
BsiSI CCGG 5 cut(s) 260, 392, 401, 425, 606
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 2 cut(s) 109, 449
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 588
BsmI GAATGC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 564
BspACI CCGC 8 cut(s) 53, 234, 263, 292, 295, 398, 450, 455
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 249, 396
BspMI ACCTGC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 2 cut(s) 251, 331
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 189, 243
BssT1I CCWWGG 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 7, 261
BstDSI CCRYGG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 377
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 141
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 3 cut(s) 11, 460, 505
BstMAI GTCTC 1 cut(s) 190
BstMWI GCNNNNNNNGC 4 cut(s) 406, 500, 511, 520
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 3 cut(s) 390, 400, 605
BstUI CGCG 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 201
BstXI CCANNNNNNTGG 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 386
BtrI CACGTC 1 cut(s) 447
BtsCI GGATG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 7, 261
CfoI GCGC 3 cut(s) 11, 460, 505
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 112, 247
Csp6I GTAC 3 cut(s) 334, 355, 388
CviJI RGCY 6 cut(s) 5, 73, 259, 298, 523, 557
CviKI_1 RGCY 6 cut(s) 5, 73, 259, 298, 523, 557
CviQI GTAC 3 cut(s) 334, 355, 388
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 112, 247
Eco57I CTGAAG 1 cut(s) 192
Eco91I GGTNACC 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaiI YATR 1 cut(s) 566
FaqI GGGAC 1 cut(s) 588
FauI CCCGC 3 cut(s) 60, 241, 443
Fnu4HI GCNGC 4 cut(s) 293, 296, 398, 456
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 4 cut(s) 293, 296, 398, 456
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 3 cut(s) 10, 459, 504
GluI GCNGC 4 cut(s) 293, 296, 398, 456
GsaI CCCAGC 2 cut(s) 498, 527
GsuI CTGGAG 1 cut(s) 320
HapII CCGG 5 cut(s) 260, 392, 401, 425, 606
HhaI GCGC 3 cut(s) 11, 460, 505
Hin6I GCGC 3 cut(s) 9, 458, 503
HinP1I GCGC 3 cut(s) 9, 458, 503
HinfI GANTC 1 cut(s) 576
HpaII CCGG 5 cut(s) 260, 392, 401, 425, 606
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 2 cut(s) 247, 334
Hpy188I TCNGA 2 cut(s) 211, 444
Hpy8I GTNNAC 2 cut(s) 247, 334
Hpy99I CGWCG 3 cut(s) 368, 388, 448
HpyAV CCTTC 1 cut(s) 547
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 3 cut(s) 170, 342, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 406, 500, 511, 520
HpySE526I ACGT 1 cut(s) 446
HspAI GCGC 3 cut(s) 9, 458, 503
KroI GCCGGC 1 cut(s) 259
KroNI GCCGGC 1 cut(s) 261
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 1 cut(s) 377
MboII GAAGA 3 cut(s) 206, 224, 571
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 2 cut(s) 83, 161
MlyI GAGTC 1 cut(s) 570
MmeI TCCRAC 1 cut(s) 467
MroNI GCCGGC 1 cut(s) 259
MslI CAYNNNNRTG 1 cut(s) 329
MspI CCGG 5 cut(s) 260, 392, 401, 425, 606
MspR9I CCNGG 3 cut(s) 392, 402, 607
Mva1269I GAATGC 1 cut(s) 344
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 406, 500, 511, 520
NaeI GCCGGC 1 cut(s) 261
NciI CCSGG 3 cut(s) 392, 402, 607
NgoMIV GCCGGC 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 249, 396
NmuCI GTSAC 1 cut(s) 377
NsbI TGCGCA 1 cut(s) 504
OliI CACNNNNGTG 1 cut(s) 329
PctI GAATGC 1 cut(s) 344
PdiI GCCGGC 1 cut(s) 261
PkrI GCNGC 4 cut(s) 294, 297, 399, 457
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
PspEI GGTNACC 1 cut(s) 377
PspFI CCCAGC 2 cut(s) 494, 523
PspN4I GGNNCC 2 cut(s) 249, 396
PspPI GGNCC 2 cut(s) 112, 247
RsaI GTAC 3 cut(s) 335, 356, 389
RsaNI GTAC 3 cut(s) 334, 355, 388
RseI CAYNNNNRTG 1 cut(s) 329
SatI GCNGC 4 cut(s) 293, 296, 398, 456
Sau96I GGNCC 2 cut(s) 112, 247
SchI GAGTC 1 cut(s) 570
ScrFI CCNGG 3 cut(s) 392, 402, 607
SduI GDGCHC 1 cut(s) 564
SetI ASST 8 cut(s) 26, 39, 102, 114, 224, 347, 440, 449
SinI GGWCC 2 cut(s) 112, 247
SmiMI CAYNNNNRTG 1 cut(s) 329
Sse9I AATT 2 cut(s) 83, 161
SsiI CCGC 8 cut(s) 53, 234, 263, 292, 295, 398, 450, 455
StyD4I CCNGG 3 cut(s) 390, 400, 605
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 449
TaqI TCGA 2 cut(s) 273, 285
TasI AATT 2 cut(s) 83, 161
TauI GCSGC 4 cut(s) 295, 298, 400, 458
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 2 cut(s) 112, 247
XagI CCTNNNNNAGG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.