Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016098

Physical Location & Seq

Genomic Coordinates Forward (+)

20439383 .. 20441159

Gene Structure 1777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGACCCTTCTCTCCCCTCGTGCGCTCTCTCCTCCTCTCAATCCCAAACCTTTGTCCCTTCACCAGACCAAACCCACTTCACATTCATTGTCTCTCTCAAAACCCACCACCTTCTCCGGTCCTAAACACCTCTCCACCCGGTTCACTAAACCGGAATCAAGAAACTGGTTAATAGATGCAAAGCAAGGACTAGCTGCTTTAGCTTTATCTCTAACTCTCACTTTCTCACCTGTTGGCACTGCTTTAGCCTCTGAGTTCAATATCCTCAACGATGGTCCACCTAAAGAAACTTACGTAGTCGATGACGCTGGTGTTCTTAGTCGAGTGACGAAGTCAGATCTTAAGAAGCTTTTGTCTGATCTTGAATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTATCCTTCTATTGAAGAAGGTAACAATAAGGGTATTGTTGTTTTGATAACAAGTCAGAAGGAAGGAGCTATTACTGGTGGTCCTGCTTTTATTGAAGCTGTTGGTGAAAACATTCTTGATGCTACCGTCTCCGAAAATCTTCCCGTACTAGCAACGGACGAAAAATACAACGAGGCGGTATATAGCAGTGCGAAAAGGTTGGTTGCAGCTATAGACGGTCAACCAGATCCCGGGGGTCCAACCGTAAAGGATAGCAAGAGAGAATCAAATTTCAAGACGAAAGAAGAAACCGATGAGAAGCGAGGACAGTTCAGTCTTGTCGTTGGAGGATTACTTGTAATTGCCTTTGTAGTTCCCATGGCACAATACTTTGCTTATGTCTCCAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042578 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

285

Amino Acids

31.14

Weight (kDa)

8.81

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPM_phosphatase	PF04536	100 - 224	5.4e-20	TPM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54780
fragaria_vesca	FvH4_6g05320
malus_domestica	MD04G1209400.v1.1 MD12G1224000.v1.1
prunus_persica	Prupe.6G330400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454061
rosa_laevigata	RLG00000025485
rosa_multiflora	Rmu_sc0040155.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430870
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055600 Rh3BG057000 Rh3CG056300 Rh3DG057600
rosa_wichuraiana	Rw3G004260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	777
AccB7I	CCANNNNNTGG	1 cut(s)	454
AciI	CCGC	1 cut(s)	641
AclWI	GGATC	1 cut(s)	686
AcsI	RAATTY	1 cut(s)	733
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	2 cut(s)	454, 695
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	5 cut(s)	262, 368, 479, 560, 739
AjnI	CCWGG	2 cut(s)	447, 848
AluBI	AGCT	7 cut(s)	197, 206, 352, 412, 533, 563, 674
AluI	AGCT	7 cut(s)	197, 206, 352, 412, 533, 563, 674
Alw26I	GTCTC	4 cut(s)	99, 379, 598, 850
AlwI	GGATC	1 cut(s)	686
Ama87I	CYCGRG	1 cut(s)	695
ApeKI	GCWGC	2 cut(s)	197, 671
ApoI	RAATTY	1 cut(s)	733
Asp700I	GAANNNNTTC	2 cut(s)	576, 603
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	4 cut(s)	122, 278, 545, 701
AsuC2I	CCSGG	3 cut(s)	142, 696, 697
AsuHPI	GGTGA	4 cut(s)	56, 222, 406, 581
AvaI	CYCGRG	1 cut(s)	695
AvaII	GGWCC	4 cut(s)	122, 278, 545, 701
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	184, 683
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	2 cut(s)	449, 850
BciVI	GTATCC	1 cut(s)	477
BcnI	CCSGG	3 cut(s)	142, 696, 697
BcoDI	GTCTC	4 cut(s)	99, 379, 598, 850
BfaI	CTAG	2 cut(s)	194, 614
BfmI	CTRYAG	1 cut(s)	675
BfrI	CTTAAG	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	477
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	2 cut(s)	198, 672
BlsI	GCNGC	2 cut(s)	199, 673
Bme1390I	CCNGG	5 cut(s)	142, 449, 696, 697, 850
Bme18I	GGWCC	4 cut(s)	122, 278, 545, 701
BmeT110I	CYCGRG	1 cut(s)	695
BmgT120I	GGNCC	4 cut(s)	122, 278, 545, 701
BmiI	GGNNCC	1 cut(s)	702
BmrFI	CCNGG	5 cut(s)	142, 449, 696, 697, 850
BmsI	GCATC	3 cut(s)	169, 418, 574
BpmI	CTGGAG	1 cut(s)	832
BpuMI	CCSGG	3 cut(s)	142, 696, 697
BsaAI	YACGTR	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	695, 696, 822
BsaWI	WCCGGW	2 cut(s)	119, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 695
Bse1I	ACTGG	3 cut(s)	173, 417, 544
BseBI	CCWGG	2 cut(s)	449, 850
BseDI	CCNNGG	3 cut(s)	695, 696, 822
BseLI	CCNNNNNNNGG	2 cut(s)	454, 695
BseMII	CTCAG	2 cut(s)	246, 374
BseNI	ACTGG	3 cut(s)	173, 417, 544
BseRI	GAGGAG	2 cut(s)	24, 27
BseXI	GCAGC	2 cut(s)	184, 683
BsiHKCI	CYCGRG	1 cut(s)	695
BsiSI	CCGG	4 cut(s)	120, 142, 155, 696
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	454, 695
BsmAI	GTCTC	4 cut(s)	99, 379, 598, 850
BsmBI	CGTCTC	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	695
Bsp143I	GATC	3 cut(s)	340, 361, 691
Bsp19I	CCATGG	1 cut(s)	822
BspACI	CCGC	1 cut(s)	641
BspCNI	CTCAG	2 cut(s)	247, 375
BspLI	GGNNCC	1 cut(s)	702
BspPI	GGATC	1 cut(s)	686
BspTI	CTTAAG	1 cut(s)	344
BsrI	ACTGG	3 cut(s)	173, 417, 544
BssECI	CCNNGG	3 cut(s)	695, 696, 822
BssMI	GATC	3 cut(s)	340, 361, 691
BssSI	CACGAG	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	822
Bst2BI	CACGAG	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	449, 850
Bst4CI	ACNGT	5 cut(s)	403, 592, 683, 709, 774
BstAFI	CTTAAG	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	255, 320, 383
BstDSI	CCRYGG	1 cut(s)	822
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	3 cut(s)	343, 364, 694
BstMAI	GTCTC	4 cut(s)	99, 379, 598, 850
BstMBI	GATC	3 cut(s)	340, 361, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	2 cut(s)	449, 850
BstSCI	CCNGG	5 cut(s)	140, 447, 694, 695, 848
BstSFI	CTRYAG	1 cut(s)	675
BstSNI	TACGTA	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	184, 683
BstX2I	RGATCY	2 cut(s)	340, 691
BstYI	RGATCY	2 cut(s)	340, 691
BsuI	GTATCC	1 cut(s)	477
BtgI	CCRYGG	1 cut(s)	822
BtsI	GCAGTG	2 cut(s)	240, 658
BtsIMutI	CAGTG	3 cut(s)	240, 399, 658
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	4 cut(s)	122, 278, 545, 701
Cfr9I	CCCGGG	1 cut(s)	695
CseI	GACGC	1 cut(s)	317
CsiI	ACCWGGT	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	1 cut(s)	823
CviJI	RGCY	8 cut(s)	197, 206, 251, 352, 412, 533, 563, 674
CviKI_1	RGCY	8 cut(s)	197, 206, 251, 352, 412, 533, 563, 674
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	3 cut(s)	255, 320, 383
DpnI	GATC	3 cut(s)	342, 363, 693
DpnII	GATC	3 cut(s)	340, 361, 691
DrdI	GACNNNNNNGTC	1 cut(s)	777
DseDI	GACNNNNNNGTC	1 cut(s)	777
Eco105I	TACGTA	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	822
Eco47I	GGWCC	4 cut(s)	122, 278, 545, 701
Eco88I	CYCGRG	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	447, 848
EcoT14I	CCWWGG	1 cut(s)	822
ErhI	CCWWGG	1 cut(s)	822
Esp3I	CGTCTC	1 cut(s)	598
FaeI	CATG	1 cut(s)	826
FaiI	YATR	6 cut(s)	441, 646, 648, 677, 824, 843
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	1 cut(s)	822
Fnu4HI	GCNGC	2 cut(s)	198, 672
Fsp4HI	GCNGC	2 cut(s)	198, 672
FspBI	CTAG	2 cut(s)	194, 614
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	198, 672
GsuI	CTGGAG	1 cut(s)	832
HapII	CCGG	4 cut(s)	120, 142, 155, 696
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	826
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	686
HindII	GTYRAC	1 cut(s)	686
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	3 cut(s)	158, 387, 728
HpaII	CCGG	4 cut(s)	120, 142, 155, 696
HphI	GGTGA	4 cut(s)	56, 222, 406, 581
Hpy166II	GTNNAC	3 cut(s)	147, 281, 686
Hpy188I	TCNGA	6 cut(s)	256, 340, 361, 407, 522, 598
Hpy188III	TCNNGA	4 cut(s)	162, 365, 581, 739
Hpy8I	GTNNAC	3 cut(s)	147, 281, 686
HpyAV	CCTTC	7 cut(s)	20, 71, 124, 476, 480, 517, 521
HpyCH4III	ACNGT	5 cut(s)	403, 592, 683, 709, 774
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	182, 443, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	3 cut(s)	255, 320, 383
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	826
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	3 cut(s)	340, 361, 691
LmnI	GCTCC	1 cut(s)	530
Lsp1109I	GCAGC	2 cut(s)	184, 683
LweI	GCATC	3 cut(s)	169, 418, 574
MabI	ACCWGGT	1 cut(s)	447
MaeI	CTAG	2 cut(s)	194, 614
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	328, 485
MalI	GATC	3 cut(s)	342, 363, 693
MboI	GATC	3 cut(s)	340, 361, 691
MboII	GAAGA	3 cut(s)	491, 596, 761
MflI	RGATCY	2 cut(s)	340, 691
MluCI	AATT	3 cut(s)	391, 733, 804
MlyI	GAGTC	1 cut(s)	381
MmeI	TCCRAC	2 cut(s)	728, 769
MnlI	CCTC	9 cut(s)	30, 45, 48, 143, 262, 278, 631, 761, 785
MroXI	GAANNNNTTC	2 cut(s)	576, 603
MseI	TTAA	2 cut(s)	173, 345
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	4 cut(s)	120, 142, 155, 696
MspR9I	CCNGG	5 cut(s)	142, 449, 696, 697, 850
MvaI	CCWGG	2 cut(s)	449, 850
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	3 cut(s)	142, 696, 697
NcoI	CCATGG	1 cut(s)	822
NdeII	GATC	3 cut(s)	340, 361, 691
NlaIII	CATG	1 cut(s)	826
NlaIV	GGNNCC	1 cut(s)	702
NmuCI	GTSAC	1 cut(s)	328
PdmI	GAANNNNTTC	2 cut(s)	576, 603
PfeI	GAWTC	2 cut(s)	158, 728
PflFI	GACNNNGTC	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	848
PkrI	GCNGC	2 cut(s)	199, 673
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
Ppu21I	YACGTR	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	447, 848
PspGI	CCWGG	2 cut(s)	447, 848
PspN4I	GGNNCC	1 cut(s)	702
PspPI	GGNCC	4 cut(s)	122, 278, 545, 701
PsuI	RGATCY	2 cut(s)	340, 691
PsyI	GACNNNGTC	1 cut(s)	334
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
SaqAI	TTAA	2 cut(s)	173, 345
SatI	GCNGC	2 cut(s)	198, 672
Sau3AI	GATC	3 cut(s)	340, 361, 691
Sau96I	GGNCC	4 cut(s)	122, 278, 545, 701
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	5 cut(s)	142, 449, 696, 697, 850
SexAI	ACCWGGT	1 cut(s)	447
SfaNI	GCATC	3 cut(s)	169, 418, 574
SfcI	CTRYAG	1 cut(s)	675
SinI	GGWCC	4 cut(s)	122, 278, 545, 701
SmaI	CCCGGG	1 cut(s)	697
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SnaBI	TACGTA	1 cut(s)	298
Sse9I	AATT	3 cut(s)	391, 733, 804
SsiI	CCGC	1 cut(s)	641
SspMI	CTAG	2 cut(s)	194, 614
StyD4I	CCNGG	5 cut(s)	140, 447, 694, 695, 848
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	5 cut(s)	403, 592, 683, 709, 774
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	303, 325
TasI	AATT	3 cut(s)	391, 733, 804
TfiI	GAWTC	2 cut(s)	158, 728
Tru1I	TTAA	2 cut(s)	173, 345
Tru9I	TTAA	2 cut(s)	173, 345
TscAI	CASTG	3 cut(s)	247, 406, 658
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	197, 671
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	78, 385
TspGWI	ACGGA	1 cut(s)	635
TspMI	CCCGGG	1 cut(s)	695
TspRI	CASTG	3 cut(s)	247, 406, 658
Tth111I	GACNNNGTC	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	344
VpaK11BI	GGWCC	4 cut(s)	122, 278, 545, 701
XapI	RAATTY	1 cut(s)	733
XmaI	CCCGGG	1 cut(s)	695
XmnI	GAANNNNTTC	2 cut(s)	576, 603
XspI	CTAG	2 cut(s)	194, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.