Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002437

Physical Location & Seq

Genomic Coordinates Forward (+)

76013049 .. 76014859

Gene Structure 1811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0652900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCAGCTAAAGTGTTTTCATGGACTCCATCTCTCAGTCCTTCCAAATTACGCCAAGCTCAGCCGCAGCAGCCATGGCTGAGTCGACGCTCAAGCGCCAAGAAGAGATCTGCACTGGTCGTTCGTGCCTCCCTTCCCGAGTCTCTCATGGCTTCTTCTCCTCCTCCTCTTCTGCTACTGGAACAACTCCATCAGCAGACACCATCAACCTCGCTGTTTCTGCTGGCTGCAGACACCGCCGGTTACTCCTTGGCCAGTTACTACACTTCTTTGGGTCTCTTCGTCATCTCTGTTCCAGGCCTTTGGTCCCTCATCAAACGTTCTGTTAAATCCAAGATTGTGCAGAAGACCTTTATTGGGGAAGAGAAGAAGGCACCAAATCAAGTCGCAGGTGAAATTCTCTCCTTCTTCACTCGCAACAATTTTGTGGTCACTGATAGAGGAGAGACCATCACGTTTGAAGGCATGATGGTTCCAAGTCGAGGCCAAGCAGCATTGCTGACCTTTTGCACCTGCATCAGCCTCGCAAGTGTAGCCCTTGTTCTTACAATAACTGTTCCAGATTTCGGCAACAATTGGTTTTGGATCACCACCTTAAGTCCATTGGCGGGAGCATATTACTGGAAACGAGCCGCAAGAAAGGAGCAGATCAAGGTGAAAATGATAGTCATAGATGACGGTACACAGTCAGAGGTTGTCGTTCAAGGGGATGACCAGCAAGTAGAGCAAATGAGGAAGGAGCTTAAACTGAGTGAGAAAGGAATGGTGTATGTTAAGGGTCTATTCGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042578 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

264

Amino Acids

29.33

Weight (kDa)

9.72

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB1	PF12046	86 - 250	1.5e-56	Cofactor assembly of complex C subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54790 AT1G54790 AT1G54790
fragaria_vesca	FvH4_6g05321 FvH4_6g05321 FvH4_6g05321 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330
malus_domestica	MD04G1209200.v1.1 MD04G1209300.v1.1 MD12G1223900.v1.1
prunus_persica	Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1
pyrus_communis	pycom04g18540 pycom04g18550 pycom12g20930 pycom12g20950
rosa_chinensis	RchiOBHm_Chr3g0454071 RchiOBHm_Chr3g0454091
rosa_laevigata	RLG00000025484
rosa_multiflora	Rmu_sc0020696.1_g000003 Rmu_sc0020696.1_g000004 Rmu_sc0026189.1_g000003 Rmu_sc0026189.1_g000004 Rmu_sc0040155.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430880
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055700 Rh3AG055800 Rh3BG057100 Rh3BG057200 Rh3CG056400 Rh3CG056500 Rh3DG057700 Rh3DG057800
rosa_wichuraiana	Rw3G004270 Rw3G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	380, 521
Acc36I	ACCTGC	2 cut(s)	380, 521
AccB1I	GGYRCC	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	85
AciI	CCGC	4 cut(s)	65, 237, 608, 633
AclI	AACGTT	1 cut(s)	319
AclWI	GGATC	1 cut(s)	593
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	396
AfaI	GTAC	1 cut(s)	682
AfiI	CCNNNNNNNGG	4 cut(s)	357, 482, 566, 608
AflII	CTTAAG	1 cut(s)	595
AgsI	TTSAA	2 cut(s)	461, 704
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	3 cut(s)	8, 59, 742
AluI	AGCT	3 cut(s)	8, 59, 742
Alw26I	GTCTC	3 cut(s)	147, 281, 440
AlwI	GGATC	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	3 cut(s)	252, 298, 484
ApeKI	GCWGC	5 cut(s)	5, 67, 70, 227, 491
ApoI	RAATTY	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	404, 580, 667
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	353
BbvI	GCAGC	5 cut(s)	17, 79, 82, 214, 503
BccI	CCATC	5 cut(s)	37, 198, 211, 458, 463
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	3 cut(s)	147, 281, 440
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	595
BfuAI	ACCTGC	2 cut(s)	380, 521
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	7 cut(s)	6, 65, 68, 71, 228, 492, 633
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	7 cut(s)	7, 66, 69, 72, 229, 493, 634
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	306
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	3 cut(s)	308, 375, 474
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	76
BsaI	GGTCTC	2 cut(s)	281, 440
BsaJI	CCNNGG	2 cut(s)	74, 249
Bsc4I	CCNNNNNNNGG	4 cut(s)	357, 482, 566, 608
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	4 cut(s)	120, 183, 255, 626
Bse3DI	GCAATG	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	74, 249
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	4 cut(s)	357, 482, 566, 608
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	4 cut(s)	49, 71, 74, 740
BseNI	ACTGG	4 cut(s)	120, 183, 255, 626
BseRI	GAGGAG	4 cut(s)	150, 153, 156, 456
BseXI	GCAGC	5 cut(s)	17, 79, 82, 214, 503
BsgI	GTGCAG	2 cut(s)	96, 362
BshFI	GGCC	3 cut(s)	254, 300, 486
BshNI	GGYRCC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	4 cut(s)	357, 482, 566, 608
BsmAI	GTCTC	3 cut(s)	147, 281, 440
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	254, 300, 486
Bso31I	GGTCTC	2 cut(s)	281, 440
BsoBI	CYCGRG	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	107, 585, 648
Bsp1720I	GCTNAGC	1 cut(s)	60
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	4 cut(s)	65, 237, 608, 633
BspANI	GGCC	3 cut(s)	254, 300, 486
BspCNI	CTCAG	4 cut(s)	48, 72, 73, 741
BspLI	GGNNCC	3 cut(s)	308, 375, 474
BspMAI	CTGCAG	1 cut(s)	232
BspMI	ACCTGC	2 cut(s)	380, 521
BspPI	GGATC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	373
BspTI	CTTAAG	1 cut(s)	595
BspTNI	GGTCTC	2 cut(s)	281, 440
BsrDI	GCAATG	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	4 cut(s)	120, 183, 255, 626
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	74, 249
BssMI	GATC	3 cut(s)	107, 585, 648
BssT1I	CCWWGG	2 cut(s)	74, 249
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	3 cut(s)	556, 680, 687
Bst6I	CTCTTC	4 cut(s)	98, 174, 284, 357
BstAFI	CTTAAG	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	4 cut(s)	35, 60, 80, 749
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	715
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	3 cut(s)	110, 588, 651
BstMAI	GTCTC	3 cut(s)	147, 281, 440
BstMBI	GATC	3 cut(s)	107, 585, 648
BstMWI	GCNNNNNNNGC	6 cut(s)	70, 76, 220, 236, 533, 724
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	5 cut(s)	17, 79, 82, 214, 503
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	254, 300, 486
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	715
BtsIMutI	CAGTG	2 cut(s)	113, 432
BveI	ACCTGC	2 cut(s)	380, 521
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	306
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	681
CviAII	CATG	4 cut(s)	21, 75, 148, 466
CviQI	GTAC	1 cut(s)	681
DdeI	CTNAG	4 cut(s)	35, 60, 80, 749
DpnI	GATC	3 cut(s)	109, 587, 650
DpnII	GATC	3 cut(s)	107, 585, 648
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	4 cut(s)	98, 174, 284, 357
EarI	CTCTTC	4 cut(s)	98, 174, 284, 357
Eco130I	CCWWGG	2 cut(s)	74, 249
Eco147I	AGGCCT	1 cut(s)	300
Eco31I	GGTCTC	2 cut(s)	281, 440
Eco47I	GGWCC	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	74, 249
ErhI	CCWWGG	2 cut(s)	74, 249
FaeI	CATG	4 cut(s)	24, 78, 151, 469
FaiI	YATR	7 cut(s)	22, 76, 149, 467, 616, 671, 771
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	20, 74, 147, 465
FauI	CCCGC	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	7 cut(s)	6, 65, 68, 71, 228, 492, 633
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	7 cut(s)	6, 65, 68, 71, 228, 492, 633
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	7 cut(s)	6, 65, 68, 71, 228, 492, 633
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	254, 300, 486
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	4 cut(s)	24, 78, 151, 469
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HinfI	GANTC	3 cut(s)	25, 82, 140
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	3 cut(s)	404, 580, 667
Hpy166II	GTNNAC	2 cut(s)	86, 683
Hpy188I	TCNGA	1 cut(s)	691
Hpy188III	TCNNGA	3 cut(s)	137, 560, 787
Hpy8I	GTNNAC	2 cut(s)	86, 683
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	6 cut(s)	51, 143, 364, 415, 455, 730
HpyCH4III	ACNGT	3 cut(s)	556, 680, 687
HpyCH4IV	ACGT	2 cut(s)	319, 455
HpyCH4V	TGCA	5 cut(s)	113, 230, 343, 510, 516
HpyF10VI	GCNNNNNNNGC	6 cut(s)	70, 76, 220, 236, 533, 724
HpyF3I	CTNAG	4 cut(s)	35, 60, 80, 749
HpySE526I	ACGT	2 cut(s)	319, 455
Hsp92II	CATG	4 cut(s)	24, 78, 151, 469
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	107, 585, 648
LmnI	GCTCC	3 cut(s)	611, 643, 739
Lsp1109I	GCAGC	5 cut(s)	17, 79, 82, 214, 503
LweI	GCATC	1 cut(s)	525
MaeII	ACGT	2 cut(s)	319, 455
MaeIII	GTNAC	3 cut(s)	242, 257, 430
MalI	GATC	3 cut(s)	109, 587, 650
MboI	GATC	3 cut(s)	107, 585, 648
MboII	GAAGA	8 cut(s)	115, 147, 161, 271, 358, 374, 379, 400
MfeI	CAATTG	1 cut(s)	574
MflI	RGATCY	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	4 cut(s)	47, 396, 421, 574
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	3 cut(s)	19, 91, 149
Mox20I	TGGCCA	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	4 cut(s)	327, 596, 744, 774
Msp20I	TGGCCA	1 cut(s)	254
MspCI	CTTAAG	1 cut(s)	595
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	6 cut(s)	70, 76, 220, 236, 533, 724
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	3 cut(s)	107, 585, 648
NlaIII	CATG	4 cut(s)	24, 78, 151, 469
NlaIV	GGNNCC	3 cut(s)	308, 375, 474
NmuCI	GTSAC	1 cut(s)	430
PaqCI	CACCTGC	2 cut(s)	380, 521
PceI	AGGCCT	1 cut(s)	300
PkrI	GCNGC	7 cut(s)	7, 66, 69, 72, 229, 493, 634
PleI	GAGTC	3 cut(s)	19, 90, 148
PpsI	GAGTC	3 cut(s)	19, 90, 148
Psp1406I	AACGTT	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	3 cut(s)	308, 375, 474
PspPI	GGNCC	1 cut(s)	306
PsrI	GAACNNNNNNTAC	2 cut(s)	525, 557
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	1 cut(s)	682
RsaNI	GTAC	1 cut(s)	681
SalI	GTCGAC	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	327, 596, 744, 774
SatI	GCNGC	7 cut(s)	6, 65, 68, 71, 228, 492, 633
Sau3AI	GATC	3 cut(s)	107, 585, 648
Sau96I	GGNCC	1 cut(s)	306
SchI	GAGTC	3 cut(s)	19, 91, 149
ScrFI	CCNGG	1 cut(s)	297
SfaNI	GCATC	1 cut(s)	525
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	91, 595
SmoI	CTYRAG	2 cut(s)	91, 595
Sse9I	AATT	4 cut(s)	47, 396, 421, 574
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	4 cut(s)	65, 237, 608, 633
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	2 cut(s)	74, 249
TaaI	ACNGT	3 cut(s)	556, 680, 687
TaiI	ACGT	2 cut(s)	322, 458
TaqI	TCGA	3 cut(s)	85, 481, 786
TasI	AATT	4 cut(s)	47, 396, 421, 574
TauI	GCSGC	2 cut(s)	67, 635
Tru1I	TTAA	4 cut(s)	327, 596, 744, 774
Tru9I	TTAA	4 cut(s)	327, 596, 744, 774
TscAI	CASTG	2 cut(s)	120, 439
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	5 cut(s)	5, 67, 70, 227, 491
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	120, 439
Vha464I	CTTAAG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.