Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040155.1

Orthogroup ID

OG0002437

Physical Location & Seq

Genomic Coordinates Reverse (-)

1694 .. 2633

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040155.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgcaatattttgaaataactttcccttttgttctaggtaaaaaacttgaaaattatctaccctcggaagattcctttcagaaggggctttacgtgtttgatataggccaaaatgatcttgctggtgcattttattctaaaacactggatcagattcttgcttttattccaacaattttggcacagtttgaatcaggaataaagagtttatatgatcaaggtgctaggaacttttggatacacaacacaggtcctctggggtgcttgactcagaatgtggccacatttggaaccaacccatcaaagcttgatgagcatggatgtgttagcgcacacaaccaagcagctaaaactttcaacctgcagcttcatgatctcagtaaaaagttgcaaggccaatactctgatgcacgtgtctcatatgttgatatcttctctataaaatatgaccttattgcaaattattctcgatacgggtttcagcaacctattatggcttgctgtgggtatggaggtacacctttgaactatgacagtcgggtttcttgtggatcaacaagggtcttgaatggcacgtctgtcacatccaaagggtgtagcaatagtgctgtgtacgttaattgggatggaattcattacacagaagctgcaaatcagtttgtctcatcaaagatactcaccggaaagtattctgatcctcctttgccgaacaacatttctttcctctcaagttttaaaaccccaaggtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Kinesin Lipase_GDSL

Protein Analysis

250

Amino Acids

27.8

Weight (kDa)

7.59

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54790 AT1G54790 AT1G54790
fragaria_vesca	FvH4_6g05321 FvH4_6g05321 FvH4_6g05321 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330
malus_domestica	MD04G1209200.v1.1 MD04G1209300.v1.1 MD12G1223900.v1.1
prunus_persica	Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1
pyrus_communis	pycom04g18540 pycom04g18550 pycom12g20930 pycom12g20950
rosa_chinensis	RchiOBHm_Chr3g0454071 RchiOBHm_Chr3g0454091
rosa_laevigata	RLG00000025484
rosa_multiflora	Rmu_sc0020696.1_g000003 Rmu_sc0020696.1_g000004 Rmu_sc0026189.1_g000003 Rmu_sc0026189.1_g000004 Rmu_sc0040155.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430880
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055700 Rh3AG055800 Rh3BG057100 Rh3BG057200 Rh3CG056400 Rh3CG056500 Rh3DG057700 Rh3DG057800
rosa_wichuraiana	Rw3G004270 Rw3G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	369
AclWI	GGATC	3 cut(s)	156, 559, 689
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	630
AcvI	CACGTG	1 cut(s)	413
AfaI	GTAC	2 cut(s)	517, 614
AfiI	CCNNNNNNNGG	1 cut(s)	747
AflIII	ACRYGT	2 cut(s)	93, 412
AgsI	TTSAA	6 cut(s)	14, 50, 191, 358, 526, 568
AjiI	CACGTC	1 cut(s)	576
AluBI	AGCT	4 cut(s)	307, 347, 367, 647
AluI	AGCT	4 cut(s)	307, 347, 367, 647
Alw26I	GTCTC	2 cut(s)	421, 667
AlwI	GGATC	3 cut(s)	156, 559, 689
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	3 cut(s)	106, 279, 394
ApeKI	GCWGC	3 cut(s)	344, 364, 647
ApoI	RAATTY	1 cut(s)	630
Asp700I	GAANNNNTTC	1 cut(s)	688
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	670
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	281
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
BbrPI	CACGTG	1 cut(s)	413
BbvI	GCAGC	3 cut(s)	356, 376, 634
BccI	CCATC	2 cut(s)	307, 620
BciVI	GTATCC	1 cut(s)	231
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	421, 667
BfaI	CTAG	2 cut(s)	35, 225
BfmI	CTRYAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	231
BisI	GCNGC	3 cut(s)	345, 365, 648
BlsI	GCNGC	3 cut(s)	346, 366, 649
Bme18I	GGWCC	1 cut(s)	251
BmgBI	CACGTC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	292
BmsI	GCATC	1 cut(s)	397
BpuEI	CTTGAG	1 cut(s)	712
BsaAI	YACGTR	2 cut(s)	94, 413
BsaJI	CCNNGG	2 cut(s)	63, 743
BsaWI	WCCGGW	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	1 cut(s)	747
Bse1I	ACTGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	63, 743
BseGI	GGATG	3 cut(s)	326, 584, 631
BseLI	CCNNNNNNNGG	1 cut(s)	747
BseMII	CTCAG	2 cut(s)	284, 391
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	356, 376, 634
BshFI	GGCC	3 cut(s)	108, 281, 396
BsiSI	CCGG	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	747
BsmAI	GTCTC	2 cut(s)	421, 667
BsnI	GGCC	3 cut(s)	108, 281, 396
Bsp143I	GATC	6 cut(s)	115, 148, 214, 373, 551, 694
BspANI	GGCC	3 cut(s)	108, 281, 396
BspCNI	CTCAG	2 cut(s)	283, 390
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	292
BspMAI	CTGCAG	1 cut(s)	366
BspMI	ACCTGC	1 cut(s)	369
BspPI	GGATC	3 cut(s)	156, 559, 689
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	63, 743
BssMI	GATC	6 cut(s)	115, 148, 214, 373, 551, 694
BssT1I	CCWWGG	1 cut(s)	743
Bst4CI	ACNGT	2 cut(s)	186, 536
BstBAI	YACGTR	2 cut(s)	94, 413
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	2 cut(s)	270, 377
BstF5I	GGATG	3 cut(s)	326, 584, 631
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	6 cut(s)	118, 151, 217, 376, 554, 697
BstMAI	GTCTC	2 cut(s)	421, 667
BstMBI	GATC	6 cut(s)	115, 148, 214, 373, 551, 694
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	356, 376, 634
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	108, 281, 396
BtrI	CACGTC	1 cut(s)	576
BtsCI	GGATG	3 cut(s)	326, 584, 631
BtsIMutI	CAGTG	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	499
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	516, 613
CviAII	CATG	2 cut(s)	317, 371
CviJI	RGCY	9 cut(s)	88, 108, 281, 307, 347, 367, 396, 497, 647
CviKI_1	RGCY	9 cut(s)	88, 108, 281, 307, 347, 367, 396, 497, 647
CviQI	GTAC	2 cut(s)	516, 613
DdeI	CTNAG	2 cut(s)	270, 377
DpnI	GATC	6 cut(s)	117, 150, 216, 375, 553, 696
DpnII	GATC	6 cut(s)	115, 148, 214, 373, 551, 694
DraI	TTTAAA	1 cut(s)	736
EaeI	YGGCCR	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	743
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	630
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	743
ErhI	CCWWGG	1 cut(s)	743
FaeI	CATG	2 cut(s)	320, 374
FatI	CATG	2 cut(s)	316, 370
FauNDI	CATATG	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	345, 365, 648
FokI	GGATG	3 cut(s)	333, 571, 638
Fsp4HI	GCNGC	3 cut(s)	345, 365, 648
FspBI	CTAG	2 cut(s)	35, 225
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	3 cut(s)	345, 365, 648
HaeIII	GGCC	3 cut(s)	108, 281, 396
HapII	CCGG	1 cut(s)	681
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	320, 374
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	4 cut(s)	71, 154, 191, 268
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	2 cut(s)	518, 613
Hpy188I	TCNGA	6 cut(s)	67, 81, 153, 273, 406, 694
Hpy188III	TCNNGA	4 cut(s)	195, 371, 468, 565
Hpy8I	GTNNAC	2 cut(s)	518, 613
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	186, 536
HpyCH4IV	ACGT	4 cut(s)	93, 412, 575, 615
HpyCH4V	TGCA	7 cut(s)	4, 128, 364, 391, 410, 458, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	2 cut(s)	270, 377
HpySE526I	ACGT	4 cut(s)	93, 412, 575, 615
Hsp92II	CATG	2 cut(s)	320, 374
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	6 cut(s)	115, 148, 214, 373, 551, 694
LpnPI	CCDG	7 cut(s)	108, 131, 180, 234, 242, 374, 694
Lsp1109I	GCAGC	3 cut(s)	356, 376, 634
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	35, 225
MaeII	ACGT	4 cut(s)	93, 412, 575, 615
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	6 cut(s)	117, 150, 216, 375, 553, 696
MboI	GATC	6 cut(s)	115, 148, 214, 373, 551, 694
MboII	GAAGA	2 cut(s)	80, 424
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	5 cut(s)	52, 174, 460, 619, 630
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	5 cut(s)	73, 264, 506, 708, 734
Mox20I	TGGCCA	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	688
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	2 cut(s)	618, 735
MslI	CAYNNNNRTG	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	6 cut(s)	115, 148, 214, 373, 551, 694
NlaIII	CATG	2 cut(s)	320, 374
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	580
PagI	TCATGA	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	688
PfeI	GAWTC	3 cut(s)	71, 154, 191
PkrI	GCNGC	3 cut(s)	346, 366, 649
PleI	GAGTC	1 cut(s)	262
PmaCI	CACGTG	1 cut(s)	413
PmlI	CACGTG	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	262
Ppu21I	YACGTR	2 cut(s)	94, 413
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	251
PspPPI	RGGWCCY	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	517, 614
RsaNI	GTAC	2 cut(s)	516, 613
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	618, 735
SatI	GCNGC	3 cut(s)	345, 365, 648
Sau3AI	GATC	6 cut(s)	115, 148, 214, 373, 551, 694
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	727
SmoI	CTYRAG	1 cut(s)	727
Sse9I	AATT	5 cut(s)	52, 174, 460, 619, 630
SspI	AATATT	1 cut(s)	8
SspMI	CTAG	2 cut(s)	35, 225
StyI	CCWWGG	1 cut(s)	743
TaaI	ACNGT	2 cut(s)	186, 536
TaiI	ACGT	4 cut(s)	96, 415, 578, 618
TaqI	TCGA	1 cut(s)	469
TasI	AATT	5 cut(s)	52, 174, 460, 619, 630
TfiI	GAWTC	3 cut(s)	71, 154, 191
Tru1I	TTAA	2 cut(s)	618, 735
Tru9I	TTAA	2 cut(s)	618, 735
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	3 cut(s)	344, 364, 647
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	2 cut(s)	359, 623
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	688
XspI	CTAG	2 cut(s)	35, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.