Rh3AG055700

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002437
Physical Location & Seq
Reverse (-)
3909082 .. 3910364
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG055700.1

Sequence Viewer

Length: 957 bp
ATGTACTTATTTGTTCAGAGAATGTTGTTGCTTGCAGTGGGTGCAATGAACCTTCCATTTCTAAATCCCTATTTGGATTCAGTTGGCATGCCAAGTTTCCGAAATGGGTGCAATTTTGCTGCTGGAGGGGCTACTACACATCCAGCAACTGCATCATCTGTCTGCCCTTTTTCATTTGGGGTTCAGGTCTCTCAGTTTTCGCGATTCAAATCCAGGGCTCTTCAATTGCTAGCTGCTAAAGGTAAAAAACTTGAAAATTATCTACCCTCGGAAGATTCCTTTCAGAAGGGGCTTTACGTGTTTGATATCGGCCAAAATGATCTTGCTGGTGCATTTTATTCTAAAACACTGGATCAGATTCTTGCTTTTATTCCAACAATTTTGGCACAGTTTGAATCAGGAATAAAGAGATTATATGATCAAGGTGCTAGGAACTTTTGGATACACAACACAGGTCCTCTGGGGTGCTTGACTCAGAATGTGGCCACATTTGGAACCAACCCATCAAAACTTGATGAGCATGGATGTGTTAGCGCACACAACCAAGCAGCTAAAATCTTCAACCTGCAGCTTCATGATCTCAGTAAAAAGTTGCAAGGCCAATACTCTGATGCACATATCTCATATGTTGATATCTTCTCTATAAAATATGACCTTATTGCAAATTATTCTCGATACGGGTTTCAGCAACCTATTATGGCTTGCTGTGGGTATGGAGGTCCACCTTTGAACTATAACAGTCGGGTTTCTTGTGGATCAACAAGGGTCTTGAATGGCACGTCTGTCACAGCCAAAGGGCGTAGCAATAGTGCTGTGTACGTTAATTGGGATGGAATTCATTACACAGAAGCTGCAAATCAGTTTGTCTCATCAAAGATACTCACCGGAAAGTATTCTGATCCTCCTTTATCGAACAACATTTCTTTCCTCTCAAGTTTTAAAACCCCAAGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04728 map04144 map04728
Pfam Domains
Protein Families
Kinesin Lipase_GDSL

Protein Analysis

318

Amino Acids

34.98

Weight (kDa)

9.14

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 26 - 292 1e-36 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 573
AccII CGCG 1 cut(s) 202
AclWI GGATC 3 cut(s) 360, 763, 893
AcoI YGGCCR 2 cut(s) 310, 483
AcsI RAATTY 1 cut(s) 834
AfaI GTAC 2 cut(s) 5, 818
AfiI CCNNNNNNNGG 1 cut(s) 951
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 7 cut(s) 208, 224, 254, 395, 562, 730, 772
AjiI CACGTC 1 cut(s) 780
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 4 cut(s) 233, 551, 571, 851
AluI AGCT 4 cut(s) 233, 551, 571, 851
Alw26I GTCTC 2 cut(s) 193, 871
AlwI GGATC 3 cut(s) 360, 763, 893
AlwNI CAGNNNCTG 2 cut(s) 149, 851
AoxI GGCC 3 cut(s) 310, 483, 598
ApeKI GCWGC 5 cut(s) 119, 233, 548, 568, 851
ApoI RAATTY 1 cut(s) 834
Asp700I GAANNNNTTC 1 cut(s) 892
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 455, 719
AsuHPI GGTGA 1 cut(s) 874
AsuNHI GCTAGC 1 cut(s) 229
AvaII GGWCC 2 cut(s) 455, 719
BalI TGGCCA 1 cut(s) 485
BanII GRGCYC 1 cut(s) 220
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BbvI GCAGC 5 cut(s) 106, 220, 560, 580, 838
BccI CCATC 2 cut(s) 511, 824
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciT130I CCWGG 1 cut(s) 214
BciVI GTATCC 1 cut(s) 435
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 193, 871
BfaI CTAG 2 cut(s) 230, 429
BfmI CTRYAG 1 cut(s) 566
BfuAI ACCTGC 1 cut(s) 573
BfuI GTATCC 1 cut(s) 435
BisI GCNGC 5 cut(s) 120, 234, 549, 569, 852
BlsI GCNGC 5 cut(s) 121, 235, 550, 570, 853
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 2 cut(s) 455, 719
BmgBI CACGTC 1 cut(s) 780
BmgT120I GGNCC 2 cut(s) 455, 719
BmiI GGNNCC 1 cut(s) 496
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 161, 601
BmtI GCTAGC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 916
BsaAI YACGTR 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 3 cut(s) 213, 267, 947
BsaWI WCCGGW 1 cut(s) 884
Bsc4I CCNNNNNNNGG 1 cut(s) 951
Bse1I ACTGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 51
Bse8I GATNNNNATC 1 cut(s) 208
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 3 cut(s) 213, 267, 947
BseGI GGATG 3 cut(s) 139, 530, 835
BseJI GATNNNNATC 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 951
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 3 cut(s) 206, 488, 595
BseNI ACTGG 1 cut(s) 354
BseXI GCAGC 5 cut(s) 106, 220, 560, 580, 838
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 3 cut(s) 312, 485, 600
BsiSI CCGG 1 cut(s) 885
BslI CCNNNNNNNGG 1 cut(s) 951
BsmAI GTCTC 2 cut(s) 193, 871
BsnI GGCC 3 cut(s) 312, 485, 600
Bso31I GGTCTC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 6 cut(s) 319, 352, 418, 577, 755, 898
Bsp68I TCGCGA 1 cut(s) 202
BspANI GGCC 3 cut(s) 312, 485, 600
BspCNI CTCAG 3 cut(s) 205, 487, 594
BspFNI CGCG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 496
BspMAI CTGCAG 1 cut(s) 570
BspMI ACCTGC 1 cut(s) 573
BspOI GCTAGC 1 cut(s) 233
BspPI GGATC 3 cut(s) 360, 763, 893
BspQI GCTCTTC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 3 cut(s) 213, 267, 947
BssMI GATC 6 cut(s) 319, 352, 418, 577, 755, 898
BssT1I CCWWGG 1 cut(s) 947
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 390, 740
Bst6I CTCTTC 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 4 cut(s) 33, 89, 231, 703
BstDEI CTNAG 3 cut(s) 192, 474, 581
BstF5I GGATG 3 cut(s) 139, 530, 835
BstFNI CGCG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 6 cut(s) 322, 355, 421, 580, 758, 901
BstMAI GTCTC 2 cut(s) 193, 871
BstMBI GATC 6 cut(s) 319, 352, 418, 577, 755, 898
BstMWI GCNNNNNNNGC 2 cut(s) 41, 128
BstNI CCWGG 1 cut(s) 214
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 566
BstUI CGCG 1 cut(s) 202
BstV1I GCAGC 5 cut(s) 106, 220, 560, 580, 838
BsuI GTATCC 1 cut(s) 435
BsuRI GGCC 3 cut(s) 312, 485, 600
BtrI CACGTC 1 cut(s) 780
BtsCI GGATG 3 cut(s) 139, 530, 835
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 347
BtuMI TCGCGA 1 cut(s) 202
BveI ACCTGC 1 cut(s) 573
Cac8I GCNNGC 4 cut(s) 33, 89, 231, 703
CaiI CAGNNNCTG 2 cut(s) 149, 851
CciI TCATGA 1 cut(s) 574
CfoI GCGC 1 cut(s) 536
Cfr13I GGNCC 2 cut(s) 455, 719
Csp6I GTAC 2 cut(s) 4, 817
CviAII CATG 3 cut(s) 88, 521, 575
CviQI GTAC 2 cut(s) 4, 817
DdeI CTNAG 3 cut(s) 192, 474, 581
DpnI GATC 6 cut(s) 321, 354, 420, 579, 757, 900
DpnII GATC 6 cut(s) 319, 352, 418, 577, 755, 898
DraI TTTAAA 1 cut(s) 940
EaeI YGGCCR 2 cut(s) 310, 483
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 947
Eco24I GRGCYC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 193
Eco32I GATATC 2 cut(s) 307, 634
Eco47I GGWCC 2 cut(s) 455, 719
EcoO109I RGGNCCY 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 834
EcoRII CCWGG 1 cut(s) 212
EcoRV GATATC 2 cut(s) 307, 634
EcoT14I CCWWGG 1 cut(s) 947
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 947
FaeI CATG 3 cut(s) 91, 524, 578
FatI CATG 3 cut(s) 87, 520, 574
FauNDI CATATG 1 cut(s) 625
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 5 cut(s) 120, 234, 549, 569, 852
FokI GGATG 3 cut(s) 126, 537, 842
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 5 cut(s) 120, 234, 549, 569, 852
FspBI CTAG 2 cut(s) 230, 429
GlaI GCGC 1 cut(s) 535
GluI GCNGC 5 cut(s) 120, 234, 549, 569, 852
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 3 cut(s) 312, 485, 600
HapII CCGG 1 cut(s) 885
HhaI GCGC 1 cut(s) 536
Hin1II CATG 3 cut(s) 91, 524, 578
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HinfI GANTC 6 cut(s) 77, 204, 275, 358, 395, 472
HpaII CCGG 1 cut(s) 885
HphI GGTGA 1 cut(s) 874
Hpy166II GTNNAC 2 cut(s) 722, 817
Hpy188I TCNGA 8 cut(s) 18, 101, 271, 285, 357, 477, 610, 898
Hpy188III TCNNGA 5 cut(s) 201, 399, 575, 672, 769
Hpy8I GTNNAC 2 cut(s) 722, 817
HpyAV CCTTC 2 cut(s) 62, 280
HpyCH4III ACNGT 2 cut(s) 390, 740
HpyCH4IV ACGT 3 cut(s) 297, 779, 819
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 128
HpyF3I CTNAG 3 cut(s) 192, 474, 581
HpySE526I ACGT 3 cut(s) 297, 779, 819
Hsp92II CATG 3 cut(s) 91, 524, 578
HspAI GCGC 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 6 cut(s) 319, 352, 418, 577, 755, 898
LguI GCTCTTC 1 cut(s) 225
Lsp1109I GCAGC 5 cut(s) 106, 220, 560, 580, 838
LweI GCATC 2 cut(s) 161, 601
MaeI CTAG 2 cut(s) 230, 429
MaeII ACGT 3 cut(s) 297, 779, 819
MaeIII GTNAC 1 cut(s) 784
MalI GATC 6 cut(s) 321, 354, 420, 579, 757, 900
MboI GATC 6 cut(s) 319, 352, 418, 577, 755, 898
MboII GAAGA 4 cut(s) 212, 284, 550, 628
MfeI CAATTG 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 7 cut(s) 112, 224, 256, 378, 664, 823, 834
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 1 cut(s) 466
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 6 cut(s) 119, 277, 468, 710, 912, 938
Mox20I TGGCCA 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 892
MscI TGGCCA 1 cut(s) 485
MseI TTAA 2 cut(s) 822, 939
MslI CAYNNNNRTG 1 cut(s) 525
Msp20I TGGCCA 1 cut(s) 485
MspI CCGG 1 cut(s) 885
MspR9I CCNGG 1 cut(s) 214
MunI CAATTG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 41, 128
NdeI CATATG 1 cut(s) 625
NdeII GATC 6 cut(s) 319, 352, 418, 577, 755, 898
NheI GCTAGC 1 cut(s) 229
NlaIII CATG 3 cut(s) 91, 524, 578
NlaIV GGNNCC 1 cut(s) 496
NmuCI GTSAC 1 cut(s) 784
NruI TCGCGA 1 cut(s) 202
NspI RCATGY 1 cut(s) 91
PaeI GCATGC 1 cut(s) 91
PagI TCATGA 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 892
PfeI GAWTC 5 cut(s) 77, 204, 275, 358, 395
PkrI GCNGC 5 cut(s) 121, 235, 550, 570, 853
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 496
PspPI GGNCC 2 cut(s) 455, 719
PspPPI RGGWCCY 1 cut(s) 455
PstI CTGCAG 1 cut(s) 570
PstNI CAGNNNCTG 2 cut(s) 149, 851
RruI TCGCGA 1 cut(s) 202
RsaI GTAC 2 cut(s) 5, 818
RsaNI GTAC 2 cut(s) 4, 817
RseI CAYNNNNRTG 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 822, 939
SatI GCNGC 5 cut(s) 120, 234, 549, 569, 852
Sau3AI GATC 6 cut(s) 319, 352, 418, 577, 755, 898
Sau96I GGNCC 2 cut(s) 455, 719
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 2 cut(s) 161, 601
SfcI CTRYAG 1 cut(s) 566
SinI GGWCC 2 cut(s) 455, 719
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 931
SmoI CTYRAG 1 cut(s) 931
SphI GCATGC 1 cut(s) 91
Sse9I AATT 7 cut(s) 112, 224, 256, 378, 664, 823, 834
SspMI CTAG 2 cut(s) 230, 429
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 1 cut(s) 947
TaaI ACNGT 2 cut(s) 390, 740
TaiI ACGT 3 cut(s) 300, 782, 822
TaqI TCGA 2 cut(s) 673, 911
TasI AATT 7 cut(s) 112, 224, 256, 378, 664, 823, 834
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 5 cut(s) 77, 204, 275, 358, 395
Tru1I TTAA 2 cut(s) 822, 939
Tru9I TTAA 2 cut(s) 822, 939
TscAI CASTG 2 cut(s) 42, 354
TseFI GTSAC 1 cut(s) 784
TseI GCWGC 5 cut(s) 119, 233, 548, 568, 851
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 4 cut(s) 62, 162, 563, 827
TspRI CASTG 2 cut(s) 42, 354
VpaK11BI GGWCC 2 cut(s) 455, 719
XapI RAATTY 1 cut(s) 834
XceI RCATGY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 892
XspI CTAG 2 cut(s) 230, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.