Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020696.1

Orthogroup ID

OG0002437

Physical Location & Seq

Genomic Coordinates Forward (+)

10762 .. 11771

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020696.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgggtgccaagaatctcaatgcttttcgtattctcaccttactctgcttcgttcttttacgttttgcaaactcactgaactatcccgccgttttcaactttggtgattcgaactccgacaccggcgagctgaccgccggcgtaggtttccggcttcctcatccttatggaaagctttacttcaatgcttcgttgtcatcgggtgggaggttttccgatggccgtctcatcatagattttctcatgggtgcaatgaaccgtccatttctaaatccctatttggattcagttggaatgccaagtttccgaaatggttgcaattttgctgctggaggggctactacacatccagcaactgcatcatctgtctgccctttttcatttggggttcaggtctctcagttttcgcgattcaaatccaggactcttcaattgctagctgctaaaggtatatatagtcatgaactttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

157

Amino Acids

17.0

Weight (kDa)

9.6

Isoelectric Point (pI)

25.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54790 AT1G54790 AT1G54790
fragaria_vesca	FvH4_6g05321 FvH4_6g05321 FvH4_6g05321 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330
malus_domestica	MD04G1209200.v1.1 MD04G1209300.v1.1 MD12G1223900.v1.1
prunus_persica	Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1
pyrus_communis	pycom04g18540 pycom04g18550 pycom12g20930 pycom12g20950
rosa_chinensis	RchiOBHm_Chr3g0454071 RchiOBHm_Chr3g0454091
rosa_laevigata	RLG00000025484
rosa_multiflora	Rmu_sc0020696.1_g000003 Rmu_sc0020696.1_g000004 Rmu_sc0026189.1_g000003 Rmu_sc0026189.1_g000004 Rmu_sc0040155.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430880
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055700 Rh3AG055800 Rh3BG057100 Rh3BG057200 Rh3CG056400 Rh3CG056500 Rh3DG057700 Rh3DG057800
rosa_wichuraiana	Rw3G004270 Rw3G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	409
AciI	CCGC	2 cut(s)	87, 135
AcoI	YGGCCR	1 cut(s)	220
AgsI	TTSAA	4 cut(s)	97, 184, 415, 431
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	3 cut(s)	130, 175, 440
AluI	AGCT	3 cut(s)	130, 175, 440
Alw26I	GTCTC	2 cut(s)	230, 400
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	326, 440
AsuHPI	GGTGA	2 cut(s)	28, 116
AsuII	TTCGAA	1 cut(s)	110
AsuNHI	GCTAGC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	313, 427
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	2 cut(s)	74, 207
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	230, 400
BfaI	CTAG	1 cut(s)	437
BisI	GCNGC	2 cut(s)	327, 441
BlsI	GCNGC	2 cut(s)	328, 442
Bme1390I	CCNGG	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	368
BmtI	GCTAGC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	400
Bse118I	RCCGGY	2 cut(s)	122, 137
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	421
BseGI	GGATG	2 cut(s)	160, 346
BseJI	GATNNNNATC	1 cut(s)	415
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	313, 427
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	123, 138, 151
BsmAI	GTCTC	2 cut(s)	230, 400
BsmBI	CGTCTC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	400
Bsp119I	TTCGAA	1 cut(s)	110
Bsp68I	TCGCGA	1 cut(s)	409
BspACI	CCGC	2 cut(s)	87, 135
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	409
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	7
BspOI	GCTAGC	1 cut(s)	440
BspT104I	TTCGAA	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	258
BsrFI	RCCGGY	2 cut(s)	122, 137
BssAI	RCCGGY	2 cut(s)	122, 137
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	128, 139, 438
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	160, 346
BstFNI	CGCG	1 cut(s)	409
BstMAI	GTCTC	2 cut(s)	230, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	419
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	313, 427
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	160, 346
BtsIMutI	CAGTG	1 cut(s)	74
BtuMI	TCGCGA	1 cut(s)	409
Cac8I	GCNNGC	3 cut(s)	128, 139, 438
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	460
Cfr10I	RCCGGY	2 cut(s)	122, 137
CviAII	CATG	2 cut(s)	244, 461
CviJI	RGCY	6 cut(s)	130, 154, 175, 222, 338, 440
CviKI_1	RGCY	6 cut(s)	130, 154, 175, 222, 338, 440
DdeI	CTNAG	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	419
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	247, 464
FaiI	YATR	7 cut(s)	168, 233, 245, 452, 454, 456, 462
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	2 cut(s)	243, 460
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	327, 441
FokI	GGATG	2 cut(s)	147, 333
Fsp4HI	GCNGC	2 cut(s)	327, 441
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	2 cut(s)	327, 441
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	3 cut(s)	123, 138, 151
Hin1II	CATG	2 cut(s)	247, 464
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	5 cut(s)	13, 107, 284, 411, 424
HpaII	CCGG	3 cut(s)	123, 138, 151
HphI	GGTGA	2 cut(s)	28, 116
Hpy188I	TCNGA	3 cut(s)	118, 217, 308
Hpy188III	TCNNGA	3 cut(s)	408, 461, 471
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	4 cut(s)	68, 251, 318, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	247, 464
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
LpnPI	CCDG	8 cut(s)	136, 151, 164, 315, 363, 377, 406, 433
Lsp1109I	GCAGC	2 cut(s)	313, 427
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	61
MboII	GAAGA	1 cut(s)	419
MfeI	CAATTG	1 cut(s)	431
MluCI	AATT	2 cut(s)	319, 431
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	2 cut(s)	141, 271
MnlI	CCTC	3 cut(s)	168, 201, 326
MreI	CGCCGGCG	1 cut(s)	137
MroNI	GCCGGC	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	3 cut(s)	123, 138, 151
MspR9I	CCNGG	1 cut(s)	421
MunI	CAATTG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	421
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	335
NaeI	GCCGGC	1 cut(s)	139
NgoMIV	GCCGGC	1 cut(s)	137
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	2 cut(s)	247, 464
NlaIV	GGNNCC	1 cut(s)	7
NruI	TCGCGA	1 cut(s)	409
NspV	TTCGAA	1 cut(s)	110
PagI	TCATGA	1 cut(s)	460
PctI	GAATGC	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	4 cut(s)	13, 107, 284, 411
PfoI	TCCNGGA	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	328, 442
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	356
RruI	TCGCGA	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	165
SatI	GCNGC	2 cut(s)	327, 441
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	421
SetI	ASST	9 cut(s)	41, 64, 132, 148, 177, 212, 396, 442, 451
SfaNI	GCATC	1 cut(s)	368
SfuI	TTCGAA	1 cut(s)	110
SgrAI	CRCCGGYG	2 cut(s)	122, 137
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	319, 431
SsiI	CCGC	2 cut(s)	87, 135
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	319, 431
TfiI	GAWTC	4 cut(s)	13, 107, 284, 411
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	2 cut(s)	326, 440
TspDTI	ATGAA	2 cut(s)	269, 369
TspRI	CASTG	1 cut(s)	81
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.